D918_08902 (Trichuris suis)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 D918_08902 T233577_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ceh-24
M02181_2.00
Caenorhabditis elegans
NNRAKWRNN

NNYWMTYNN
PBM
Weirauch et al.(2014)
pTH6327
0.853 0.877
Nkx2-1
M00385_2.00
Mus musculus
NNRAGDRN

NYHCTYNN
PBM
Berger et al.(2008)
Titf1_1722
0.849 0.930
Nkx2-4
M00514_2.00
Mus musculus
NNRAGDRBNN

NNVYHCTYNN
PBM
Berger et al.(2008)
Nkx2-4_3074
0.849 0.930
NKX2-1
M09146_2.00
Homo sapiens
BTKGAGWGBN

NVCWCTCMAV
Misc
Kulakovskiy et al.(2013)
NKX21_HUMAN.H11MO.0.A
0.849 0.930
Nkx2-1
M09171_2.00
Mus musculus
NBTKGAGWGB

VCWCTCMAVN
Misc
Kulakovskiy et al.(2013)
NKX21_MOUSE.H11MO.0.A
0.849 0.930
Nkx2-1
M09563_2.00
Mus musculus
BTBRAGWGBH

DVCWCTYVAV
Misc
Heinz et al.(2010)
LungAC-Nkx2.1_GSE43252
0.849 0.930
NKX2-1
M10694_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TITF1_Q3
0.849 0.930
NKX2-1
M10695_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TTF1_Q5_01
0.849 0.930
NKX2-1
M10696_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TTF1_Q5
0.849 0.930
NKX2-1
M10697_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TTF1_Q6
0.849 0.930
scro
M03854_2.00
Drosophila melanogaster
NNBRMGTGB

VCACKYVNN
SELEX
Nitta et al.(2015)
scro_1
0.848 0.930
NKX2-5
M00323_2.00
Homo sapiens
NWYAAGTGSNN

NNSCACTTRWN
PBM
Barrera et al.(2016)
NKX2-5_REF
0.803 0.807
Nkx2-5
M00404_2.00
Mus musculus
NNNRAGDRBN

NVYHCTYNNN
PBM
Berger et al.(2008)
Nkx2-5_3436
0.803 0.807
NKX2-5
M05346_2.00
Homo sapiens
BHYAAGTGBN

NVCACTTRDV
SELEX
Yin et al.(2017)
NKX2-5_FL_HT-SELEX
0.803 0.807
Nkx2-5
M02686_2.00
Mus musculus
WTAAKWK

MWMTTAW
SELEX
Mathelier et al.(2014)
MA0063.1
0.803 0.807
Nkx2-5
M08136_2.00
Mus musculus
SYTGAGWGSYH

DRSCWCTCARS
ChIP-seq
Mathelier et al.(2014)
MA0503.1
0.803 0.807
NKX2-5
M09163_2.00
Homo sapiens
BKRAGWGV

BCWCTYMV
Misc
Kulakovskiy et al.(2013)
NKX25_HUMAN.H11MO.0.B
0.803 0.807
Nkx2-5
M09177_2.00
Mus musculus
NBYBRAGTGS

SCACTYVRVN
Misc
Kulakovskiy et al.(2013)
NKX25_MOUSE.H11MO.0.A
0.803 0.807
Nkx2-5
M09567_2.00
Mus musculus
HBRAGWGBNN

NNVCWCTYVD
Misc
Heinz et al.(2010)
HL1-Nkx2.5.biotin_GSE21529
0.803 0.807
NKX2-5
M10742_2.00
Homo sapiens
TYAAGTG

CACTTRA
Transfac
Matys et al.(2006)
V$NKX25_01
0.803 0.807
NKX2-5
M10743_2.00
Homo sapiens
CWTAATTV

BAATTAWG
Transfac
Matys et al.(2006)
V$NKX25_02
0.803 0.807
NKX2-5
M10744_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$NKX25_Q5
0.803 0.807
NKX2-5
M10745_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$NKX25_Q6
0.803 0.807
NKX2-5
M00321_2.00
Homo sapiens
HNAAGTRBNN

NNVYACTTND
PBM
Barrera et al.(2016)
NKX2-5_R161P
0.803 0.807
NKX2-5
M05347_2.00
Homo sapiens
BTYAAGTGGN

NCCACTTRAV
SELEX
Yin et al.(2017)
NKX2-5_FL_Methyl-HT-SELEX_1
0.803 0.807
NKX2-5
M05348_2.00
Homo sapiens
BTYAACGAB

