CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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XP_002491722.1
(
Pichia pastoris
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00046 (Homeobox)
IPR001356
XP_002491722.1
T231086_2.00
Superfamily (2010-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
YHP1
M02191_2.00
Saccharomyces cerevisiae
NWWATKRNN
NNYMATWWN
PBM
Weirauch et al.(2014)
pTH6381
0.698
0.561
YHP1
M08423_2.00
Saccharomyces cerevisiae
TAATTG
CAATTA
ChIP-chip
Mathelier et al.(2014)
MA0426.1
0.698
0.561
YHP1
M08573_2.00
Saccharomyces cerevisiae
WNTAATTR
YAATTANW
Misc
DeBoer et al.(2011)
YDR451C_716
0.698
0.561
YHP1
M10797_2.00
Saccharomyces cerevisiae
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
F$YHP1_01
0.698
0.561
YOX1
M00058_2.00
Saccharomyces cerevisiae
HTWAATTR
YAATTWAD
PBM
Badis et al.(2008)
YOX1_2073
0.670
0.526
YOX1
M01552_2.00
Saccharomyces cerevisiae
BWWATDR
YHATWWV
PBM
Zhu et al.(2009)
Yox1
0.670
0.526
YOX1
M07487_2.00
Saccharomyces cerevisiae
YTAATTWN
NWAATTAR
PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0433.1
0.670
0.526
YOX1
M08575_2.00
Saccharomyces cerevisiae
YTAATTWN
NWAATTAR
Misc
DeBoer et al.(2011)
YML027W_498
0.670
0.526
yox1
M02174_2.00
Schizosaccharomyces pombe
NNHHATDDNN
NNHHATDDNN
PBM
Weirauch et al.(2014)
pTH6057
0.611
0.421
For this family, TFs with SR scores >
0.599
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
XP_002491722.1
Homeodomain
152
208
RRKRRRTSPAELFILKEEFSKGSTPNRARRKEISRRVNMTDKAVQVWFQNRRQSMRK
Links
Other
Homeodomain
family TFs
Other
Pichia pastoris
TFs
95 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
PAS_chr2-1_0784
Komagataella pastoris
PAS_chr2-1_0784
I
0.867
YALI0_E20449g
Yarrowia lipolytica
YALI0_E20449g
I
0.789
Scas_Contig641.12
Saccharomyces castellii
Scas_Contig641.12
I
0.786
NCAS_0H02770
Naumovozyma castellii
NCAS_0H02770
I
0.786
AGOS_AER314W
Ashbya gossypii
AGOS_AER314W
I
0.781
AACERI_AaceriAER314W
Saccharomycetaceae sp ashbya aceri
AACERI_AaceriAER314W
I
0.781
estExt_fgenesh1_pm.C_chr_5.10316
Pichia stipitis
estExt_fgenesh1_pm.C_chr_5.10316
I
0.772
PICST_65833
Scheffersomyces stipitis
PICST_65833
I
0.772
NDAI_0C00850
Naumovozyma dairenensis
NDAI_0C00850
I
0.771
HPODL_02118
Ogataea parapolymorpha
HPODL_02118
I
0.770
CANTEDRAFT_113041
Candida tenuis
CANTEDRAFT_113041
I
0.770
G210_2310
Candida maltosa
G210_2310
I
0.770
SAKL0G05896g
Lachancea kluyveri
SAKL0G05896g
I
0.767
KUCA_T00000773001
Kuraishia capsulata
KUCA_T00000773001
I
0.767
SPAPADRAFT_57590
Spathaspora passalidarum
SPAPADRAFT_57590
I
0.767
CD36_70900
Candida dubliniensis
CD36_70900
I
0.765
CTRG_04888
Candida tropicalis
CTRG_04888
I
0.765
LELG_05443
Lodderomyces elongisporus
LELG_05443
I
0.765
CaO19.7017
Candida albicans
CaO19.7017
I
0.765
DEHA2F22286g
Debaryomyces hansenii
DEHA2F22286g
I
0.765
GNLVRS01_PISO0M03048g
Millerozyma farinosa
GNLVRS01_PISO0M03048g
I
0.759
GNLVRS01_PISO0N03203g
Millerozyma farinosa
GNLVRS01_PISO0N03203g
I
0.759
KNAG_0B03460
Kazachstania naganishii
KNAG_0B03460
I
0.750
CLUG_04271
Candida lusitaniae
CLUG_04271
I
0.748
CLUG_04271
Clavispora lusitaniae
CLUG_04271
I
0.748
Kwal_18450
Kluyveromyces waltii
Kwal_18450
I
0.742
KLTH0G04686g
Lachancea thermotolerans
KLTH0G04686g
I
0.742
KLTH0G04686g
Kluyveromyces thermotolerans
KLTH0G04686g
I
0.742
JL09_g4323
Pichia kudriavzevii
JL09_g4323
I
0.736
ZBAI_03698
Zygosaccharomyces bailii
ZBAI_03698
I
0.733
ZBAI_09382
Zygosaccharomyces bailii
ZBAI_09382
I
0.733
TBLA_0E02960
Tetrapisispora blattae
TBLA_0E02960
I
0.731
LALA0_S09e00364g
Lachancea lanzarotensis
LALA0_S09e00364g
I
