D917_00900 (Trichinella nativa)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 D917_00900 T233470_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Dbx
M02128_2.00
Drosophila melanogaster
WTTAATTA

TAATTAAW
PBM
Weirauch et al.(2014)
pTH6051
0.657 0.750
Dbx
M06550_2.00
Drosophila melanogaster
TTWATKA

TMATWAA
B1H
Mathelier et al.(2014)
MA0174.1
0.657 0.750
Dbx1
M00451_2.00
Mus musculus
WTTAATTA

TAATTAAW
PBM
Berger et al.(2008)
Dbx1_3486
0.657 0.732
Dbx2
M00499_2.00
Mus musculus
NNDTNNN

NNNAHNN
PBM
Berger et al.(2008)
Dbx2_3487
0.633 0.696
Q0N4H7_NEMVE
M02164_2.00
Nematostella vectensis
NNDAYNDNNN

NNNHNRTHNN
PBM
Weirauch et al.(2014)
pTH6472
0.625 0.500
Q0N4H2_NEMVE
M02163_2.00
Nematostella vectensis
TAATYRVT

ABYRATTA
PBM
Weirauch et al.(2014)
pTH6303
0.621 0.411
NEMVEDRAFT_v1g114268
M02145_2.00
Nematostella vectensis
WTAATBGRT

AYCVATTAW
PBM
Weirauch et al.(2014)
pTH6514
0.619 0.464
Hlx
M00485_2.00
Mus musculus
NNNAWND

HNWTNNN
PBM
Berger et al.(2008)
Hlx1_2350
0.617 0.696
H2.0
M06489_2.00
Drosophila melanogaster
WTWATDA

THATWAW
B1H
Mathelier et al.(2014)
MA0448.1
0.616 0.696
H2.0
M06250_2.00
Drosophila melanogaster
TWWWWDA

THAWWWA
B1H
Zhu et al.(2011)
H2.0_Cell_FBgn0001170
0.616 0.696
H2.0
M06251_2.00
Drosophila melanogaster
WTWATTRN

NYAATWAW
B1H
Zhu et al.(2011)
H2.0_SOLEXA_FBgn0001170
0.616 0.696
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
D917_00900 Homeodomain 10 65

Links

Other Homeodomain family TFs
Other Trichinella nativa TFs

Invalid Input OrderBy

291 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action