TF Information

XP_002163970.1 *(Hydra magnipapillata)* Homeodomain
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF00046 (Homeobox)	IPR001356	XP_002163970.1	T231077_2.00	Superfamily (2010-Oct-26)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
Hoxc11 M00390_2.00	Mus musculus	NTTWAYDDBN	NVHHRTWAAN	PBM Berger et al.(2008) Hoxc11_3718	0.696	0.491
Hoxd11 M00493_2.00	Mus musculus	DDDNNNNN	NNNNNHHH	PBM Berger et al.(2008) Hoxd11_3873	0.696	0.491
HOXC11 M03131_2.00	Homo sapiens	NWTTWAYGAYH	DRTCRTWAAWN	SELEX Jolma et al.(2013) HOXC11_1	0.696	0.491
HOXC11 M03132_2.00	Homo sapiens	NWTTWATKRBH	DVYMATWAAWN	SELEX Jolma et al.(2013) HOXC11_2	0.696	0.491
HOXC11 M03133_2.00	Homo sapiens	DRTCGTWAAWN	NWTTWACGAYH	SELEX Jolma et al.(2013) HOXC11_3	0.696	0.491
HOXC11 M03134_2.00	Homo sapiens	NTTTTATKRBN	NVYMATAAAAN	SELEX Jolma et al.(2013) HOXC11_4	0.696	0.491
HOXD11 M03139_2.00	Homo sapiens	RTCGTAAAWH	DWTTTACGAY	SELEX Jolma et al.(2013) HOXD11_1	0.696	0.491
HOXD11 M03140_2.00	Homo sapiens	TTTWATKRBH	DVYMATWAAA	SELEX Jolma et al.(2013) HOXD11_2	0.696	0.491
HOXD11 M05120_2.00	Homo sapiens	NRTCGTWAANNDTWAH	DTWAHNNTTWACGAYN	SELEX Yin et al.(2017) HOXD11_eDBD_HT-SELEX	0.696	0.491
HOXC11 M05075_2.00	Homo sapiens	NDTTWACGAYN	NRTCGTWAAHN	SELEX Yin et al.(2017) HOXC11_eDBD_HT-SELEX_1	0.696	0.491
HOXC11 M05076_2.00	Homo sapiens	NWTTWATKRCH	DGYMATWAAWN	SELEX Yin et al.(2017) HOXC11_eDBD_HT-SELEX_2	0.696	0.491
HOXC11 M05079_2.00	Homo sapiens	NRTCGTWAAHN	NDTTWACGAYN	SELEX Yin et al.(2017) HOXC11_FL_HT-SELEX_1	0.696	0.491
HOXC11 M05080_2.00	Homo sapiens	NDTTWATKRSN	NSYMATWAAHN	SELEX Yin et al.(2017) HOXC11_FL_HT-SELEX_2	0.696	0.491
HOXD11 M05121_2.00	Homo sapiens	NRTCGTWAAHNDTWAH	DTWAHNDTTWACGAYN	SELEX Yin et al.(2017) HOXD11_eDBD_Methyl-HT-SELEX	0.696	0.491
HOXC11 M05077_2.00	Homo sapiens	NRTCGTAAAHN	NDTTTACGAYN	SELEX Yin et al.(2017) HOXC11_eDBD_Methyl-HT-SELEX_1	0.696	0.491
HOXC11 M05078_2.00	Homo sapiens	NDTTTATKRSN	NSYMATAAAHN	SELEX Yin et al.(2017) HOXC11_eDBD_Methyl-HT-SELEX_2	0.696	0.491
HOXC11 M05081_2.00	Homo sapiens	NRTCGTWAANN	NNTTWACGAYN	SELEX Yin et al.(2017) HOXC11_FL_Methyl-HT-SELEX_1	0.696	0.491
HOXC11 M05082_2.00	Homo sapiens	NNTTWAYKRSN	NSYMRTWAANN	SELEX Yin et al.(2017) HOXC11_FL_Methyl-HT-SELEX_2	0.696	0.491
Hoxa11 M00474_2.00	Mus musculus	NNHNHNNNN	NNNNDNDNN	PBM Berger et al.(2008) Hoxa11_2218	0.696	0.474
Hoxa11 M03274_2.00	Mus musculus	NNDTTWAYGABN	NVTCRTWAAHNN	SELEX Jolma et al.(2013) Hoxa11_1	0.696	0.474
Hoxa11 M03275_2.00	Mus musculus	NDTTWATKRNN	NNYMATWAAHN	SELEX Jolma et al.(2013) Hoxa11_2	0.696	0.474