VTCGTTRAV
SELEX
Yin et al.(2017)
NKX2-5_FL_Methyl-HT-SELEX_2
0.803 0.807
NKX2-5
M00322_2.00
Homo sapiens
NNNRNNN

NNNYNNN
PBM
Barrera et al.(2016)
NKX2-5_R190C
0.803 0.789
NKX2-5
M00324_2.00
Homo sapiens
NHNNNNN

NNNNNDN
PBM
Barrera et al.(2016)
NKX2-5_T178M
0.803 0.789
Nkx2-3
M00497_2.00
Mus musculus
NNRAGDRNN

NNYHCTYNN
PBM
Berger et al.(2008)
Nkx2-3_3435
0.801 0.825
NKX2-3
M05042_2.00
Homo sapiens
NNBAAGTGBN

NVCACTTVNN
SELEX
Yin et al.(2017)
NKX2-3_eDBD_HT-SELEX
0.801 0.825
NKX2-3
M05045_2.00
Homo sapiens
BNBAAGTGBN

NVCACTTVNV
SELEX
Yin et al.(2017)
NKX2-3_FL_HT-SELEX
0.801 0.825
NKX2-3
M05043_2.00
Homo sapiens
BNBAAGTGBN

NVCACTTVNV
SELEX
Yin et al.(2017)
NKX2-3_eDBD_Methyl-HT-SELEX_1
0.801 0.825
NKX2-3
M05044_2.00
Homo sapiens
SDYAACGHB

VDCGTTRHS
SELEX
Yin et al.(2017)
NKX2-3_eDBD_Methyl-HT-SELEX_2
0.801 0.825
NKX2-3
M05046_2.00
Homo sapiens
BNBAAGTGBN

NVCACTTVNV
SELEX
Yin et al.(2017)
NKX2-3_FL_Methyl-HT-SELEX_1
0.801 0.825
NKX2-3
M05047_2.00
Homo sapiens
SWYAACSHB

VDSGTTRWS
SELEX
Yin et al.(2017)
NKX2-3_FL_Methyl-HT-SELEX_2
0.801 0.825
ceh-28
M08210_2.00
Caenorhabditis elegans
AATCGATW

WATCGATT
ChIP-seq
Contrino et al.(2012)
Mw138
0.797 0.737
vnd
M06551_2.00
Drosophila melanogaster
WYTCAAGTR

YACTTGARW
B1H
Mathelier et al.(2014)
MA0253.1
0.782 0.860
vnd
M06377_2.00
Drosophila melanogaster
WYTCAAGTR

YACTTGARW
B1H
Zhu et al.(2011)
Vnd_Cell_FBgn0003986
0.782 0.860
vnd
M06378_2.00
Drosophila melanogaster
KYTSAAGWGY

RCWCTTSARM
B1H
Zhu et al.(2011)
vnd_FlyReg_FBgn0003986
0.782 0.860
vnd
M06379_2.00
Drosophila melanogaster
BTBAAGTR

YACTTVAV
B1H
Zhu et al.(2011)
Vnd_SOLEXA_FBgn0003986
0.782 0.860
vnd
M09683_2.00
Drosophila melanogaster
TCAAGTGB

VCACTTGA
Misc
Kulakovskiy et al.(2009)
vnd
0.782 0.860
Nkx2-2
M00438_2.00
Mus musculus
NNNRAGDRN

NYHCTYNNN
PBM
Berger et al.(2008)
Nkx2-2_2823
0.782 0.842
Nkx2-2
M09190_2.00
Mus musculus
NTBRAGWGBBN

NVVCWCTYVAN
Misc
Kulakovskiy et al.(2013)
NKX22_MOUSE.H11MO.0.A
0.782 0.842
NKX2-2
M10681_2.00
Homo sapiens
WTAAGTRBTT

AAVYACTTAW
Transfac
Matys et al.(2006)
V$NKX22_01
0.782 0.842
NKX2-2
M10682_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$NKX2B_Q3_01
0.782 0.842
NKX2-2
M10683_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$NKX2B_Q3
0.782 0.842
Nkx2-9
M00520_2.00
Mus musculus
NNNRAGDRBN

NVYHCTYNNN
PBM
Berger et al.(2008)
Nkx2-9_3082
0.775 0.789
Nkx2-9
M00800_2.00
Mus musculus
NNRAGDRBNN

NNVYHCTYNN
PBM
Weirauch et al.(2013)
pTH2842
0.775 0.789
Nkx2-9
M09215_2.00
Mus musculus
BTCAAGKRB

