TF Information

csin108972 *(Clonorchis sinensis)* Homeodomain
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF00046 (Homeobox)	IPR001356	csin108972	T233378_2.00	WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
O76842_CUPSA M02199_2.00	Cupiennius salei	TTAATTAB	VTAATTAA	PBM Weirauch et al.(2014) pTH6251	0.669	0.839
HOXB1 M05057_2.00	Homo sapiens	NTAATTAS	STAATTAN	SELEX Yin et al.(2017) HOXB1_eDBD_HT-SELEX	0.665	0.786
HOXB1 M05058_2.00	Homo sapiens	GTAATBAN	NTVATTAC	SELEX Yin et al.(2017) HOXB1_eDBD_Methyl-HT-SELEX_1	0.665	0.786
HOXB1 M05059_2.00	Homo sapiens	NTRAYGMB	VKCRTYAN	SELEX Yin et al.(2017) HOXB1_eDBD_Methyl-HT-SELEX_2	0.665	0.786
lab M03797_2.00	Drosophila melanogaster	NTAATTAS	STAATTAN	SELEX Nitta et al.(2015) lab_1	0.650	0.911
lab M06493_2.00	Drosophila melanogaster	TTAATKA	TMATTAA	B1H Mathelier et al.(2014) MA0230.1	0.650	0.911
lab M06260_2.00	Drosophila melanogaster	TTAATKA	TMATTAA	B1H Zhu et al.(2011) Lab_Cell_FBgn0002522	0.650	0.911
lab M06261_2.00	Drosophila melanogaster	YTAATKA	TMATTAR	B1H Zhu et al.(2011) Lab_SOLEXA_FBgn0002522	0.650	0.911
Hoxd1 M00492_2.00	Mus musculus	NRATNDNN	NNHNATYN	PBM Berger et al.(2008) Hoxd1_3448	0.644	0.821
HOXD1 M05098_2.00	Homo sapiens	BTAATTAV	BTAATTAV	SELEX Yin et al.(2017) HOXD1_eDBD_HT-SELEX	0.644	0.821
Hoxd1 M10768_2.00	Mus musculus	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HOXD1_03	0.644	0.821
HOXD1 M05099_2.00	Homo sapiens	BTAATKAV	BTMATTAV	SELEX Yin et al.(2017) HOXD1_eDBD_Methyl-HT-SELEX_1	0.644	0.821
HOXD1 M05100_2.00	Homo sapiens	NTWAYGAB	VTCRTWAN	SELEX Yin et al.(2017) HOXD1_eDBD_Methyl-HT-SELEX_2	0.644	0.821
Hoxa1 M00450_2.00	Mus musculus	NHRATKRNN	NNYMATYDN	PBM Berger et al.(2008) Hoxa1_3425	0.633	0.821
HOXA1 M03096_2.00	Homo sapiens	NNTAATTRNN	NNYAATTANN	SELEX Jolma et al.(2013) HOXA1_1	0.633	0.821
HOXA1 M04959_2.00	Homo sapiens	NTMATKAN	NTMATKAN	SELEX Yin et al.(2017) HOXA1_FL_HT-SELEX	0.633	0.821
HOXA1 M09133_2.00	Homo sapiens	NKGATGGATG	CATCCATCMN	Misc Kulakovskiy et al.(2013) HXA1_HUMAN.H11MO.0.C	0.633	0.821
Hoxa1 M09196_2.00	Mus musculus	NKGATGGATG	CATCCATCMN	Misc Kulakovskiy et al.(2013) HXA1_MOUSE.H11MO.0.C	0.633	0.821
HOXA1 M04960_2.00	Homo sapiens	NTMATKAN	NTMATKAN	SELEX Yin et al.(2017) HOXA1_FL_Methyl-HT-SELEX_1	0.633	0.821
HOXA1 M04961_2.00	Homo sapiens	NTAAYGAB	VTCRTTAN	SELEX Yin et al.(2017) HOXA1_FL_Methyl-HT-SELEX_2	0.633	0.821
CaO19.4000 M02061_2.00	Candida albicans	NNDWATWRN	NYWATWHNN	PBM Weirauch et al.(2014) pTH5822	0.618	0.411
Hoxd3 M00531_2.00	Mus musculus	NTAATNDN	NHNATTAN	PBM Berger et al.(2008) Hoxd3_1742	0.603	0.696
Hoxa3 M00172_2.00	Mus musculus	NTAATKRNNN	NNNYMATTAN	PBM Badis et al.(2009) Hoxa3_2783	0.603	0.696
Hoxa3 M00532_2.00	Mus musculus	NTAATKRNN	NNYMATTAN	PBM Berger et al.(2008) Hoxa3_2783	0.603	0.696
Hoxd3 M03287_2.00	Mus musculus	NNTAATKRNN	NNYMATTANN	SELEX Jolma et al.(2013) Hoxd3_1	0.603	0.696
HOXD3 M05101_2.00	Homo sapiens	CTAATTAS	STAATTAG	SELEX Yin et al.(2017) HOXD3_FL_HT-SELEX	0.603	0.696
HOXA3 M10651_2.00	Homo sapiens	SVTWNDDKB	VMHHNWABS	Transfac Matys et al.(2006) V$HOXA3_01	0.603	0.696
HOXD3 M05102_2.00	Homo sapiens	YTAAYGAY	RTCRTTAR	SELEX Yin et al.(2017) HOXD3_FL_Methyl-HT-SELEX_1	0.603	0.696
HOXD3 M05103_2.00	Homo sapiens	CTAATKAC	GTMATTAG	SELEX Yin et al.(2017) HOXD3_FL_Methyl-HT-SELEX_2	0.603	0.696
Hoxb3 M00504_2.00	Mus musculus	NTAATKRNN	NNYMATTAN	PBM Berger et al.(2008) Hoxb3_1720	0.603	0.679
HOXB3 M03126_2.00	Homo sapiens	NBTAATKRNN	NNYMATTAVN	SELEX Jolma et al.(2013) HOXB3_1	0.603	0.679
For this family, TFs with SR scores > 0.599* will likely have a similar motif*