CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
augustus_masked-nMf.1.1.scaf01005-processed-gene-0.1
(
Meloidogyne floridensis
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00046 (Homeobox)
IPR001356
augustus_masked-nMf.1.1.scaf01005-processed-gene-0.1
T233184_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
CBG00023
M02062_2.00
Caenorhabditis briggsae
NWWATKDNNN
NNNHMATWWN
PBM
Weirauch et al.(2014)
pTH5778
0.711
0.579
egl-5
M09581_2.00
Caenorhabditis elegans
DWTTWATGGS
SCCATWAAWH
Misc
Heinz et al.(2010)
cElegans-L3-EGL5_modEncode
0.711
0.579
Hoxc8
M00391_2.00
Mus musculus
NNDNYNNNN
NNNNRNHNN
PBM
Berger et al.(2008)
Hoxc8_3429
0.672
0.491
Hoxb8
M00517_2.00
Mus musculus
NWWAYNDNN
NNHNRTWWN
PBM
Berger et al.(2008)
Hoxb8_3780
0.672
0.491
HOXB8
M05048_2.00
Homo sapiens
NTAATKRM
KYMATTAN
SELEX
Yin et al.(2017)
HOXB8_eDBD_HT-SELEX
0.672
0.491
HOXC8
M04912_2.00
Homo sapiens
NYAATTRN
NYAATTRN
SELEX
Yin et al.(2017)
HOXC8_FL_HT-SELEX
0.672
0.491
HOXB8
M09141_2.00
Homo sapiens
BMATHAATCAA
TTGATTDATKV
Misc
Kulakovskiy et al.(2013)
HXB8_HUMAN.H11MO.0.C
0.672
0.491
Hoxb8
M09214_2.00
Mus musculus
BMATHAATCAA
TTGATTDATKV
Misc
Kulakovskiy et al.(2013)
HXB8_MOUSE.H11MO.0.C
0.672
0.491
HOXC8
M10636_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HOXC8_Q3
0.672
0.491
HOXB8
M05049_2.00
Homo sapiens
NTAATKRN
NYMATTAN
SELEX
Yin et al.(2017)
HOXB8_eDBD_Methyl-HT-SELEX_1
0.672
0.491
HOXB8
M05050_2.00
Homo sapiens
NTAAYGAY
RTCRTTAN
SELEX
Yin et al.(2017)
HOXB8_eDBD_Methyl-HT-SELEX_2
0.672
0.491
HOXC8
M04913_2.00
Homo sapiens
NYMATKRN
NYMATKRN
SELEX
Yin et al.(2017)
HOXC8_FL_Methyl-HT-SELEX_1
0.672
0.491
HOXC8
M04914_2.00
Homo sapiens
NTWAYGRY
RYCRTWAN
SELEX
Yin et al.(2017)
HOXC8_FL_Methyl-HT-SELEX_2
0.672
0.491
HOXB7
M00334_2.00
Homo sapiens
NBRDNNN
NNNHYVN
PBM
Barrera et al.(2016)
HOXB7_REF
0.670
0.491
Hoxb6
M00381_2.00
Mus musculus
NNDHNNN
NNNDHNN
PBM
Berger et al.(2008)
Hoxb6_3428
0.670
0.491
Hoxa7
M00476_2.00
Mus musculus
NNWAYNDNN
NNHNRTWNN
PBM
Berger et al.(2008)
Hoxa7_2668
0.670
0.491
Hoxa7
M00477_2.00
Mus musculus
NYHHYNNNN
NNNNRDDRN
PBM
Berger et al.(2008)
Hoxa7_3750
0.670
0.491
Hoxb7
M00481_2.00
Mus musculus
NNWAYNDN
NHNRTWNN
PBM
Berger et al.(2008)
Hoxb7_3953
0.670
0.491
Hoxa6
