PDK_20s1363982g001 (Phoenix dactylifera)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 PDK_20s1363982g001 T231005_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
GRMZM2G038252
M02137_2.00
Zea mays
HTRATTGV

BCAATYAD
PBM
Weirauch et al.(2014)
pTH6141
0.625 0.561
WOX13
M02049_2.00
Arabidopsis thaliana
YTGATTGA

TCAATCAR
PBM
Weirauch et al.(2014)
pTH6461
0.625 0.544
WOX13
M00866_2.00
Arabidopsis thaliana
NNTGATTGAN

NTCAATCANN
PBM
Franco-Zorrilla et al.(2014)
WOX13
0.625 0.544
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PDK_20s1363982g001 Homeodomain 111 172

Links

Other Homeodomain family TFs
Other Phoenix dactylifera TFs

130 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
WOX13 Arabidopsis thaliana AT4G35550 D 0.625
GRMZM2G038252 Zea mays GRMZM2G038252 D 0.625
Traes_3DS_97BBFFA03 Triticum aestivum Traes_3DS_97BBFFA03 I 0.621
fgenesh1_pg.scaffold_217000007 Physcomitrella patens fgenesh1_pg.scaffold_217000007 I 0.626
gw1.224.39.1 Physcomitrella patens gw1.224.39.1 I 0.621
gw1.29.10.1 Physcomitrella patens gw1.29.10.1 I 0.621
mgf006573m Mimulus guttatus mgf006573m I 0.625
Aquca_007_00901 Aquilegia coerulea Aquca_007_00901 I 0.625
Bostr.3717s0001 Boechera stricta Bostr.3717s0001 I 0.610
Bostr.7128s0661 Boechera stricta Bostr.7128s0661 I 0.610
Bostr.7867s1413 Boechera stricta Bostr.7867s1413 I 0.625
Cagra.2350s0096 Capsella grandiflora Cagra.2350s0096 I 0.625
Cagra.6160s0025 Capsella grandiflora Cagra.6160s0025 I 0.610
Cagra.6160s0026 Capsella grandiflora Cagra.6160s0026 I 0.610
Carubv10005217m.g Capsella rubella Carubv10005217m.g I 0.625
Carubv10010349m.g Capsella rubella Carubv10010349m.g I 0.610
Cucsa.323040 Cucumis sativus Cucsa.323040 I 0.625
Cucsa.272210 Cucumis sativus Cucsa.272210 I 0.613
TRIUR3_23636 Triticum urartu TRIUR3_23636 I 0.621
VIT_04s0044g00150 Vitis vinifera VIT_04s0044g00150 I 0.613
VIT_18s0122g01140 Vitis vinifera VIT_18s0122g01140 I 0.625
Ca_04823 Cicer arietinum Ca_04823 I 0.623
Ca_18623 Cicer arietinum Ca_18623 I 0.623
Ca_19383 Cicer arietinum Ca_19383 I 0.613
Ca_19386 Cicer arietinum Ca_19386 I 0.613
Cla009089 Citrullus lanatus Cla009089 I 0.625
Cla023819 Citrullus lanatus Cla023819 I 0.613
Pm022951 Prunus mume Pm022951 I 0.625
Pm026793 Prunus mume Pm026793 I 0.625
29830.m001452 Ricinus communis 29830.m001452 I 0.625
cassava23423.valid.m1 Manihot esculenta cassava23423.valid.m1 I 0.625
cassava39214.m1 Manihot esculenta cassava39214.m1 I 0.603
Carubv10012447m.g Capsella rubella Carubv10012447m.g I 0.610
Ciclev10002354m.g Citrus clementina Ciclev10002354m.g I 0.628
Ciclev10026199m.g Citrus clementina Ciclev10026199m.g I 0.625
orange1.1g022516m.g Citrus sinensis orange1.1g022516m.g I 0.625
