CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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GPUH_0000951201
(
Gongylonema pulchrum
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00046 (Homeobox)
IPR001356
GPUH_0000951201
T234103_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
acj6
M02241_2.00
Drosophila melanogaster
VTMATTAA
TTAATKAB
PBM
Weirauch et al.(2014)
pTH6053
0.648
0.456
POU6F1
M02094_2.00
Homo sapiens
VNTAATTANB
VNTAATTANB
PBM
Weirauch et al.(2014)
pTH6519
0.603
0.474
For this family, TFs with SR scores >
0.599
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
GPUH_0000951201-mRNA-1
Homeodomain
49
105
RRKRTNLHMAQRTALDTYFDINPRPDHDRMAEIAEIVGLDRDVVRVWFCNRRQKLRK
Links
Other
Homeodomain
family TFs
Other
Gongylonema pulchrum
TFs
27 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
L596_g13343
Steinernema carpocapsae
L596_g13343
I
0.828
SBAD_0000673901
Soboliphyme baturini
SBAD_0000673901
I
0.726
ENSOANG00000013329
Ornithorhynchus anatinus
ENSOANG00000013329
I
0.699
MESCA009897
Megaselia scalaris
MESCA009897
I
0.690
ENSCING00000013609
Ciona intestinalis
ENSCING00000013609
I
0.677
ENSCSAVG00000007148
Ciona savignyi
ENSCSAVG00000007148
I
0.677
EFV49290
Trichinella spiralis
EFV49290
I
0.674
POU2F2
Homo sapiens
ENSG00000028277
D
0.671
ENSSHAG00000018562
Sarcophilus harrisii
ENSSHAG00000018562
I
0.671
BGIBMGA010300
Bombyx mori
BGIBMGA010300
I
0.671
AMAM009961
Anopheles maculatus
AMAM009961
I
0.666
HelroG138303
Helobdella robusta
HelroG138303
I
0.654
Ogr05710
Ophisaurus gracilis
Ogr05710
I
0.653
L898_g18190
Steinernema monticolum
L898_g18190
I
0.648
acj6
Drosophila melanogaster
FBgn0000028
D
0.648
Cmyd_10006628
Chelonia mydas
Cmyd_10006628
I
0.648
L798_02028
Zootermopsis nevadensis
L798_02028
I
0.648
Cflo_05860--XP_394134.2_APIME
Camponotus floridanus
Cflo_05860--XP_394134.2_APIME
I
0.648
BXY_0883500
Bursaphelenchus xylophilus
BXY_0883500
I
0.647
DAPPUDRAFT_9350
Daphnia pulex
DAPPUDRAFT_9350
I
0.645
ECPE_0001547101
Echinostoma caproni
ECPE_0001547101
N
0.642
POU5F1
Callithrix jacchus
ENSCJAG00000019789
I
0.620
AMAM021613
Anopheles maculatus
AMAM021613
I
0.616
PPAI004106
Phlebotomus papatasi
PPAI004106
I
0.616
SMTD_0002076601
Schistosoma mattheei
SMTD_0002076601
I
0.610
SROB_0001854701
Schistosoma rodhaini
SROB_0001854701
I
0.610
POU6F1
Homo sapiens
ENSG00000184271
D
0.603