VYMCTTGAV
Misc
Kulakovskiy et al.(2013)
NKX28_MOUSE.H11MO.0.C
0.775 0.789
tin
M00559_2.00
Drosophila melanogaster
NWYAAGTGGNN

NNCCACTTRWN
PBM
Busser et al.(2012a)
Tin
0.772 0.684
tin
M03809_2.00
Drosophila melanogaster
BTYAAGTGSN

NSCACTTRAV
SELEX
Nitta et al.(2015)
tin_1
0.772 0.684
tin
M06284_2.00
Drosophila melanogaster
BTYAAGTG

CACTTRAV
B1H
Zhu et al.(2011)
Tin_Cell_FBgn0004110
0.772 0.684
tin
M06285_2.00
Drosophila melanogaster
BCTCAAGTGSVN

NBSCACTTGAGV
B1H
Zhu et al.(2011)
tin_FlyReg_FBgn0004110
0.772 0.684
tin
M06286_2.00
Drosophila melanogaster
BWYAAGTR

YACTTRWV
B1H
Zhu et al.(2011)
Tin_SOLEXA_FBgn0004110
0.772 0.684
tin
M08421_2.00
Drosophila melanogaster
DBTCRAGTGS

SCACTYGAVH
ChIP-chip
Mathelier et al.(2014)
MA0247.2
0.772 0.684
NKX2-5
M00320_2.00
Homo sapiens
NHBAAKWRN

NYWMTTVDN
PBM
Barrera et al.(2016)
NKX2-5_K183E
0.770 0.789
Nkx2-6
M00496_2.00
Mus musculus
HYAAGTRBNN

NNVYACTTRD
PBM
Berger et al.(2008)
Nkx2-6_3437
0.763 0.754
ceh-22
M00376_2.00
Caenorhabditis elegans
WBRAGTRBNN

NNVYACTYVW
PBM
Berger et al.(2006)
Ceh-22
0.761 0.825
NKX2-8
M00302_2.00
Homo sapiens
NNRAGDRB

VYHCTYNN
PBM
Barrera et al.(2016)
NKX2-8_REF
0.743 0.772
NKX2-8
M05149_2.00
Homo sapiens
BTSRAGTGBN

NVCACTYSAV
SELEX
Yin et al.(2017)
NKX2-8_FL_HT-SELEX
0.743 0.772
NKX2-8
M09145_2.00
Homo sapiens
BTCAAGKRB

VYMCTTGAV
Misc
Kulakovskiy et al.(2013)
NKX28_HUMAN.H11MO.0.C
0.743 0.772
NKX2-8
M05150_2.00
Homo sapiens
GCARTAACGACATC

GATGTCGTTAYTGC
SELEX
Yin et al.(2017)
NKX2-8_FL_Methyl-HT-SELEX_1
0.743 0.772
NKX2-8
M05151_2.00
Homo sapiens
BTSAAGTGBN

NVCACTTSAV
SELEX
Yin et al.(2017)
NKX2-8_FL_Methyl-HT-SELEX_2
0.743 0.772
NKX2-8
M05152_2.00
Homo sapiens
BTBAACGAB

VTCGTTVAV
SELEX
Yin et al.(2017)
NKX2-8_FL_Methyl-HT-SELEX_3
0.743 0.772
NKX2-8
M00301_2.00
Homo sapiens
NNRAKDRB

VYHMTYNN
PBM
Barrera et al.(2016)
NKX2-8_A94T
0.743 0.754
Q24782_9CNID
M02206_2.00
Eleutheria dichotoma
TTAATTAA

TTAATTAA
PBM
Weirauch et al.(2014)
pTH5486
0.600 0.509
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
D918_08902 Homeodomain 202 258

Links

Other Homeodomain family TFs
Other Trichuris suis TFs

836 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
GATA24 Arabidopsis thaliana AT3G21175 D 0.000
OS06G0698900 Oryza sativa OS06G0698900 D 0.000
ZIM Arabidopsis thaliana AT4G24470 D 0.000
GATA28 Arabidopsis thaliana AT1G51600 D 0.000
fgenesh2_pm.scaffold_111000001 Physcomitrella patens fgenesh2_pm.scaffold_111000001 I 0.000
Cla013127 Citrullus lanatus Cla013127 I 0.000
Cla015736 Citrullus lanatus Cla015736 I 0.000
Pm013048 Prunus mume Pm013048 I 0.000
Pm022163 Prunus mume Pm022163 I 0.000
29838.m001724 Ricinus communis 29838.m001724 I 0.000
cassava12169.valid.m1 Manihot esculenta cassava12169.valid.m1 I 0.000
Cucsa.218190 Cucumis sativus Cucsa.218190 I 0.000
Cucsa.359570 Cucumis sativus Cucsa.359570 I 0.000
e_gw1.226.30.1 Physcomitrella patens e_gw1.226.30.1 I 0.000
fgenesh1_pm.scaffold_69000012 Physcomitrella patens fgenesh1_pm.scaffold_69000012 I 0.000
cassava6876.valid.m1 Manihot esculenta cassava6876.valid.m1 I 0.000
Ca_01471 Cicer arietinum Ca_01471 I 0.000
VIT_09s0054g00440 Vitis vinifera VIT_09s0054g00440 I 0.000
SELMODRAFT_423855 Selaginella moellendorffii SELMODRAFT_423855 I 0.000
Si006750m.g Setaria italica Si006750m.g I 0.000
TCM_007360 Theobroma cacao TCM_007360 I 0.000
TCM_027858 Theobroma cacao TCM_027858 I 0.000
Traes_6AS_4106E8E28 Triticum aestivum Traes_6AS_4106E8E28 I 0.000
Traes_6BS_AB5909D02 Triticum aestivum Traes_6BS_AB5909D02 I 0.000
Traes_6DS_6268D31AE Triticum aestivum Traes_6DS_6268D31AE I 0.000
Ca_17522 Cicer arietinum Ca_17522 I 0.000
Traes_7AL_EA6F4FFDE Triticum aestivum Traes_7AL_EA6F4FFDE I 0.000
Traes_7DL_A5ECEDA95 Triticum aestivum Traes_7DL_A5ECEDA95 I 0.000
TRIUR3_11107 Triticum urartu TRIUR3_11107 I 0.000
TRIUR3_32095 Triticum urartu TRIUR3_32095 I 0.000
gw1.68.123.1 Physcomitrella patens gw1.68.123.1 I 0.000
mgf016112m Mimulus guttatus mgf016112m I 0.000
Gorai.008G017800 Gossypium raimondii Gorai.008G017800 I 0.000
orange1.1g022728m.g Citrus sinensis orange1.1g022728m.g I 0.000
Pavir.Da00166 Panicum virgatum Pavir.Da00166 I 0.000
Pavir.Db00254 Panicum virgatum Pavir.Db00254 I 0.000
SapurV1A.0036s1170 Salix purpurea SapurV1A.0036s1170 I 0.000
SapurV1A.0187s0150 Salix purpurea SapurV1A.0187s0150 I 0.000
Thhalv10011695m.g Eutrema salsugineum Thhalv10011695m.g I 0.000
Thhalv10020970m.g Eutrema salsugineum Thhalv10020970m.g I 0.000
Thhalv10025795m.g Eutrema salsugineum Thhalv10025795m.g I 0.000
PK11000.1 Cannabis sativa PK11000.1 I 0.000
LjSGA_067759.1 Lotus japonicus LjSGA_067759.1 I 0.000
PDK_20s1340921g001 Phoenix dactylifera PDK_20s1340921g001 I 0.000
evm.TU.supercontig_155.28 Carica papaya evm.TU.supercontig_155.28 I 0.000
Eucgr.J03166 Eucalyptus grandis Eucgr.J03166 I 0.000
Aquca_007_00522 Aquilegia coerulea Aquca_007_00522 I 0.000
Aquca_010_00250 Aquilegia coerulea Aquca_010_00250 I 0.000
Aquca_018_00034 Aquilegia coerulea Aquca_018_00034 I 0.000
Bostr.26675s0048 Boechera stricta Bostr.26675s0048 I 0.000
Bostr.7867s0254 Boechera stricta Bostr.7867s0254 I 0.000
Cagra.1757s0004 Capsella grandiflora Cagra.1757s0004 I 0.000
Cagra.2171s0014 Capsella grandiflora Cagra.2171s0014 I 0.000
Cagra.2346s0015 Capsella grandiflora Cagra.2346s0015 I 0.000
Carubv10006355m.g Capsella rubella Carubv10006355m.g I 0.000
Carubv10009866m.g Capsella rubella Carubv10009866m.g I 0.000
Carubv10016131m.g Capsella rubella Carubv10016131m.g I 0.000
Ciclev10027306m.g Citrus clementina Ciclev10027306m.g I 0.000
PDK_20s1879741g001 Phoenix dactylifera PDK_20s1879741g001 I 0.000
SELMODRAFT_177195 Selaginella moellendorffii SELMODRAFT_177195 I 0.000
BGIOSGA007539 Oryza indica BGIOSGA007539 I 0.000
GLYMA08G23720 Glycine max GLYMA08G23720 I 0.000
GRMZM2G058479 Zea mays GRMZM2G058479 I 0.000
GRMZM2G080509 Zea mays GRMZM2G080509 I 0.000
GSMUA_Achr10G06260_001 Musa acuminata GSMUA_Achr10G06260_001 I 0.000
GSMUA_Achr2G04520_001 Musa acuminata GSMUA_Achr2G04520_001 I 0.000
GSMUA_Achr3G05620_001 Musa acuminata GSMUA_Achr3G05620_001 I 0.000
GSMUA_Achr7G08720_001 Musa acuminata GSMUA_Achr7G08720_001 I 0.000
GSMUA_Achr9G13870_001 Musa acuminata GSMUA_Achr9G13870_001 I 0.000
LPERR02G03330 Leersia perrieri LPERR02G03330 I 0.000
LPERR06G21800 Leersia perrieri LPERR06G21800 I 0.000
LPERR11G14110 Leersia perrieri LPERR11G14110 I 0.000
TIFY1 Arabidopsis lyrata fgenesh2_kg.7__1832__AT4G24470.2 I 0.000
ZML1 Arabidopsis lyrata fgenesh2_kg.3__2338__AT3G21175.1 I 0.000
F775_08559 Aegilops tauschii F775_08559 I 0.000
BGIOSGA020596 Oryza indica BGIOSGA020596 I 0.000
Bo1g039000 Brassica oleracea Bo1g039000 I 0.000
Bo1g108240 Brassica oleracea Bo1g108240 I 0.000
Bo3g181450 Brassica oleracea Bo3g181450 I 0.000
Bo5g103560 Brassica oleracea Bo5g103560 I 0.000
Bra013805 Brassica rapa Bra013805 I 0.000
Bra014292 Brassica rapa Bra014292 I 0.000
Bra023900 Brassica rapa Bra023900 I 0.000
Bra031258 Brassica rapa Bra031258 I 0.000
BRADI1G33980 Brachypodium distachyon BRADI1G33980 I 0.000
BRADI3G03800 Brachypodium distachyon BRADI3G03800 I 0.000
MLOC_17061 Hordeum vulgare MLOC_17061 I 0.000
MLOC_3107 Hordeum vulgare MLOC_3107 I 0.000
MTR_3g100050 Medicago truncatula MTR_3g100050 I 0.000
ORGLA02G0035000 Oryza glaberrima ORGLA02G0035000 I 0.000
ORGLA06G0219100 Oryza glaberrima ORGLA06G0219100 I 0.000
ORUFI02G03830 Oryza rufipogon ORUFI02G03830 I 0.000
ORUFI06G28170 Oryza rufipogon ORUFI06G28170 I 0.000
GATA17 Oryza sativa OS02G0148500 I 0.000
POPTR_0007s03130 Populus trichocarpa POPTR_0007s03130 I 0.000
POPTR_0010s25810 Populus trichocarpa POPTR_0010s25810 I 0.000
POPTR_0017s06980 Populus trichocarpa POPTR_0017s06980 I 0.000
PRUPE_ppa009401mg Prunus persica PRUPE_ppa009401mg I 0.000
PRUPE_ppa009709mg Prunus persica PRUPE_ppa009709mg I 0.000
Sb10g028750 Sorghum bicolor Sb10g028750 I 0.000
OPUNC06G23830 Oryza punctata OPUNC06G23830 I 0.000
OPUNC02G02970 Oryza punctata OPUNC02G02970 I 0.000
ONIVA06G28780 Oryza nivara ONIVA06G28780 I 0.000
MTR_4g008070 Medicago truncatula MTR_4g008070 I 0.000
OB02G13220 Oryza brachyantha OB02G13220 I 0.000
OB06G33840 Oryza brachyantha OB06G33840 I 0.000
OBART02G03780 Oryza barthii OBART02G03780 I 0.000
OBART06G26250 Oryza barthii OBART06G26250 I 0.000
OGLUM02G03560 Oryza glumaepatula OGLUM02G03560 I 0.000
OGLUM06G27650 Oryza glumaepatula OGLUM06G27650 I 0.000
OLONG_015069 Oryza longistaminata OLONG_015069 I 0.000
OMERI02G04610 Oryza meridionalis OMERI02G04610 I 0.000
OMERI06G26410 Oryza meridionalis OMERI06G26410 I 0.000
ONIVA02G03810 Oryza nivara ONIVA02G03810 I 0.000
ZML2 Arabidopsis lyrata scaffold_104929.1 I 0.000