orange1.1g026809m.g Citrus sinensis orange1.1g026809m.g I 0.628
Pavir.Ea03245 Panicum virgatum Pavir.Ea03245 I 0.625
Pavir.Eb03552 Panicum virgatum Pavir.Eb03552 I 0.625
SapurV1A.0016s0590 Salix purpurea SapurV1A.0016s0590 I 0.615
SapurV1A.0266s0300 Salix purpurea SapurV1A.0266s0300 I 0.615
SapurV1A.1240s0080 Salix purpurea SapurV1A.1240s0080 I 0.625
Thhalv10009917m.g Eutrema salsugineum Thhalv10009917m.g I 0.610
Thhalv10025989m.g Eutrema salsugineum Thhalv10025989m.g I 0.625
PK07880.1 Cannabis sativa PK07880.1 I 0.613
PK14252.1 Cannabis sativa PK14252.1 I 0.638
chr1.CM0113.620.nc Lotus japonicus chr1.CM0113.620.nc I 0.623
LjT41B11.90.nd Lotus japonicus LjT41B11.90.nd I 0.609
MDP0000851699 Malus domestica MDP0000851699 I 0.620
MDP0000316517 Malus domestica MDP0000316517 I 0.625
MDP0000304650 Malus domestica MDP0000304650 I 0.621
Eucgr.I02222 Eucalyptus grandis Eucgr.I02222 I 0.625
evm.TU.supercontig_26.173 Carica papaya evm.TU.supercontig_26.173 I 0.617
evm.TU.supercontig_6.368 Carica papaya evm.TU.supercontig_6.368 I 0.625
gene13035-v1.0-hybrid Fragaria vesca gene13035-v1.0-hybrid I 0.625
gene20491-v1.0-hybrid Fragaria vesca gene20491-v1.0-hybrid I 0.601
Gorai.001G199200 Gossypium raimondii Gorai.001G199200 I 0.625
Gorai.003G002200 Gossypium raimondii Gorai.003G002200 I 0.621
Gorai.004G038300 Gossypium raimondii Gorai.004G038300 I 0.627
Gorai.007G372000 Gossypium raimondii Gorai.007G372000 I 0.631
Lus10016026.g Linum usitatissimum Lus10016026.g I 0.601
Lus10023561.g Linum usitatissimum Lus10023561.g I 0.613
Lus10040447.g Linum usitatissimum Lus10040447.g I 0.625
MDP0000224466 Malus domestica MDP0000224466 I 0.620
PDK_20s1408301g001 Phoenix dactylifera PDK_20s1408301g001 I 0.620
Traes_3DL_6B1815F7D Triticum aestivum Traes_3DL_6B1815F7D I 0.621
AMTR_s00044p00155390 Amborella trichopoda AMTR_s00044p00155390 I 0.621
GLYMA18G52491 Glycine max GLYMA18G52491 I 0.621
GLYMA20G23220 Glycine max GLYMA20G23220 I 0.625
GRMZM2G069274 Zea mays GRMZM2G069274 I 0.625
GRMZM5G805026 Zea mays GRMZM5G805026 I 0.625
GSMUA_Achr10G07260_001 Musa acuminata GSMUA_Achr10G07260_001 I 0.621
GSMUA_Achr1G17980_001 Musa acuminata GSMUA_Achr1G17980_001 I 0.621
GSMUA_Achr4G25530_001 Musa acuminata GSMUA_Achr4G25530_001 I 0.625
GSMUA_Achr4G29470_001 Musa acuminata GSMUA_Achr4G29470_001 I 0.633
GSMUA_Achr5G11080_001 Musa acuminata GSMUA_Achr5G11080_001 I 0.619
GSMUA_Achr7G04050_001 Musa acuminata GSMUA_Achr7G04050_001 I 0.599
GSMUA_AchrUn_randomG18610_001 Musa acuminata GSMUA_AchrUn_randomG18610_001 I 0.621
LPERR01G30370 Leersia perrieri LPERR01G30370 I 0.625
MLOC_56124 Hordeum vulgare MLOC_56124 I 0.621
MTR_1g115315 Medicago truncatula MTR_1g115315 I 0.623
GLYMA10G43580 Glycine max GLYMA10G43580 I 0.625
GLYMA06G01940 Glycine max GLYMA06G01940 I 0.625
WOX14 Arabidopsis thaliana AT1G20700 I 0.610
BGIOSGA004695 Oryza indica BGIOSGA004695 I 0.625
Bo1g006370 Brassica oleracea Bo1g006370 I 0.625
Bo5g030590 Brassica oleracea Bo5g030590 I 0.610
Bo7g117480 Brassica oleracea Bo7g117480 I 0.625
Bra011623 Brassica rapa Bra011623 I 0.625
Bra017720 Brassica rapa Bra017720 I 0.625
Bra025839 Brassica rapa Bra025839 I 0.610
BRADI2G53390 Brachypodium distachyon BRADI2G53390 I 0.621
F775_11596 Aegilops tauschii F775_11596 I 0.621
WOX14 Arabidopsis lyrata fgenesh1_pg.C_scaffold_1001881 I 0.610
WOX10 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1001761 I 0.613
GLYMA02G10410 Glycine max GLYMA02G10410 I 0.621
GLYMA04G01830 Glycine max GLYMA04G01830 I 0.625
MTR_3g115620 Medicago truncatula MTR_3g115620 I 0.625
OB01G44030 Oryza brachyantha OB01G44030 I 0.625
Sb03g038080 Sorghum bicolor Sb03g038080 I 0.625
HB-4 Arabidopsis lyrata scaffold_700564.1 I 0.627
SELMODRAFT_404178 Selaginella moellendorffii SELMODRAFT_404178 I 0.611
SELMODRAFT_407157 Selaginella moellendorffii SELMODRAFT_407157 I 0.611
SELMODRAFT_438787 Selaginella moellendorffii SELMODRAFT_438787 I 0.601
SELMODRAFT_451355 Selaginella moellendorffii SELMODRAFT_451355 I 0.601
Si002508m.g Setaria italica Si002508m.g I 0.625
Solyc02g082670.2 Solanum lycopersicum Solyc02g082670.2 I 0.625
TCM_000062 Theobroma cacao TCM_000062 I 0.625
TCM_034409 Theobroma cacao TCM_034409 I 0.629
Traes_3AL_D0053C177 Triticum aestivum Traes_3AL_D0053C177 I 0.621
Traes_3AS_9079D6B71 Triticum aestivum Traes_3AS_9079D6B71 I 0.599
TRAES3BF057600060CFD_g Triticum aestivum TRAES3BF057600060CFD_g I 0.621
TRAES3BF091200090CFD_g Triticum aestivum TRAES3BF091200090CFD_g I 0.621
PRUPE_ppa021400mg Prunus persica PRUPE_ppa021400mg I 0.625
PRUPE_ppa011225mg Prunus persica PRUPE_ppa011225mg I 0.625
OBART01G35170 Oryza barthii OBART01G35170 I 0.625
OLONG_016784 Oryza longistaminata OLONG_016784 I 0.625
OMERI01G32310 Oryza meridionalis OMERI01G32310 I 0.625
ONIVA01G40180 Oryza nivara ONIVA01G40180 I 0.625
OPUNC01G34140 Oryza punctata OPUNC01G34140 I 0.625
ORGLA01G0290300 Oryza glaberrima ORGLA01G0290300 I 0.625
ORUFI01G38500 Oryza rufipogon ORUFI01G38500 I 0.625
WOX8 Oryza sativa OS01G0818400 I 0.625
PGSC0003DMG400001565 Solanum tuberosum PGSC0003DMG400001565 I 0.625
POPTR_0002s00980 Populus trichocarpa POPTR_0002s00980 I 0.615
HB-4 Populus trichocarpa POPTR_0005s10480 I 0.625
POPTR_0005s27410 Populus trichocarpa POPTR_0005s27410 I 0.615
TRAES3BF091200100CFD_g Triticum aestivum TRAES3BF091200100CFD_g I 0.621
OSTLU_27102 Ostreococcus lucimarinus OSTLU_27102 N 0.626
gw1.13.333.1 Ostreococcus RCC809 gw1.13.333.1 N 0.609