CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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GPLIN_000062700
(
Globodera pallida
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00046 (Homeobox)
IPR001356
GPLIN_000062700
T234009_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
CG18599
M06539_2.00
Drosophila melanogaster
HTAATKA
TMATTAD
B1H
Mathelier et al.(2014)
MA0177.1
0.709
0.561
CG18599
M06354_2.00
Drosophila melanogaster
HTAATKA
TMATTAD
B1H
Zhu et al.(2011)
CG18599_Cell_FBgn0038592
0.709
0.561
CG18599
M06355_2.00
Drosophila melanogaster
YTAATKA
TMATTAR
B1H
Zhu et al.(2011)
CG18599_SOLEXA_FBgn0038592
0.709
0.561
NEMVEDRAFT_v1g205636
M02150_2.00
Nematostella vectensis
NTAATTAN
NTAATTAN
PBM
Weirauch et al.(2014)
pTH5491
0.690
0.474
NEMVEDRAFT_v1g81309
M02152_2.00
Nematostella vectensis
NTAATDNNN
NNNHATTAN
PBM
Weirauch et al.(2014)
pTH5477
0.661
0.561
Emx2
M00495_2.00
Mus musculus
NTAATDDNN
NNHHATTAN
PBM
Berger et al.(2008)
Emx2_3420
0.658
0.526
EMX2
M03210_2.00
Homo sapiens
NBTAATTANN
NNTAATTAVN
SELEX
Jolma et al.(2013)
EMX2_1
0.658
0.526
EMX2
M03211_2.00
Homo sapiens
YMATTARBTAATKR
YMATTAVYTAATKR
SELEX
Jolma et al.(2013)
EMX2_2
0.658
0.526
EMX2
M05281_2.00
Homo sapiens
YTAATKAB
VTMATTAR
SELEX
Yin et al.(2017)
EMX2_eDBD_HT-SELEX
0.658
0.526
EMX2
M05282_2.00
Homo sapiens
YTAATKAN
NTMATTAR
SELEX
Yin et al.(2017)
EMX2_eDBD_Methyl-HT-SELEX
0.658
0.526
NEMVEDRAFT_v1g8907
M02154_2.00
Nematostella vectensis
NTAATDRNNN
NNNYHATTAN
PBM
Weirauch et al.(2014)
pTH6483
0.652
0.509
E5
M03814_2.00
Drosophila melanogaster
STAATKNN
NNMATTAS
SELEX
Nitta et al.(2015)
E5_1
0.650
0.526
E5
M06507_2.00
Drosophila melanogaster
BTAATKA
TMATTAV
B1H
Mathelier et al.(2014)
MA0189.1
0.650
0.526
E5
M06293_2.00
Drosophila melanogaster
NBTAATKA
TMATTAVN
B1H
Zhu et al.(2011)
E5_Cell_FBgn0008646
0.650
0.526
E5
M06294_2.00
Drosophila melanogaster
NTAATDR
YHATTAN
B1H
Zhu et al.(2011)
E5_SOLEXA_FBgn0008646
0.650
0.526
ems
M02114_2.00
Drosophila melanogaster
NTAATKRNB
VNYMATTAN
PBM
Weirauch et al.(2014)
pTH5673
0.647
0.526
ems
M03789_2.00
Drosophila melanogaster
BTAATTAN
NTAATTAV
SELEX
Nitta et al.(2015)
ems_1
0.647
0.526
ems
M03790_2.00
Drosophila melanogaster
BTAATTAVBVBTAATKRN
NYMATTAVBVBTAATTAV
SELEX
Nitta et al.(2015)
ems_2
0.647
0.526
ems
M03791_2.00
Drosophila melanogaster
BTAATKRN
NYMATTAV
SELEX
Nitta et al.(2015)
ems_3
0.647
0.526
ems
M03792_2.00
Drosophila melanogaster
STAATKRSSSSTAATKRV
BYMATTASSSSYMATTAS
SELEX
Nitta et al.(2015)
ems_4
0.647
0.526
ems
M06484_2.00
Drosophila melanogaster
HTAATKR
YMATTAD
B1H
Mathelier et al.(2014)
MA0219.1
0.647
0.526
ems
M06233_2.00
Drosophila melanogaster
WHTAATKR
YMATTADW
B1H
Zhu et al.(2011)
Ems_Cell_FBgn0000576
0.647
0.526
ems
M06234_2.00
Drosophila melanogaster
TSTMATHM
KDATKASA
B1H
Zhu et al.(2011)
ems_FlyReg_FBgn0000576
0.647
0.526
ems
M06235_2.00
Drosophila melanogaster
YTAATKA
TMATTAR
B1H
Zhu et al.(2011)
Ems_SOLEXA_FBgn0000576
0.647
0.526
ems
M09676_2.00
Drosophila melanogaster
WTWATGA
TCATWAW
Misc
Kulakovskiy et al.(2009)
ems
0.647
0.526
EMX1
M02088_2.00
Homo sapiens
NNTAATKANN
NNTMATTANN
PBM
Weirauch et al.(2014)
pTH5677
0.642
0.509
EMX1
M03151_2.00
Homo sapiens
NBTAATTRNN
NNYAATTAVN
SELEX
Jolma et al.(2013)
EMX1_1
0.642
0.509
EMX1
M03152_2.00
Homo sapiens
YMATTARYTAATKR
YMATTARYTAATKR
SELEX
Jolma et al.(2013)
EMX1_2
0.642
0.509
EMX1
M05145_2.00
Homo sapiens
BTAATTAN
NTAATTAV
SELEX
Yin et al.(2017)
EMX1_eDBD_HT-SELEX
0.642
0.509
EMX1
M05147_2.00
Homo sapiens
BTAATTAV
BTAATTAV
SELEX
Yin et al.(2017)
EMX1_FL_HT-SELEX
0.642
0.509
EMX1
M05146_2.00
Homo sapiens
BTAATTRN
NYAATTAV
SELEX
Yin et al.(2017)
EMX1_eDBD_Methyl-HT-SELEX
0.642
0.509
EMX1
M05148_2.00
Homo sapiens
BTAATTAN
NTAATTAV
SELEX
Yin et al.(2017)
EMX1_FL_Methyl-HT-SELEX
0.642
0.509
VAX2
M00284_2.00
Homo sapiens
NNTAATND
HNATTANN
PBM
Barrera et al.(2016)
VAX2_REF
0.637
0.509
Vax1
M00398_2.00
Mus musculus
NTAATNDNN
NNHNATTAN
PBM
Berger et al.(2008)
Vax1_3499
0.637
0.509
Vax2
M00464_2.00
Mus musculus
NTAATDDNN
NNHHATTAN
PBM
Berger et al.(2008)
Vax2_3500
0.637
0.509
VAX2
M03119_2.00
Homo sapiens
YTAATKAN
NTMATTAR
SELEX
Jolma et al.(2013)
VAX2_1
0.637
0.509
VAX2
M05030_2.00
Homo sapiens
BTAATTRV
BYAATTAV
SELEX
Yin et al.(2017)
VAX2_FL_HT-SELEX
0.637
0.509
Vax1
M10764_2.00
Mus musculus
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$VAX1_04
0.637
0.509
VAX2
M05031_2.00
Homo sapiens
BTAATTRV
BYAATTAV
SELEX
Yin et al.(2017)
VAX2_FL_Methyl-HT-SELEX
0.637
0.509
ceh-5
M02179_2.00
Caenorhabditis elegans
NNTAATDDN
NHHATTANN
PBM
Weirauch et al.(2014)
pTH6562
0.633
0.491
VAX2
M00283_2.00
Homo sapiens
NNTAAWNDNN
NNHNWTTANN
PBM
Barrera et al.(2016)
VAX2_L139M
0.631
0.491
ESX1
M00291_2.00
Homo sapiens
NNTRATNRN
NYNATYANN
PBM
Barrera et al.(2016)
ESX1_K193R
0.629
0.439
Awh
M02121_2.00
Drosophila melanogaster
NNTAATTANN
NNTAATTANN
PBM
Weirauch et al.(2014)
pTH5759
0.621
0.368
Awh
M03831_2.00
Drosophila melanogaster
BTAATTRV
BYAATTAV
SELEX
Nitta et al.(2015)
Awh_1
0.621
0.368
Awh
M06513_2.00
Drosophila melanogaster
YTAATTA
TAATTAR
B1H
Mathelier et al.(2014)
MA0167.1
0.621
0.368
Awh
M06303_2.00
Drosophila melanogaster
YTAATTA
TAATTAR
B1H
Zhu et al.(2011)
Awh_Cell_FBgn0013751
0.621
0.368
Awh
M06304_2.00
Drosophila melanogaster
YTAATKR
YMATTAR
B1H
Zhu et al.(2011)
Awh_SOLEXA_FBgn0013751
0.621
0.368
lim-4
M02182_2.00
Caenorhabditis elegans
YTAATTRVN
NBYAATTAR
PBM
Weirauch et al.(2014)
pTH6366
0.621
0.333
eve
M00556_2.00
Drosophila melanogaster
NNTAATTARN
NYTAATTANN
PBM
Busser et al.(2012a)
Eve
0.613
0.404
eve
M02115_2.00
Drosophila melanogaster
NTAATNDNN
NNHNATTAN
PBM
Weirauch et al.(2014)
pTH6436
0.613
0.404
eve
M03794_2.00
Drosophila melanogaster
VYTAATKASN
NSTMATTARB
SELEX
Nitta et al.(2015)
eve_1
0.613
0.404
eve
M06486_2.00
Drosophila melanogaster
YTAATKA
TMATTAR
B1H
Mathelier et al.(2014)
MA0221.1
0.613
0.404
eve
M06240_2.00
Drosophila melanogaster
DYTAATKA
TMATTARH
B1H
Zhu et al.(2011)
Eve_Cell_FBgn0000606
0.613
0.404
eve
M06241_2.00
Drosophila melanogaster
HKBTAAYNDTKY
RMAHNRTTAVMD
B1H
Zhu et al.(2011)
eve_FlyReg_FBgn0000606
0.613
0.404
eve
M06242_2.00
Drosophila melanogaster
NYTAATKA
TMATTARN
B1H
Zhu et al.(2011)
Eve_SOLEXA_FBgn0000606
0.613
0.404
eve
M09678_2.00
Drosophila melanogaster
NKHTAATKD
HMATTADMN
Misc
Kulakovskiy et al.(2009)
eve
0.613
0.404
eve
M10786_2.00
Drosophila melanogaster
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
I$EVE_Q6
0.613
0.404
zen
M03805_2.00
Drosophila melanogaster
BTAATKRB
VYMATTAV
SELEX
Nitta et al.(2015)
zen_1
0.609
0.439
zen
M06500_2.00
Drosophila melanogaster
YTAATKA
TMATTAR
B1H
Mathelier et al.(2014)
MA0256.1
0.609
0.439
zen
M06276_2.00
Drosophila melanogaster
NBYTAATKA
TMATTARBN
B1H
Zhu et al.(2011)
Zen_Cell_FBgn0004053
0.609
0.439
zen
M06277_2.00
Drosophila melanogaster
AANWTWAWTG
CAWTWAWNTT
B1H
Zhu et al.(2011)
zen_FlyReg_FBgn0004053
0.609
0.439
zen
M06278_2.00
Drosophila melanogaster
NYTAATKA
TMATTARN
B1H
Zhu et al.(2011)
Zen_SOLEXA_FBgn0004053
0.609
0.439
Lhx8
M00534_2.00
Mus musculus
NNTRATKRN
NYMATYANN
PBM
Berger et al.(2008)
Lhx8_2247
0.603
0.333
Lhx8
M03288_2.00
Mus musculus
BYRATYRVNNBTRATYRN
NYRATYAVNNBYRATYRV
SELEX
Jolma et al.(2013)
Lhx8_1
0.603
0.333
Lhx8
M03289_2.00
Mus musculus
BYRATYRV
BYRATYRV
SELEX
Jolma et al.(2013)
Lhx8_2
0.603
0.333
Lhx8
M03290_2.00
Mus musculus
TRATTGCAATYA
TRATTGCAATYA
SELEX
Jolma et al.(2013)
Lhx8_3
0.603
0.333
LHX8
M05210_2.00
Homo sapiens
STAATTAN
NTAATTAS
SELEX
Yin et al.(2017)
LHX8_FL_HT-SELEX_1
0.603
0.333
LHX8
M05211_2.00
Homo sapiens
TRATTGCAATYA
TRATTGCAATYA
SELEX
Yin et al.(2017)
LHX8_FL_HT-SELEX_2
0.603
0.333
LHX8
M10713_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$LHX8_06
0.603
0.333
LHX8
M05212_2.00
Homo sapiens
STAATYAN
NTRATTAS
SELEX
Yin et al.(2017)
LHX8_FL_Methyl-HT-SELEX_1
0.603
0.333
LHX8
M05213_2.00
Homo sapiens
NTAACGAB
VTCGTTAN
SELEX
Yin et al.(2017)
LHX8_FL_Methyl-HT-SELEX_2
0.603
0.333
LHX8
M05214_2.00
Homo sapiens
TRATTGCAATYA
TRATTGCAATYA
SELEX
Yin et al.(2017)
LHX8_FL_Methyl-HT-SELEX_3
0.603
0.333
LHX6
M02086_2.00
Homo sapiens
NTRATTRN
NYAATYAN
PBM
Weirauch et al.(2014)
pTH6556
0.603
0.316
Lhx6
M00434_2.00
Mus musculus
NTRATTRN
NYAATYAN
PBM
Berger et al.(2008)
Lhx6_2272
0.603
0.316
Lhx6_CONSTRUCT
M00539_2.00
PBM CONSTRUCTS
NNTRATTRN
NYAATYANN
PBM
Berger et al.(2008)
Lhx6_3432
0.603
0.316
LHX6
M03108_2.00
Homo sapiens
VYTAATTAVB
VBTAATTARB
SELEX
Jolma et al.(2013)
LHX6_1
0.603
0.316
LHX6
M03109_2.00
Homo sapiens
YAATYARYRCTAATTA
TAATTAGYRYTRATTR
SELEX
Jolma et al.(2013)
LHX6_2
0.603
0.316
LHX6
M03110_2.00
Homo sapiens
TRATTGCAATYA
TRATTGCAATYA
SELEX
Jolma et al.(2013)
LHX6_3
0.603
0.316
LHX6
M04992_2.00
Homo sapiens
CTAATTRV
BYAATTAG
SELEX
Yin et al.(2017)
LHX6_FL_HT-SELEX_1
0.603
0.316
LHX6
M04993_2.00
Homo sapiens
TRATTGCAATYA
TRATTGCAATYA
SELEX
Yin et al.(2017)
LHX6_FL_HT-SELEX_2
0.603
0.316
LHX6
M05870_2.00
Homo sapiens
NYTRATTR
YAATYARN
SMiLE-seq
Isakova et al.(2017)
LHX6
0.603
0.316
Lhx6
M09187_2.00
Mus musculus
NYTGATTRV
BYAATCARN
Misc
Kulakovskiy et al.(2013)
LHX6_MOUSE.H11MO.0.C
0.603
0.316
LHX6
M04994_2.00
Homo sapiens
STAATTAV
BTAATTAS
SELEX
Yin et al.(2017)
LHX6_FL_Methyl-HT-SELEX_1
0.603
0.316
LHX6
M04995_2.00
Homo sapiens
HTAACGAG
CTCGTTAD
SELEX
Yin et al.(2017)
LHX6_FL_Methyl-HT-SELEX_2
0.603
0.316
LHX6
M04996_2.00
Homo sapiens
TRATTGCAATYA
TRATTGCAATYA
SELEX
Yin et al.(2017)
LHX6_FL_Methyl-HT-SELEX_3
0.603
0.316
HOXA2
M02083_2.00
Homo sapiens
NNNDHHNNN
NNNDDHNNN
PBM
Weirauch et al.(2014)
pTH5887
0.601
0.474
Hoxa2
M00403_2.00
Mus musculus
NTAATKRNN
NNYMATTAN
PBM
Berger et al.(2008)
Hoxa2_3079
0.601
0.474
HOXA2
M03097_2.00
Homo sapiens
NBTAATKRNN
NNYMATTAVN
SELEX
Jolma et al.(2013)
HOXA2_1
0.601
0.474
HOXB2
M03213_2.00
Homo sapiens
NNTAATKRNN
NNYMATTANN
SELEX
Jolma et al.(2013)
HOXB2_1
0.601
0.474
Hoxa2
M03251_2.00
Mus musculus
NNTAATKRNN
NNYMATTANN
SELEX
Jolma et al.(2013)
Hoxa2_1
0.601
0.474
HOXA2
M04962_2.00
Homo sapiens
NTAATKRV
BYMATTAN
SELEX
Yin et al.(2017)
HOXA2_eDBD_HT-SELEX
0.601
0.474
HOXA2
M04965_2.00
Homo sapiens
NTAATKAB
VTMATTAN
SELEX
Yin et al.(2017)
HOXA2_FL_HT-SELEX
0.601
0.474
HOXB2
M05292_2.00
Homo sapiens
BTAATKRV
BYMATTAV
SELEX
Yin et al.(2017)
HOXB2_eDBD_HT-SELEX
0.601
0.474
Hoxa2
M09566_2.00
Mus musculus
DTGATKGATKDB
VHMATCMATCAH
Misc
Heinz et al.(2010)
mES-Hoxa2_Donaldson_et_al.