M00494_2.00
Mus musculus
NWWATKRNN
NNYMATWWN
PBM
Berger et al.(2008)
Hoxa6_1040
0.670
0.491
Ubx
M00558_2.00
Drosophila melanogaster
NWWAYDDNN
NNHHRTWWN
PBM
Busser et al.(2012a)
Ubx
0.670
0.491
abd-A
M03770_2.00
Drosophila melanogaster
NNTAATKRCN
NGYMATTANN
SELEX
Nitta et al.(2015)
abd-A_1
0.670
0.491
abd-A
M03771_2.00
Drosophila melanogaster
NNTAATKRCN
NGYMATTANN
SELEX
Nitta et al.(2015)
abd-A_2
0.670
0.491
Ubx
M03804_2.00
Drosophila melanogaster
NTAATKRH
DYMATTAN
SELEX
Nitta et al.(2015)
Ubx_1
0.670
0.491
HOXA6
M04974_2.00
Homo sapiens
NNTAATKRVN
NBYMATTANN
SELEX
Yin et al.(2017)
HOXA6_eDBD_HT-SELEX
0.670
0.491
HOXA7
M05069_2.00
Homo sapiens
NTAATKRV
BYMATTAN
SELEX
Yin et al.(2017)
HOXA7_eDBD_HT-SELEX
0.670
0.491
HOXB6
M04999_2.00
Homo sapiens
NTAATKRY
RYMATTAN
SELEX
Yin et al.(2017)
HOXB6_eDBD_HT-SELEX
0.670
0.491
HOXB7
M05404_2.00
Homo sapiens
BTAATKRV
BYMATTAV
SELEX
Yin et al.(2017)
HOXB7_eDBD_HT-SELEX
0.670
0.491
HOXB7
M05407_2.00
Homo sapiens
BBTAATTRCN
NGYAATTAVV
SELEX
Yin et al.(2017)
HOXB7_FL_HT-SELEX
0.670
0.491
abd-A
M06475_2.00
Drosophila melanogaster
TTAATKA
TMATTAA
B1H
Mathelier et al.(2014)
MA0206.1
0.670
0.491
Ubx
M06499_2.00
Drosophila melanogaster
NTTAATKR
YMATTAAN
B1H
Mathelier et al.(2014)
MA0094.2
0.670
0.491
Antp
M06549_2.00
Drosophila melanogaster
TTAATKA
TMATTAA
B1H
Mathelier et al.(2014)
MA0166.1
0.670
0.491
abd-A
M06210_2.00
Drosophila melanogaster
WTWATKDM
KHMATWAW
B1H
Zhu et al.(2011)
Abd-A_FlyReg_FBgn0000014
0.670
0.491
Antp
M06374_2.00
Drosophila melanogaster
YTTAATKA
TMATTAAR
B1H
Zhu et al.(2011)
Antp_Cell_FBgn0000095
0.670
0.491
Antp
M06375_2.00
Drosophila melanogaster
WTAATW
AATTAW
B1H
Zhu et al.(2011)
Antp_FlyReg_FBgn0000095
0.670
0.491
Antp
M06376_2.00
Drosophila melanogaster
NHTAATKR
YMATTADN
B1H
Zhu et al.(2011)
Antp_SOLEXA_FBgn0000095
0.670
0.491
Ubx
M06273_2.00
Drosophila melanogaster
NTTAATKR
YMATTAAN
B1H
Zhu et al.(2011)
Ubx_Cell_FBgn0003944
0.670
0.491
Ubx
M06274_2.00
Drosophila melanogaster
TAATKD
HMATTA
B1H
Zhu et al.(2011)
Ubx_FlyReg_FBgn0003944
0.670
0.491
Ubx
M06275_2.00
Drosophila melanogaster
NTTWATKR
YMATWAAN
B1H
Zhu et al.(2011)
Ubx_SOLEXA_FBgn0003944
0.670
0.491
HOXB7
M09166_2.00
Homo sapiens
MATHAATCAW
WTGATTDATK
Misc
Kulakovskiy et al.(2013)