HOXA11 M04897_2.00	Homo sapiens	VGTCGTAAAWH	DWTTTACGACB	SELEX Yin et al.(2017) HOXA11_eDBD_HT-SELEX_1	0.696	0.474
HOXA11 M04898_2.00	Homo sapiens	DDTTWATKRSN	NSYMATWAAHH	SELEX Yin et al.(2017) HOXA11_eDBD_HT-SELEX_2	0.696	0.474
HOXA11 M04899_2.00	Homo sapiens	NRTCGTAAAWH	DWTTTACGAYN	SELEX Yin et al.(2017) HOXA11_eDBD_Methyl-HT-SELEX_1	0.696	0.474
HOXA11 M04900_2.00	Homo sapiens	DYTTTATKRCH	DGYMATAAARH	SELEX Yin et al.(2017) HOXA11_eDBD_Methyl-HT-SELEX_2	0.696	0.474
Hoxb9 M00410_2.00	Mus musculus	NTTWAYDDNN	NNHHRTWAAN	PBM Berger et al.(2008) Hoxb9_3413	0.683	0.632
HOXB9 M05289_2.00	Homo sapiens	RTCRTAAAWN	NWTTTAYGAY	SELEX Yin et al.(2017) HOXB9_eDBD_HT-SELEX_1	0.683	0.632
HOXB9 M05290_2.00	Homo sapiens	NTTTWATKRC	GYMATWAAAN	SELEX Yin et al.(2017) HOXB9_eDBD_HT-SELEX_2	0.683	0.632
HOXB9 M05291_2.00	Homo sapiens	GTCGTAAAHB	VDTTTACGAC	SELEX Yin et al.(2017) HOXB9_eDBD_Methyl-HT-SELEX	0.683	0.632
Hoxa9 M00475_2.00	Mus musculus	NNDDBNNN	NNNVHHNN	PBM Berger et al.(2008) Hoxa9_2622	0.683	0.614
HOXA9 M03085_2.00	Homo sapiens	NNDTTWAYGAYN	NRTCRTWAAHNN	SELEX Jolma et al.(2013) HOXA10_1	0.683	0.614
HOXA9 M03086_2.00	Homo sapiens	NDTTWATKRYN	NRYMATWAAHN	SELEX Jolma et al.(2013) HOXA10_2	0.683	0.614
Hoxd9 M03282_2.00	Mus musculus	TTTWATKKB	VMMATWAAA	SELEX Jolma et al.(2013) Hoxd9_1	0.683	0.614
Hoxd9 M03283_2.00	Mus musculus	DWTTWATKRY	RYMATWAAWH	SELEX Jolma et al.(2013) Hoxd9_2	0.683	0.614
Hoxd9 M03284_2.00	Mus musculus	DTTWAYGRB	VYCRTWAAH	SELEX Jolma et al.(2013) Hoxd9_3	0.683	0.614
HOXA9 M04932_2.00	Homo sapiens	NNDWWABKRC	GYMVTWWHNN	SELEX Yin et al.(2017) HOXA9_FL_HT-SELEX_1	0.683	0.614
HOXA9 M04933_2.00	Homo sapiens	NNDTWAYGRB	VYCRTWAHNN	SELEX Yin et al.(2017) HOXA9_FL_HT-SELEX_2	0.683	0.614
HOXC9 M05331_2.00	Homo sapiens	GTCGTAAAAN	NTTTTACGAC	SELEX Yin et al.(2017) HOXC9_FL_HT-SELEX_1	0.683	0.614
HOXC9 M05332_2.00	Homo sapiens	NTTTTATKRC	GYMATAAAAN	SELEX Yin et al.(2017) HOXC9_FL_HT-SELEX_2	0.683	0.614
HOXD9 M05104_2.00	Homo sapiens	NTTTTATKRC	GYMATAAAAN	SELEX Yin et al.(2017) HOXD9_eDBD_HT-SELEX_1	0.683	0.614
HOXD9 M05105_2.00	Homo sapiens	RTCRTAAAWN	NWTTTAYGAY	SELEX Yin et al.(2017) HOXD9_eDBD_HT-SELEX_2	0.683	0.614
HOXD9 M05108_2.00	Homo sapiens	RTCGTAAAWN	NWTTTACGAY	SELEX Yin et al.(2017) HOXD9_FL_HT-SELEX_1	0.683	0.614
HOXD9 M05109_2.00	Homo sapiens	NTTTTATKRC	GYMATAAAAN	SELEX Yin et al.(2017) HOXD9_FL_HT-SELEX_2	0.683	0.614
Hoxa9 M08138_2.00	Mus musculus	TGATTKATKRB	VYMATMAATCA	ChIP-seq Mathelier et al.(2014) MA0594.1	0.683	0.614
HOXA9 M09130_2.00	Homo sapiens	DCATAAAYYRBH	DVYRRTTTATGH	Misc Kulakovskiy et al.(2013) HXA10_HUMAN.H11MO.0.C	0.683	0.614