0.730
CAGL0G07249g
Candida glabrata
CAGL0G07249g
I
0.724
Ecym_4103
Eremothecium cymbalariae
Ecym_4103
I
0.722
ZYRO0D13596g
Zygosaccharomyces rouxii
ZYRO0D13596g
I
0.717
CORT_0H00310
Candida orthopsilosis
CORT_0H00310
I
0.714
PGUG_00382
Meyerozyma guilliermondii
PGUG_00382
I
0.714
CPAG_00635
Candida parapsilosis
CPAG_00635
I
0.714
PGUG_00382
Candida guilliermondii
PGUG_00382
I
0.714
BN7_6497
Wickerhamomyces ciferrii
BN7_6497
I
0.708
Kpol_1004p50
Vanderwaltozyma polyspora
Kpol_1004p50
I
0.699
YHP1
Saccharomyces cerevisiae
YDR451C
D
0.698
SU7_2763
Saccharomyces arboricola
SU7_2763
I
0.698
5594_YDR451C
Saccharomyces paradoxus
5594_YDR451C
I
0.698
SKUD_123402
Saccharomyces kudriavzevii
SKUD_123402
I
0.698
5231_YDR451C
Saccharomyces mikatae
5231_YDR451C
I
0.698
5532_YDR451C
Saccharomyces bayanus
5532_YDR451C
I
0.698
TPHA_0K00360
Tetrapisispora phaffii
TPHA_0K00360
I
0.691
KAFR_0C05600
Kazachstania africana
KAFR_0C05600
I
0.690
SPPG_04779
Spizellomyces punctatus
SPPG_04779
I
0.690
TPHA_0D02630
Tetrapisispora phaffii
TPHA_0D02630
I
0.685
TDEL_0A04320
Torulaspora delbrueckii
TDEL_0A04320
I
0.679
KLLA0_B01584g
Kluyveromyces lactis
KLLA0_B01584g
I
0.674
SU7_2475
Saccharomyces arboricola
SU7_2475
I
0.670
YOX1
Saccharomyces cerevisiae
YML027W
D
0.670
17440_YML027W
Saccharomyces paradoxus
17440_YML027W
I
0.670
SOCG_04925
Schizosaccharomyces octosporus
SOCG_04925
I
0.666
GSTUM_00011138001
Tuber melanosporum
GSTUM_00011138001
I
0.664
MVLG_02993
Microbotryum violaceum
MVLG_02993
I
0.661
M438DRAFT_345498
Aureobasidium pullulans
M438DRAFT_345498
I
0.651
M437DRAFT_82573
Aureobasidium melanogenum
M437DRAFT_82573
I
0.651
AUEXF2481DRAFT_40998
Aureobasidium subglaciale
AUEXF2481DRAFT_40998
I
0.651
RHTO_03185
Rhodosporidium toruloides
RHTO_03185
I
0.650
BOTBODRAFT_25870
Botryobasidium botryosum
BOTBODRAFT_25870
I
0.650
PV09_05311
Verruconis gallopava
PV09_05311
I
0.650
PNEG_03146
Pneumocystis murina
PNEG_03146
I
0.647
SPPG_01429
Spizellomyces punctatus
SPPG_01429
I
0.647
PIIN_05295
Piriformospora indica
PIIN_05295
I
0.647
PredSwiss_CON591.1
Pneumocystis carinii
PredSwiss_CON591.1
I
0.647
fgenesh1_pg.C_scaffold_6000346
Sporobolomyces roseus
fgenesh1_pg.C_scaffold_6000346
N
0.646
SPOG_04875
Schizosaccharomyces cryophilus
SPOG_04875
I
0.643
AOL_s00075g18
Arthrobotrys oligospora
AOL_s00075g18
I
0.638
J056_000182
Wallemia ichthyophaga
J056_000182
I
0.635
FIBRA_04336
Fibroporia radiculosa
FIBRA_04336
I
0.634
DOTSEDRAFT_142040
Dothistroma septosporum
DOTSEDRAFT_142040
I
0.625
Kpol_1023p80
Vanderwaltozyma polyspora
Kpol_1023p80
I
0.623
PLEOSDRAFT_1075550
Pleurotus ostreatus
PLEOSDRAFT_1075550
I
0.619
PHSY_003201
Pseudozyma hubeiensis
PHSY_003201
I
0.616
PSEUBRA_SCAF1g00359
Pseudozyma brasiliensis
PSEUBRA_SCAF1g00359
I
0.616
sr11633
Sporisorium reilianum
sr11633
I
0.616
RO3G_03673
Rhizopus oryzae
RO3G_03673
I
0.616
fgeneshMC_pg.10_#_259
Mucor circinelloides
fgeneshMC_pg.10_#_259
I
0.616
UHOR_00441
Ustilago hordei
UHOR_00441
I
0.616
AMAG_08574
Allomyces macrogynus
AMAG_08574
N
0.613
PaG_01825
Pseudozyma aphidis
PaG_01825
I
0.612
H072_1197
Dactylellina haptotyla
H072_1197
I
0.611
SJAG_01157
Schizosaccharomyces japonicus
SJAG_01157
I
0.611
yox1
Schizosaccharomyces pombe
SPBC21B10.13c
D
0.611
AMAG_09998
Allomyces macrogynus
AMAG_09998
N
0.605
gw1.54.52.1
Phycomyces blakesleeanus
gw1.54.52.1
I
0.605
DRE_07453
Drechslerella stenobrocha
DRE_07453
I
0.604
M407DRAFT_21315
Tulasnella calospora
M407DRAFT_21315
I
0.604
DACRYDRAFT_108097
Dacryopinax sp
DACRYDRAFT_108097
I
0.600
fgeneshPB_pg.5__518
Phycomyces blakesleeanus
fgeneshPB_pg.5__518
I
0.600