HXB7_HUMAN.H11MO.0.C
0.670
0.491
Hoxb7
M09206_2.00
Mus musculus
MATHAATCAW
WTGATTDATK
Misc
Kulakovskiy et al.(2013)
HXB7_MOUSE.H11MO.0.C
0.670
0.491
abd-A
M09671_2.00
Drosophila melanogaster
HTAATKRH
DYMATTAD
Misc
Kulakovskiy et al.(2009)
abd-A
0.670
0.491
Antp
M09682_2.00
Drosophila melanogaster
TYTTWATKA
TMATWAARA
Misc
Kulakovskiy et al.(2009)
Antp
0.670
0.491
Ubx
M09680_2.00
Drosophila melanogaster
TTAATKR
YMATTAA
Misc
Kulakovskiy et al.(2009)
Ubx
0.670
0.491
abd-A
M10778_2.00
Drosophila melanogaster
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
I$ABDA_Q6
0.670
0.491
Antp
M10789_2.00
Drosophila melanogaster
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
I$ANTP_Q6_01
0.670
0.491
Ubx
M10788_2.00
Drosophila melanogaster
NNVNNNNTAATKRNBHNND
HNNDVNYMATTANNNNBNN
Transfac
Matys et al.(2006)
I$UBX_01
0.670
0.491
HOXA7
M10679_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HOXA7_01
0.670
0.491
HOXA6
M04975_2.00
Homo sapiens
NNTAATKRBN
NVYMATTANN
SELEX
Yin et al.(2017)
HOXA6_eDBD_Methyl-HT-SELEX_1
0.670
0.491
HOXA6
M04976_2.00
Homo sapiens
NTAAYGRY
RYCRTTAN
SELEX
Yin et al.(2017)
HOXA6_eDBD_Methyl-HT-SELEX_2
0.670
0.491
HOXA7
M05070_2.00
Homo sapiens
NTAATKRN
NYMATTAN
SELEX
Yin et al.(2017)
HOXA7_eDBD_Methyl-HT-SELEX_1
0.670
0.491
HOXA7
M05071_2.00
Homo sapiens
NTAAYGAY
RTCRTTAN
SELEX
Yin et al.(2017)
HOXA7_eDBD_Methyl-HT-SELEX_2
0.670
0.491
HOXB6
M05000_2.00
Homo sapiens
HTAAYGAY
RTCRTTAD
SELEX
Yin et al.(2017)
HOXB6_eDBD_Methyl-HT-SELEX_1
0.670
0.491
HOXB6
M05001_2.00
Homo sapiens
NTWATKRB
VYMATWAN
SELEX
Yin et al.(2017)
HOXB6_eDBD_Methyl-HT-SELEX_2
0.670
0.491
HOXB7
M05405_2.00
Homo sapiens
BTAATKRV
BYMATTAV
SELEX
Yin et al.(2017)
HOXB7_eDBD_Methyl-HT-SELEX_1
0.670
0.491
HOXB7
M05406_2.00
Homo sapiens
NTAAYGAY
RTCRTTAN
SELEX
Yin et al.(2017)
HOXB7_eDBD_Methyl-HT-SELEX_2
0.670
0.491
HOXB7
M05408_2.00
Homo sapiens
NNTAATKRCN
NGYMATTANN
SELEX
Yin et al.(2017)
HOXB7_FL_Methyl-HT-SELEX_1
0.670
0.491
HOXB7
M05409_2.00
Homo sapiens
NTAAYGAY
RTCRTTAN
SELEX
Yin et al.(2017)
HOXB7_FL_Methyl-HT-SELEX_2
0.670
0.491
Hoxd8
M00436_2.00
Mus musculus
NNWWYNNN
NNNRWWNN
PBM
Berger et al.(2008)
Hoxd8_2644
0.670
0.474
HOXD8
M03221_2.00
Homo sapiens
VHWAATKWDN
NHWMATTWDB
SELEX
Jolma et al.(2013)
HOXD8_1
0.670
0.474
HOXD8
M05310_2.00
Homo sapiens
BTAATKRY
RYMATTAV
SELEX
Yin et al.(2017)
HOXD8_eDBD_HT-SELEX
0.670
0.474
HOXB7
M00333_2.00
Homo sapiens
NHATWTATTN
NAATAWATDN
PBM
Barrera et al.(2016)
HOXB7_R189C
0.670
0.474
HOXD8
M05311_2.00
Homo sapiens
NTAATKRN
NYMATTAN
SELEX
Yin et al.(2017)
HOXD8_eDBD_Methyl-HT-SELEX_1
0.670
0.474
HOXD8
M05312_2.00
Homo sapiens
NTWAYGRY
RYCRTWAN
SELEX
Yin et al.(2017)
HOXD8_eDBD_Methyl-HT-SELEX_2
0.670
0.474
CBG00029
M01240_2.00
Caenorhabditis briggsae
ATTAATTA
TAATTAAT
PBM
Lambert et al.(2019)
pTH11471
0.666
0.474
ftz
M03795_2.00
Drosophila melanogaster
WTAATTRC
GYAATTAW
SELEX
Nitta et al.(2015)
ftz_1
0.661
0.491
ftz
M06488_2.00
Drosophila melanogaster
TTAATKA
TMATTAA
B1H
Mathelier et al.(2014)
MA0225.1
0.661
0.491
ftz
M06247_2.00
Drosophila melanogaster
VTTAATKA
TMATTAAB
B1H
Zhu et al.(2011)
Ftz_Cell_FBgn0001077
0.661
0.491
ftz
M06248_2.00
Drosophila melanogaster
TAATKRNH
DNYMATTA
B1H
Zhu et al.(2011)
ftz_FlyReg_FBgn0001077
0.661
0.491
ftz
M06249_2.00
Drosophila melanogaster
BTAATKA
TMATTAV
B1H
Zhu et al.(2011)
Ftz_SOLEXA_FBgn0001077
0.661
0.491
ftz
M09679_2.00
Drosophila melanogaster
YTAATKRNN
NNYMATTAR
Misc
Kulakovskiy et al.(2009)
ftz
0.661
0.491
ftz
M10787_2.00
Drosophila melanogaster
CTTAATTRBHBB
VVDVYAATTAAG
Transfac
Matys et al.(2006)
I$FTZ_01
0.661
0.491
Hoxc6
M00392_2.00
Mus musculus
TTAATTAB
VTAATTAA
PBM
Berger et al.(2008)
Hoxc6_3954
0.657
0.474
Q8I9J5_9BILA
M02214_2.00
Spadella cephaloptera
NVTAWTWABN
NVTWAWTABN
PBM
Weirauch et al.(2014)
pTH6164
0.631
0.439
CBG23031
M01245_2.00
Caenorhabditis briggsae
NTTWATKRNN
NNYMATWAAN
PBM
Lambert et al.(2019)
pTH11458
0.627
0.439
Q9GP48_9TURB
M02217_2.00
Discocelis tigrina
DTAATTAB
VTAATTAH
PBM
Weirauch et al.(2014)
pTH6515
0.615
0.421
HOXB7
M00331_2.00
Homo sapiens
NNNNNNY
RNNNNNN
PBM
Barrera et al.(2016)
HOXB7_K191R
0.613
0.474
For this family, TFs with SR scores >
0.599
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
augustus_masked-nMf.1.1.scaf01005-processed-gene-0.1-mRNA-1
Homeodomain
88
144
AGGRQTYNPEQKRTLEEEFRANKYVSKLQRTQLVEKTGLSDKQIKIWFQNRRMKRKK
Links
Other
Homeodomain
family TFs
Other
Meloidogyne floridensis
TFs
820 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy