DME_0000365001 (Dracunculus medinensis)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 DME_0000365001 T233697_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MSX2
M00290_2.00 		Homo sapiens
WDATNDNN
NNHNATHW		 PBM
Barrera et al.(2016)
MSX2_REF 		0.640 0.706
Msx2
M00414_2.00 		Mus musculus
HRATKRNN
NNYMATYD		 PBM
Berger et al.(2008)
Msx2_3449 		0.640 0.706
MSX2
M03127_2.00 		Homo sapiens
TAATTRBHWKWTAATTGV
BCAATTAWMWDVYAATTA		 SELEX
Jolma et al.(2013)
MSX2_1 		0.640 0.706
MSX2
M03128_2.00 		Homo sapiens
NTAATTGB
VCAATTAN		 SELEX
Jolma et al.(2013)
MSX2_2 		0.640 0.706
MSX2
M05060_2.00 		Homo sapiens
NTAATTRN
NYAATTAN		 SELEX
Yin et al.(2017)
MSX2_eDBD_HT-SELEX 		0.640 0.706
MSX2
M10677_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$MSX2_Q3 		0.640 0.706
MSX2
M10678_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$MSX2_Q6 		0.640 0.706
MSX2
M05061_2.00 		Homo sapiens
NTAATTRN
NYAATTAN		 SELEX
Yin et al.(2017)
MSX2_eDBD_Methyl-HT-SELEX_1 		0.640 0.706
MSX2
M05062_2.00 		Homo sapiens
NTAAYGAB
VTCRTTAN		 SELEX
Yin et al.(2017)
MSX2_eDBD_Methyl-HT-SELEX_2 		0.640 0.706
Msx3
M00429_2.00 		Mus musculus
TAATKDNN
NNHMATTA		 PBM
Berger et al.(2008)
Msx3_3206 		0.639 0.686
Msx3
M03255_2.00 		Mus musculus
TAATTGSHHNNTAATTRN
NYAATTANNDDSCAATTA		 SELEX
Jolma et al.(2013)
Msx3_1 		0.639 0.686
Msx3
M03256_2.00 		Mus musculus
NTAATTRN
NYAATTAN		 SELEX
Jolma et al.(2013)
Msx3_2 		0.639 0.686
Dr
M00555_2.00 		Drosophila melanogaster
TAATTRNN
NNYAATTA		 PBM
Busser et al.(2012a)
Msh 		0.639 0.686
Dr
M06482_2.00 		Drosophila melanogaster
TAATTGS
SCAATTA		 B1H
Mathelier et al.(2014)
MA0188.1 		0.639 0.686
Dr
M06229_2.00 		Drosophila melanogaster
TAATTGSHB
VDSCAATTA		 B1H
Zhu et al.(2011)
Dr_Cell_FBgn0000492 		0.639 0.686
Dr
M06230_2.00 		Drosophila melanogaster
TAATTR
YAATTA		 B1H
Zhu et al.(2011)
Dr_SOLEXA_FBgn0000492 		0.639 0.686
Msx1
M00501_2.00 		Mus musculus
NHDATND
HNATHDN		 PBM
Berger et al.(2008)
Msx1_3031 		0.639 0.667
MSX1
M03184_2.00 		Homo sapiens
TAATTRBHHNHTAATTRN
NYAATTADNDDVYAATTA		 SELEX
Jolma et al.(2013)
MSX1_1 		0.639 0.667
MSX1
M03185_2.00 		Homo sapiens
NTAATTRN
NYAATTAN		 SELEX
Jolma et al.(2013)
MSX1_2 		0.639 0.667
MSX1
M03186_2.00 		Homo sapiens
NTAATTRN
NYAATTAN		 SELEX
Jolma et al.(2013)
MSX1_3 		0.639 0.667
MSX1
M05221_2.00 		Homo sapiens
NTAATTRV
BYAATTAN		 SELEX
Yin et al.(2017)
MSX1_eDBD_HT-SELEX 		0.639 0.667
MSX1
M05224_2.00 		Homo sapiens
NTAATTRN
NYAATTAN		 SELEX
Yin et al.(2017)
MSX1_FL_HT-SELEX 		0.639 0.667
MSX1
M10715_2.00 		Homo sapiens
HNBTWWNTG
CANWWAVND		 Transfac
Matys et al.(2006)
V$MSX1_01 		0.639 0.667
MSX1
M10716_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$MSX1_Q5_01 		0.639 0.667
MSX1
M10717_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$MSX1_Q5 		0.639 0.667
MSX1
M05222_2.00 		Homo sapiens
NTAATTRN
NYAATTAN		 SELEX
Yin et al.(2017)
MSX1_eDBD_Methyl-HT-SELEX_1 		0.639 0.667
MSX1
M05223_2.00 		Homo sapiens
NTWAYGMB
VKCRTWAN		 SELEX
Yin et al.(2017)
MSX1_eDBD_Methyl-HT-SELEX_2 		0.639 0.667
MSX1
M05225_2.00 		Homo sapiens
NTAATTRN
NYAATTAN		 SELEX
Yin et al.(2017)
MSX1_FL_Methyl-HT-SELEX_1 		0.639 0.667
MSX1
M05226_2.00 		Homo sapiens
NTWAYGWB
VWCRTWAN		 SELEX
Yin et al.(2017)
MSX1_FL_Methyl-HT-SELEX_2 		0.639 0.667
MSX2
M00289_2.00 		Homo sapiens
WDATWDNN
NNHWATHW		 PBM
Barrera et al.(2016)
MSX2_R172H 		0.633 0.686
MSX2
M00288_2.00 		Homo sapiens
NTAATNDN
NHNATTAN		 PBM
Barrera et al.(2016)
MSX2_P148H 		0.627 0.686
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
DME_0000365001-mRNA-1 Homeodomain 147 197

Links

Other Homeodomain family TFs
Other Dracunculus medinensis TFs

Invalid Input OrderBy

480 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action