HOXA9 M09131_2.00	Homo sapiens	HHATAAATCAH	DTGATTTATDD	Misc Kulakovskiy et al.(2013) HXA9_HUMAN.H11MO.0.B	0.683	0.614
HOXC9 M09161_2.00	Homo sapiens	HTTWATKGCH	DGCMATWAAD	Misc Kulakovskiy et al.(2013) HXC9_HUMAN.H11MO.0.C	0.683	0.614
Hoxa9 M09203_2.00	Mus musculus	HHATAAATCAH	DTGATTTATDD	Misc Kulakovskiy et al.(2013) HXA9_MOUSE.H11MO.0.B	0.683	0.614
Hoxa9 M09575_2.00	Mus musculus	WGATTKATDRBY	RVYHATMAATCW	Misc Heinz et al.(2010) HSC-Hoxa9_GSE33509	0.683	0.614
HOXA9 M10642_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HOXA10_Q6	0.683	0.614
HOXA9 M10643_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HOXA9_04	0.683	0.614
HOXA9 M10644_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HOXA9_Q5_01	0.683	0.614
HOXA9 M10645_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HOXA9_Q5	0.683	0.614
HOXD9 M10686_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HOXD9_Q2	0.683	0.614
HOXA9 M04934_2.00	Homo sapiens	NNDTWAYKRC	GYMRTWAHNN	SELEX Yin et al.(2017) HOXA9_FL_Methyl-HT-SELEX_1	0.683	0.614
HOXA9 M04935_2.00	Homo sapiens	NNDTWACGAY	RTCGTWAHNN	SELEX Yin et al.(2017) HOXA9_FL_Methyl-HT-SELEX_2	0.683	0.614
HOXC9 M05333_2.00	Homo sapiens	RTCGTAAAHN	NDTTTACGAY	SELEX Yin et al.(2017) HOXC9_FL_Methyl-HT-SELEX_1	0.683	0.614
HOXC9 M05334_2.00	Homo sapiens	NTTTWATKRC	GYMATWAAAN	SELEX Yin et al.(2017) HOXC9_FL_Methyl-HT-SELEX_2	0.683	0.614
HOXD9 M05106_2.00	Homo sapiens	NNTTWATKRC	GYMATWAANN	SELEX Yin et al.(2017) HOXD9_eDBD_Methyl-HT-SELEX_1	0.683	0.614
HOXD9 M05107_2.00	Homo sapiens	RTCGTAAANN	NNTTTACGAY	SELEX Yin et al.(2017) HOXD9_eDBD_Methyl-HT-SELEX_2	0.683	0.614
HOXD9 M05110_2.00	Homo sapiens	RTCGTAAANN	NNTTTACGAY	SELEX Yin et al.(2017) HOXD9_FL_Methyl-HT-SELEX_1	0.683	0.614
HOXD9 M05111_2.00	Homo sapiens	NDTTWATKRC	GYMATWAAHN	SELEX Yin et al.(2017) HOXD9_FL_Methyl-HT-SELEX_2	0.683	0.614
Hoxc9 M00470_2.00	Mus musculus	NGTAATWAAN	NTTWATTACN	PBM Berger et al.(2008) Hoxc9_2367	0.675	0.596
Hoxc9 M08137_2.00	Mus musculus	NWGATTTATDGSH	DSCHATAAATCWN	ChIP-seq Mathelier et al.(2014) MA0485.1	0.675	0.596
Hoxc9 M09574_2.00	Mus musculus	TGATTTATDGCH	DGCHATAAATCA	Misc Heinz et al.(2010) Ainv15-Hoxc9_GSE21812	0.675	0.596
Hoxa10 M00382_2.00	Mus musculus	NHWAYNNNN	NNNNRTWDN	PBM Berger et al.(2008) Hoxa10_2318	0.655	0.544
HOXA10 M05394_2.00	Homo sapiens	RRTCGTAAAAH	DTTTTACGAYY	SELEX Yin et al.(2017) HOXA10_eDBD_HT-SELEX_1	0.655	0.544
HOXA10 M05395_2.00	Homo sapiens	NTTTTATKRCY	RGYMATAAAAN	SELEX Yin et al.(2017) HOXA10_eDBD_HT-SELEX_2	0.655	0.544
HOXA10 M05398_2.00	Homo sapiens	NRTCRTWAANN	NNTTWAYGAYN	SELEX Yin et al.(2017) HOXA10_FL_HT-SELEX_1	0.655	0.544
HOXA10 M05399_2.00	Homo sapiens	NNTTWATKRCN	NGYMATWAANN	SELEX Yin et al.(2017) HOXA10_FL_HT-SELEX_2	0.655	0.544
Hoxa10 M09170_2.00	Mus musculus	DCATAAAYYRBH	DVYRRTTTATGH	Misc Kulakovskiy et al.(2013) HXA10_MOUSE.H11MO.0.C	0.655	0.544
Hoxa10 M10763_2.00	Mus musculus	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HOXA10_Q5	0.655	0.544
HOXA10 M05396_2.00	Homo sapiens	NGTCGTAAAWN	NWTTTACGACN	SELEX Yin et al.(2017) HOXA10_eDBD_Methyl-HT-SELEX_1	0.655	0.544
HOXA10 M05397_2.00	Homo sapiens	NTTTTATKRCB	VGYMATAAAAN	SELEX Yin et al.(2017) HOXA10_eDBD_Methyl-HT-SELEX_2	0.655	0.544
HOXA10 M05400_2.00	Homo sapiens	NRTCGTWAANN	NNTTWACGAYN	SELEX Yin et al.(2017) HOXA10_FL_Methyl-HT-SELEX_1	0.655	0.544
HOXA10 M05401_2.00	Homo sapiens	NNTTWATKRYN	NRYMATWAANN	SELEX Yin et al.(2017) HOXA10_FL_Methyl-HT-SELEX_2	0.655	0.544
Hoxc10 M00421_2.00	Mus musculus	TTWATKAB	VTMATWAA	PBM Berger et al.(2008) Hoxc10_2779	0.655	0.526
Hoxd10 M00509_2.00	Mus musculus	NNNNNNNN	NNNNNNNN	PBM Berger et al.(2008) Hoxd10_2368	0.655	0.526
HOXC10 M03228_2.00	Homo sapiens	DTTTWATKDB	VHMATWAAAH	SELEX Jolma et al.(2013) HOXC10_1	0.655	0.526
HOXC10 M03229_2.00	Homo sapiens	NNTTWATKRB	VYMATWAANN	SELEX Jolma et al.(2013) HOXC10_2	0.655	0.526
HOXC10 M03230_2.00	Homo sapiens	NWTTWAYGAB	VTCRTWAAWN	SELEX Jolma et al.(2013) HOXC10_3	0.655	0.526
Hoxc10 M03252_2.00	Mus musculus	DTTTWAYGAY	RTCRTWAAAH	SELEX Jolma et al.(2013) Hoxc10_1	0.655	0.526
Hoxc10 M03253_2.00	Mus musculus	DTTTWATKRY	RYMATWAAAH	SELEX Jolma et al.(2013) Hoxc10_2	0.655	0.526
HOXC10 M05335_2.00	Homo sapiens	NDTTTATKRCN	NGYMATAAAHN	SELEX Yin et al.(2017) HOXC10_eDBD_HT-SELEX_1	0.655	0.526
HOXC10 M05336_2.00	Homo sapiens	NRTCGTAAAHN	NDTTTACGAYN	SELEX Yin et al.(2017) HOXC10_eDBD_HT-SELEX_2	0.655	0.526
HOXC10 M05339_2.00	Homo sapiens	NTTTTATKRCN	NGYMATAAAAN	SELEX Yin et al.(2017) HOXC10_FL_HT-SELEX_1	0.655	0.526
HOXC10 M05340_2.00	Homo sapiens	NRTCGTAAAWN	NWTTTACGAYN	SELEX Yin et al.(2017) HOXC10_FL_HT-SELEX_2	0.655	0.526
HOXD10 M05112_2.00	Homo sapiens	NKTTTATKRC	GYMATAAAMN	SELEX Yin et al.(2017) HOXD10_eDBD_HT-SELEX_1	0.655	0.526
HOXD10 M05113_2.00	Homo sapiens	RTCGTAAAHN	NDTTTACGAY	SELEX Yin et al.(2017) HOXD10_eDBD_HT-SELEX_2	0.655	0.526
HOXD10 M05116_2.00	Homo sapiens	RGTCGTAAAAH	DTTTTACGACY	SELEX Yin et al.(2017) HOXD10_FL_HT-SELEX_1	0.655	0.526
HOXD10 M05117_2.00	Homo sapiens	RRYMATAAAAH	DTTTTATKRYY	SELEX Yin et al.(2017) HOXD10_FL_HT-SELEX_2	0.655	0.526
HOXD10 M10687_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HOXD10_Q2	0.655	0.526
HOXD10 M10688_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HOXD10_Q6	0.655	0.526
HOXC10 M05337_2.00	Homo sapiens	NTTTTATKRCN	NGYMATAAAAN	SELEX Yin et al.(2017) HOXC10_eDBD_Methyl-HT-SELEX_1	0.655	0.526
HOXC10 M05338_2.00	Homo sapiens	NRTCGTAAAHN	NDTTTACGAYN	SELEX Yin et al.(2017) HOXC10_eDBD_Methyl-HT-SELEX_2	0.655	0.526
HOXC10 M05341_2.00	Homo sapiens	DTTTTATKRCH	DGYMATAAAAH	SELEX Yin et al.(2017) HOXC10_FL_Methyl-HT-SELEX_1	0.655	0.526
HOXC10 M05342_2.00	Homo sapiens	VGTCGTAAAHN	NDTTTACGACB	SELEX Yin et al.(2017) HOXC10_FL_Methyl-HT-SELEX_2	0.655	0.526
HOXD10 M05114_2.00	Homo sapiens	NTTTTATKRC	GYMATAAAAN	SELEX Yin et al.(2017) HOXD10_eDBD_Methyl-HT-SELEX_1	0.655	0.526
HOXD10 M05115_2.00	Homo sapiens	GTCGTAAAHN	NDTTTACGAC	SELEX Yin et al.(2017) HOXD10_eDBD_Methyl-HT-SELEX_2	0.655	0.526
HOXD10 M05118_2.00	Homo sapiens	VGTCGTAAAAH	DTTTTACGACB	SELEX Yin et al.(2017) HOXD10_FL_Methyl-HT-SELEX_1	0.655	0.526
HOXD10 M05119_2.00	Homo sapiens	DGYAATAAAAH	DTTTTATTRCH	SELEX Yin et al.(2017) HOXD10_FL_Methyl-HT-SELEX_2	0.655	0.526
Dfd M03784_2.00	Drosophila melanogaster	VNTAAYKRBN	NVYMRTTANB	SELEX Nitta et al.(2015) Dfd_1	0.618	0.632
Dfd M03785_2.00	Drosophila melanogaster	VYTAATKAYN	NRTMATTARB	SELEX Nitta et al.(2015) Dfd_2	0.618	0.632
Dfd M06481_2.00	Drosophila melanogaster	YTAATGA	TCATTAR	B1H Mathelier et al.(2014) MA0186.1	0.618	0.632
Dfd M06226_2.00	Drosophila melanogaster	VYTAATGA	TCATTAAB	B1H Zhu et al.(2011) Dfd_Cell_FBgn0000439	0.618	0.632
Dfd M06227_2.00	Drosophila melanogaster	TTAATKRY	RYMATTAA	B1H Zhu et al.(2011) Dfd_FlyReg_FBgn0000439	0.618	0.632
Dfd M06228_2.00	Drosophila melanogaster	NBTAATKR	YMATTAVN	B1H Zhu et al.(2011) Dfd_SOLEXA_FBgn0000439	0.618	0.632
Dfd M09675_2.00	Drosophila melanogaster	TTAATKRB	VYMATTAA	Misc Kulakovskiy et al.(2009) Dfd	0.618	0.632
Dfd M10784_2.00	Drosophila melanogaster	NNNNRKTAATNNNNNN	NNNNNNATTAMYNNNN	Transfac Matys et al.(2006) I$DFD_01	0.618	0.632
Q24780_9CNID M02205_2.00	Eleutheria dichotoma	NNYTAATTAMN	NKTAATTARNN	PBM Weirauch et al.(2014) pTH6308	0.615	0.509
For this family, TFs with SR scores > 0.599* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
XP_002163970.1	Homeodomain	162	218	FRKRCSFGHSKIIELEKEFKYNKYLSRDRRVEFARNLELSESQIKIWFQNRRMKQKK

Links
Other Homeodomain family TFs
Other *Hydra magnipapillata* TFs

Invalid Input OrderBy

732 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action

XP_002163970.1 (Hydra magnipapillata) Homeodomain

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

732 Related TFs

Invalid Input OrderBy

XP_002163970.1 **(Hydra magnipapillata)
Homeodomain**