CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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augustus_masked-nMf.1.1.scaf09384-processed-gene-0.0
(
Meloidogyne floridensis
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00046 (Homeobox)
IPR001356
augustus_masked-nMf.1.1.scaf09384-processed-gene-0.0
T233192_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
pha-2
M02184_2.00
Caenorhabditis elegans
NNNATNDNNN
NNNHNATNNN
PBM
Weirauch et al.(2014)
pTH6423
0.812
0.737
HHEX
M06541_2.00
Drosophila melanogaster
WYBAATWA
TWATTVRW
B1H
Mathelier et al.(2014)
MA0183.1
0.787
0.614
HHEX
M06358_2.00
Drosophila melanogaster
WYBAATWA
TWATTVRW
B1H
Zhu et al.(2011)
CG7056_Cell_FBgn0038852
0.787
0.614
HHEX
M06359_2.00
Drosophila melanogaster
NYBAATWR
YWATTVRN
B1H
Zhu et al.(2011)
CG7056_SOLEXA_FBgn0038852
0.787
0.614
For this family, TFs with SR scores >
0.599
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
augustus_masked-nMf.1.1.scaf09384-processed-gene-0.0-mRNA-1
Homeodomain
63
119
KGGQIRFSNEQTDILERTFDAKMYLSTQERKRISRALKLSERQVKTWFQNRRAKYRR
Links
Other
Homeodomain
family TFs
Other
Meloidogyne floridensis
TFs
156 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy