GPLIN_001127900 (Globodera pallida)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 GPLIN_001127900 T234061_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
VSX1
M03087_2.00
Homo sapiens
YTAATTAN

NTAATTAR
SELEX
Jolma et al.(2013)
VSX1_1
0.703 0.500
VSX1
M03088_2.00
Homo sapiens
NNYAATTRRBN

NVYYAATTRNN
SELEX
Jolma et al.(2013)
VSX1_2
0.703 0.500
VSX1
M04941_2.00
Homo sapiens
YYAATTRN

NYAATTRR
SELEX
Yin et al.(2017)
VSX1_eDBD_HT-SELEX
0.703 0.500
VSX1
M04944_2.00
Homo sapiens
NTAATTRS

SYAATTAN
SELEX
Yin et al.(2017)
VSX1_FL_HT-SELEX
0.703 0.500
VSX1
M05869_2.00
Homo sapiens
DGCTAATTAN

NTAATTAGCH
SMiLE-seq
Isakova et al.(2017)
VSX1
0.703 0.500
VSX1
M04942_2.00
Homo sapiens
NTAAYGMN

NKCRTTAN
SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_1
0.703 0.500
VSX1
M04943_2.00
Homo sapiens
YYAATTRN

NYAATTRR
SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_2
0.703 0.500
VSX1
M04945_2.00
Homo sapiens
NTAATTRG

CYAATTAN
SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_1
0.703 0.500
VSX1
M04946_2.00
Homo sapiens
NTAAYGAN

NTCRTTAN
SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_2
0.703 0.500
VAX1
M03168_2.00
Homo sapiens
YTAATKAN

NTMATTAR
SELEX
Jolma et al.(2013)
VAX1_1
0.681 0.344
VAX1
M05182_2.00
Homo sapiens
BTAATTRN

NYAATTAV
SELEX
Yin et al.(2017)
VAX1_eDBD_HT-SELEX
0.681 0.344
VAX1
M05183_2.00
Homo sapiens
BTMATKRN

NYMATKAV
SELEX
Yin et al.(2017)
VAX1_eDBD_Methyl-HT-SELEX
0.681 0.344
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
GPLIN_001127900 Homeodomain 65 96

Links

Other Homeodomain family TFs
Other Globodera pallida TFs

1216 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AAEL010472 Aedes aegypti AAEL010472 I 0.000
AALB003178 Anopheles albimanus AALB003178 I 0.000
Aan_R000747 Calypte anna Aan_R000747 I 0.000
AARA011500 Anopheles arabiensis AARA011500 I 0.000
ACEP26870 Atta cephalotes ACEP26870 I 0.000
ACHR000367 Anopheles christyi ACHR000367 I 0.000
ACOM033000 Anopheles coluzzii ACOM033000 I 0.000
ACUA016345 Anopheles culicifacies ACUA016345 I 0.000
ADIR002616 Anopheles dirus ADIR002616 I 0.000
AEPI003935 Anopheles epiroticus AEPI003935 I 0.000
AFAF009626 Anopheles farauti AFAF009626 I 0.000
AFUN001469 Anopheles funestus AFUN001469 I 0.000
Alligator_sinensis_CCG015253.1 Alligator sinensis Alligator_sinensis_CCG015253.1 I 0.000
Alligator_sinensis_CCG019028.1 Alligator sinensis Alligator_sinensis_CCG019028.1 I 0.000
AMAM004582 Anopheles maculatus AMAM004582 I 0.000
AMEC016032 Anopheles melas AMEC016032 I 0.000
AMEM008015 Anopheles merus AMEM008015 I 0.000
AMIN002999 Anopheles minimus AMIN002999 I 0.000
AQUA006236 Anopheles quadriannulatus AQUA006236 I 0.000
ASTEI11387 Anopheles stephensi ASTEI11387 I 0.000
BGIBMGA013959 Bombyx mori BGIBMGA013959 I 0.000
BGLB003718 Biomphalaria glabrata BGLB003718 I 0.000
Brh_R004046 Buceros rhinoceros Brh_R004046 I 0.000
Brh_R008908 Buceros rhinoceros Brh_R008908 I 0.000
CABZ01066696.1 Danio rerio ENSDARG00000091603 I 0.000
CapteG49381 Capitella teleta CapteG49381 I 0.000
Cflo_01951--XP_001121011.1_APIME Camponotus floridanus Cflo_01951--XP_001121011.1_APIME I 0.000
Cmyd_10006869 Chelonia mydas Cmyd_10006869 I 0.000
Cmyd_10010656 Chelonia mydas Cmyd_10010656 I 0.000
CPIJ014602 Culex quinquefasciatus CPIJ014602 I 0.000
CpipJ_CPIJ014602 Culex pipiens CpipJ_CPIJ014602 I 0.000
ENSACAG00000005980 Anolis carolinensis ENSACAG00000005980 I 0.000
ENSACAG00000017046 Anolis carolinensis ENSACAG00000017046 I 0.000
ENSAMEG00000000014 Ailuropoda melanoleuca ENSAMEG00000000014 I 0.000
ENSAMEG00000012594 Ailuropoda melanoleuca ENSAMEG00000012594 I 0.000
ENSAMEG00000019057 Ailuropoda melanoleuca ENSAMEG00000019057 I 0.000
ENSAMXG00000011388 Astyanax mexicanus ENSAMXG00000011388 I 0.000
ENSAMXG00000017924 Astyanax mexicanus ENSAMXG00000017924 I 0.000
ENSAMXG00000025213 Astyanax mexicanus ENSAMXG00000025213 I 0.000
ENSAPLG00000000896 Anas platyrhynchos ENSAPLG00000000896 I 0.000
ENSBTAP00000025739-D1 Bos grunniens ENSBTAP00000025739-D1 I 0.000
ENSCPOG00000003558 Cavia porcellus ENSCPOG00000003558 I 0.000
ENSCPOG00000008197 Cavia porcellus ENSCPOG00000008197 I 0.000
ENSCPOG00000024157 Cavia porcellus ENSCPOG00000024157 I 0.000
ENSCSAG00000000466 Chlorocebus sabaeus ENSCSAG00000000466 I 0.000
ENSCSAG00000001247 Chlorocebus sabaeus ENSCSAG00000001247 I 0.000
ENSCSAG00000006504 Chlorocebus sabaeus ENSCSAG00000006504 I 0.000
ENSDNOG00000043562 Dasypus novemcinctus ENSDNOG00000043562 I 0.000
ENSDORG00000004570 Dipodomys ordii ENSDORG00000004570 I 0.000
ENSECAG00000018746 Equus caballus ENSECAG00000018746 I 0.000
ENSETEG00000008816 Echinops telfairi ENSETEG00000008816 I 0.000
ENSFALG00000009303 Ficedula albicollis ENSFALG00000009303 I 0.000
ENSFALG00000015243 Ficedula albicollis ENSFALG00000015243 I 0.000
ENSFCAG00000031106 Felis catus ENSFCAG00000031106 I 0.000
ENSGMOG00000005856 Gadus morhua ENSGMOG00000005856 I 0.000
ENSGMOG00000012044 Gadus morhua ENSGMOG00000012044 I 0.000
ENSGMOG00000019785 Gadus morhua ENSGMOG00000019785 I 0.000
ENSLACG00000011366 Latimeria chalumnae ENSLACG00000011366 I 0.000
ENSLACG00000017036 Latimeria chalumnae ENSLACG00000017036 I 0.000
ENSLOCG00000007669 Lepisosteus oculatus ENSLOCG00000007669 I 0.000
ENSLOCG00000009966 Lepisosteus oculatus ENSLOCG00000009966 I 0.000
ENSLOCG00000017967 Lepisosteus oculatus ENSLOCG00000017967 I 0.000
ENSMEUG00000008559 Macropus eugenii ENSMEUG00000008559 I 0.000
ENSMEUG00000011615 Macropus eugenii ENSMEUG00000011615 I 0.000
ENSMGAG00000010823 Meleagris gallopavo ENSMGAG00000010823 I 0.000
ENSMICG00000001720 Microcebus murinus ENSMICG00000001720 I 0.000
ENSMLUG00000006388 Myotis lucifugus ENSMLUG00000006388 I 0.000
ENSMMUG00000017870 Macaca mulatta ENSMMUG00000017870 I 0.000
ENSMPUG00000004316 Mustela putorius furo ENSMPUG00000004316 I 0.000
ENSMPUG00000012410 Mustela putorius furo ENSMPUG00000012410 I 0.000
ENSNLEG00000013010 Nomascus leucogenys ENSNLEG00000013010 I 0.000
ENSNLEG00000016398 Nomascus leucogenys ENSNLEG00000016398 I 0.000
ENSNLEG00000018969 Nomascus leucogenys ENSNLEG00000018969 I 0.000
ENSOANG00000032005 Ornithorhynchus anatinus ENSOANG00000032005 I 0.000
ENSOARG00000003039 Ovis aries ENSOARG00000003039 I 0.000
ENSOARG00000003450 Ovis aries ENSOARG00000003450 I 0.000
ENSOARG00000009454 Ovis aries ENSOARG00000009454 I 0.000
ENSOGAG00000016551 Otolemur garnettii ENSOGAG00000016551 I 0.000
ENSONIG00000009960 Oreochromis niloticus ENSONIG00000009960 I 0.000
ENSONIG00000021296 Oreochromis niloticus ENSONIG00000021296 I 0.000
ENSORLG00000013953 Oryzias latipes ENSORLG00000013953 I 0.000
ENSP00000334547 Macaca fascicularis ENSP00000334547 I 0.000
ENSP00000334547-D1 Bos grunniens ENSP00000334547-D1 I 0.000
ENSP00000360950 Macaca fascicularis ENSP00000360950 I 0.000
ENSP00000360950-D1 Bos grunniens ENSP00000360950-D1 I 0.000
ENSPANG00000009893 Papio anubis ENSPANG00000009893 I 0.000
ENSPANG00000014670 Papio anubis ENSPANG00000014670 I 0.000
ENSPANG00000017357 Papio anubis ENSPANG00000017357 I 0.000
ENSPFOG00000005195 Poecilia formosa ENSPFOG00000005195 I 0.000
ENSPFOG00000013394 Poecilia formosa ENSPFOG00000013394 I 0.000
ENSPFOG00000020678 Poecilia formosa ENSPFOG00000020678 I 0.000
ENSPMAG00000002259 Petromyzon marinus ENSPMAG00000002259 I 0.000
ENSPPYG00000009621 Pongo abelii ENSPPYG00000009621 I 0.000
ENSPSIG00000000318 Pelodiscus sinensis ENSPSIG00000000318 I 0.000
ENSPSIG00000010614 Pelodiscus sinensis ENSPSIG00000010614 I 0.000
ENSPVAG00000005351 Pteropus vampyrus ENSPVAG00000005351 I 0.000
ENSSHAG00000010681 Sarcophilus harrisii ENSSHAG00000010681 I 0.000
ENSSHAG00000014421 Sarcophilus harrisii ENSSHAG00000014421 I 0.000
ENSSHAG00000015614 Sarcophilus harrisii ENSSHAG00000015614 I 0.000
ENSSSCG00000013743 Sus scrofa ENSSSCG00000013743 I 0.000
ENSSSCG00000026460 Sus scrofa ENSSSCG00000026460 I 0.000
ENSSTOG00000008396 Ictidomys tridecemlineatus ENSSTOG00000008396 I 0.000
ENSSTOG00000026950 Ictidomys tridecemlineatus ENSSTOG00000026950 I 0.000
ENSSTOG00000028401 Ictidomys tridecemlineatus ENSSTOG00000028401 I 0.000
ENSTGUG00000006333 Taeniopygia guttata ENSTGUG00000006333 I 0.000
ENSTGUG00000018537 Taeniopygia guttata ENSTGUG00000018537 I 0.000
ENSTRUG00000004487 Takifugu rubripes ENSTRUG00000004487 I 0.000
ENSTSYG00000009754 Tarsius syrichta ENSTSYG00000009754 I 0.000
ENSXMAG00000007215 Xiphophorus maculatus ENSXMAG00000007215 I 0.000
ENSXMAG00000015686 Xiphophorus maculatus ENSXMAG00000015686 I 0.000
ENSXMAG00000020363 Xiphophorus maculatus ENSXMAG00000020363 I 0.000
GA15411 Drosophila pseudoobscura FBgn0075429 I 0.000
GB40906 Apis mellifera GB40906 I 0.000
GD24607 Drosophila simulans FBgn0195935 I 0.000
GE16932 Drosophila yakuba FBgn0234420 I 0.000
GF21374 Drosophila ananassae FBgn0098376 I 0.000
Gfo_R006237 Geospiza fortis Gfo_R006237 I 0.000
Gfo_R009231 Geospiza fortis Gfo_R009231 I 0.000
GG18617 Drosophila erecta FBgn0110828 I 0.000
GH24106 Drosophila grimshawi FBgn0131562 I 0.000
GI14376 Drosophila mojavensis FBgn0137128 I 0.000
GJ19415 Drosophila virilis FBgn0206558 I 0.000
GK10268 Drosophila willistoni FBgn0212283 I 0.000
GL26737 Drosophila persimilis FBgn0164318 I 0.000
gw.349.31.1 Branchiostoma floridae gw.349.31.1 I 0.000
HelroG81338 Helobdella robusta HelroG81338 I 0.000
HLH3B Drosophila melanogaster FBgn0011276 I 0.000
Hsal_07700--XP_001121011.1_APIME Harpegnathos saltator Hsal_07700--XP_001121011.1_APIME I 0.000
ISCW010324 Ixodes scapularis ISCW010324 I 0.000
KGM_01922 Danaus plexippus KGM_01922 I 0.000
L798_06639 Zootermopsis nevadensis L798_06639 I 0.000
LDEC012804 Leptinotarsa decemlineata LDEC012804 I 0.000
LLOJ006043 Lutzomyia longipalpis LLOJ006043 I 0.000
LYL1 Ochotona princeps ENSOPRG00000009458 I 0.000
LYL1 Tursiops truncatus ENSTTRG00000006376 I 0.000
LYL1 Otolemur garnettii ENSOGAG00000033339 I 0.000
LYL1 Loxodonta africana ENSLAFG00000005235 I 0.000
LYL1 Homo sapiens ENSG00000104903 D 0.000
LYL1 Monodelphis domestica ENSMODG00000011593 I 0.000
LYL1 Ornithorhynchus anatinus ENSOANG00000006846 I 0.000
LYL1 Gorilla gorilla ENSGGOG00000023512 I 0.000
lyl1 Xenopus tropicalis XB-GENE-940268 I 0.000
LYL1 Bos taurus ENSBTAG00000019329 I 0.000
Lyl1 Rattus norvegicus ENSRNOG00000002950 I 0.000
LYL1 Pteropus vampyrus ENSPVAG00000015075 I 0.000
LYL1 Procavia capensis ENSPCAG00000003676 I 0.000
LYL1 Myotis lucifugus ENSMLUG00000012805 I 0.000
Lyl1 Mus musculus ENSMUSG00000034041 D 0.000
LYL1 Macaca mulatta ENSMMUG00000001166 I 0.000
MCINX015509 Melitaea cinxia MCINX015509 I 0.000
Myotis_brandtii_LYL1_10009227 Myotis brandtii Myotis_brandtii_LYL1_10009227 I 0.000
Myotis_brandtii_TAL1_10003055 Myotis brandtii Myotis_brandtii_TAL1_10003055 I 0.000
NV24799 Nasonia vitripennis NV24799 I 0.000
Ogr06402 Ophisaurus gracilis Ogr06402 I 0.000
Ogr13537 Ophisaurus gracilis Ogr13537 I 0.000
Ogr15798 Ophisaurus gracilis Ogr15798 I 0.000
Pvit_02813 Pogona vitticeps Pvit_02813 I 0.000
Pvit_09175 Pogona vitticeps Pvit_09175 I 0.000
Pvit_14582 Pogona vitticeps Pvit_14582 I 0.000
Sakowv30007933m.g Saccoglossus kowalevskii Sakowv30007933m.g I 0.000
SINV21956 Solenopsis invicta SINV21956 I 0.000
SMAR000405 Strigamia maritima SMAR000405 I 0.000
TAL1 Loxodonta africana ENSLAFG00000013880 I 0.000
TAL1 Callithrix jacchus ENSCJAG00000021222 I 0.000
TAL1 Gorilla gorilla ENSGGOG00000011776 I 0.000
TAL1 Gallus gallus ENSGALG00000023296 I 0.000
tal1 Danio rerio ENSDARG00000019930 I 0.000
TAL1 Dasypus novemcinctus ENSDNOG00000047501 I 0.000
tal1 Xenopus tropicalis XB-GENE-479827 I 0.000
TAL1 Bos taurus ENSBTAG00000005029 I 0.000
Tal1 Mus musculus ENSMUSG00000028717 D 0.000
TAL1 Homo sapiens ENSG00000162367 D 0.000
tal1 Gasterosteus aculeatus ENSGACG00000013846 I 0.000
tal1 Gasterosteus aculeatus ENSGACG00000019476 I 0.000
TAL1 Canis familiaris ENSCAFG00000004032 I 0.000
TAL1 Ochotona princeps ENSOPRG00000004033 I 0.000
tal1 Oryzias latipes ENSORLG00000003776 I 0.000
TAL1 Taeniopygia guttata ENSTGUG00000008542 I 0.000
TAL1 Oryctolagus cuniculus ENSOCUG00000017248 I 0.000
tal1 Oryzias latipes ENSORLG00000016044 I 0.000
TAL1 Vicugna pacos ENSVPAG00000004268 I 0.000
TAL1 Tursiops truncatus ENSTTRG00000011653 I 0.000
TAL1 Procavia capensis ENSPCAG00000006179 I 0.000
tal1 Tetraodon nigroviridis ENSTNIG00000001525 I 0.000
TAL1 Monodelphis domestica ENSMODG00000001502 I 0.000
Tal1 Rattus norvegicus ENSRNOG00000025051 I 0.000
tal1 Takifugu rubripes ENSTRUG00000008218 I 0.000
tal1 Tetraodon nigroviridis ENSTNIG00000006133 I 0.000
TAL1 Pan troglodytes ENSPTRG00000000710 I 0.000
tal1.S Xenopus laevis XB-GENE-865312 I 0.000
Tal2 Rattus norvegicus ENSRNOG00000028082 I 0.000
TAL2 Anolis carolinensis ENSACAG00000004545 I 0.000
TAL2 Bos taurus ENSBTAG00000045852 I 0.000
TAL2 Pteropus vampyrus ENSPVAG00000005744 I 0.000
tal2 Xenopus tropicalis XB-GENE-965184 I 0.000
TAL2 Echinops telfairi ENSETEG00000007386 I 0.000
TAL2 Erinaceus europaeus ENSEEUG00000003187 I 0.000
TAL2 Equus caballus ENSECAG00000004995 I 0.000
TAL2 Canis familiaris ENSCAFG00000032112 I 0.000
TAL2 Pan troglodytes ENSPTRG00000021225 I 0.000
TAL2 Callithrix jacchus ENSCJAG00000022534 I 0.000
tal2 Danio rerio ENSDARG00000042041 I 0.000
Tal2 Dipodomys ordii ENSDORG00000012882 I 0.000
TAL2 Dasypus novemcinctus ENSDNOG00000006670 I 0.000
TAL2 Felis catus ENSFCAG00000008052 I 0.000
TAL2 Myotis lucifugus ENSMLUG00000008792 I 0.000
TAL2 Macaca mulatta ENSMMUG00000002671 I 0.000
TAL2 Loxodonta africana ENSLAFG00000008309 I 0.000
TAL2 Monodelphis domestica ENSMODG00000022957 I 0.000
Tal2 Mus musculus ENSMUSG00000028417 I 0.000
TAL2 Gorilla gorilla ENSGGOG00000006780 I 0.000
TAL2 Ornithorhynchus anatinus ENSOANG00000004194 I 0.000
TAL2 Gallus gallus ENSGALG00000023114 I 0.000
tal2 Gasterosteus aculeatus ENSGACG00000013904 I 0.000
TAL2 Homo sapiens ENSG00000186051 I 0.000
TAL2 Ochotona princeps ENSOPRG00000013838 I 0.000
tal2 Oryzias latipes ENSORLG00000000466 I 0.000
TAL2 Tursiops truncatus ENSTTRG00000003494 I 0.000
TAL2 Procavia capensis ENSPCAG00000004449 I 0.000
tal2 Takifugu rubripes ENSTRUG00000016731 I 0.000
TAL2 Otolemur garnettii ENSOGAG00000009225 I 0.000
Tal_R009538 Tyto alba Tal_R009538 I 0.000
TC009117 Tribolium castaneum TC009117 I 0.000