0.601
0.474
HOXA2
M04963_2.00
Homo sapiens
NTAATTAN
NTAATTAN
SELEX
Yin et al.(2017)
HOXA2_eDBD_Methyl-HT-SELEX_1
0.601
0.474
HOXA2
M04964_2.00
Homo sapiens
HTAAYGAB
VTCRTTAD
SELEX
Yin et al.(2017)
HOXA2_eDBD_Methyl-HT-SELEX_2
0.601
0.474
HOXA2
M04966_2.00
Homo sapiens
NTAATKAB
VTMATTAN
SELEX
Yin et al.(2017)
HOXA2_FL_Methyl-HT-SELEX_1
0.601
0.474
HOXA2
M04967_2.00
Homo sapiens
HTAAYGAB
VTCRTTAD
SELEX
Yin et al.(2017)
HOXA2_FL_Methyl-HT-SELEX_2
0.601
0.474
HOXB2
M05293_2.00
Homo sapiens
NTAATKRN
NYMATTAN
SELEX
Yin et al.(2017)
HOXB2_eDBD_Methyl-HT-SELEX_1
0.601
0.474
HOXB2
M05294_2.00
Homo sapiens
HTAAYGAB
VTCRTTAD
SELEX
Yin et al.(2017)
HOXB2_eDBD_Methyl-HT-SELEX_2
0.601
0.474
pb
M03872_2.00
Drosophila melanogaster
NTRAYKRY
RYMRTYAN
SELEX
Nitta et al.(2015)
pb_1
0.601
0.456
pb
M06545_2.00
Drosophila melanogaster
YTAATKA
TMATTAR
B1H
Mathelier et al.(2014)
MA0238.1
0.601
0.456
pb
M06366_2.00
Drosophila melanogaster
BYTAATKA
TMATTARV
B1H
Zhu et al.(2011)
Pb_Cell_FBgn0051481
0.601
0.456
pb
M06367_2.00
Drosophila melanogaster
YTAATKA
TMATTAR
B1H
Zhu et al.(2011)
Pb_SOLEXA_FBgn0051481
0.601
0.456
Hoxd3
M00531_2.00
Mus musculus
NTAATNDN
NHNATTAN
PBM
Berger et al.(2008)
Hoxd3_1742
0.601
0.456
Hoxd3
M03287_2.00
Mus musculus
NNTAATKRNN
NNYMATTANN
SELEX
Jolma et al.(2013)
Hoxd3_1
0.601
0.456
HOXD3
M05101_2.00
Homo sapiens
CTAATTAS
STAATTAG
SELEX
Yin et al.(2017)
HOXD3_FL_HT-SELEX
0.601
0.456
HOXD3
M05102_2.00
Homo sapiens
YTAAYGAY
RTCRTTAR
SELEX
Yin et al.(2017)
HOXD3_FL_Methyl-HT-SELEX_1
0.601
0.456
HOXD3
M05103_2.00
Homo sapiens
CTAATKAC
GTMATTAG
SELEX
Yin et al.(2017)
HOXD3_FL_Methyl-HT-SELEX_2
0.601
0.456
For this family, TFs with SR scores >
0.599
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
GPLIN_000062700
Homeodomain
49
105
KRVRTVYSGWQLAALEAQFRVQQYLVGEQRVRFAEQLELNQTQVKVWFQNRRIRFRR
Links
Other
Homeodomain
family TFs
Other
Globodera pallida
TFs
1230 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy