GPUH_0000999401 (Gongylonema pulchrum)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 GPUH_0000999401 T234106_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
VSX1
M03087_2.00
Homo sapiens
YTAATTAN

NTAATTAR
SELEX
Jolma et al.(2013)
VSX1_1
0.802 0.622
VSX1
M03088_2.00
Homo sapiens
NNYAATTRRBN

NVYYAATTRNN
SELEX
Jolma et al.(2013)
VSX1_2
0.802 0.622
VSX1
M04941_2.00
Homo sapiens
YYAATTRN

NYAATTRR
SELEX
Yin et al.(2017)
VSX1_eDBD_HT-SELEX
0.802 0.622
VSX1
M04944_2.00
Homo sapiens
NTAATTRS

SYAATTAN
SELEX
Yin et al.(2017)
VSX1_FL_HT-SELEX
0.802 0.622
VSX1
M05869_2.00
Homo sapiens
DGCTAATTAN

NTAATTAGCH
SMiLE-seq
Isakova et al.(2017)
VSX1
0.802 0.622
VSX1
M04942_2.00
Homo sapiens
NTAAYGMN

NKCRTTAN
SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_1
0.802 0.622
VSX1
M04943_2.00
Homo sapiens
YYAATTRN

NYAATTRR
SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_2
0.802 0.622
VSX1
M04945_2.00
Homo sapiens
NTAATTRG

CYAATTAN
SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_1
0.802 0.622
VSX1
M04946_2.00
Homo sapiens
NTAAYGAN

NTCRTTAN
SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_2
0.802 0.622
VAX1
M03168_2.00
Homo sapiens
YTAATKAN

NTMATTAR
SELEX
Jolma et al.(2013)
VAX1_1
0.736 0.422
VAX1
M05182_2.00
Homo sapiens
BTAATTRN

NYAATTAV
SELEX
Yin et al.(2017)
VAX1_eDBD_HT-SELEX
0.736 0.422
VAX1
M05183_2.00
Homo sapiens
BTMATKRN

NYMATKAV
SELEX
Yin et al.(2017)
VAX1_eDBD_Methyl-HT-SELEX
0.736 0.422
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
GPUH_0000999401-mRNA-1 Homeodomain 33 77

Links

Other Homeodomain family TFs
Other Gongylonema pulchrum TFs

1248 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AMTR_s00009p00253500 Amborella trichopoda AMTR_s00009p00253500 N 0.000
Aquca_038_00045 Aquilegia coerulea Aquca_038_00045 N 0.000
scaffold_200168.1 Arabidopsis lyrata scaffold_200168.1 N 0.000
AT1G63490 Arabidopsis thaliana AT1G63490 N 0.000
Bostr.9600s0015 Boechera stricta Bostr.9600s0015 N 0.000
BRADI1G29247 Brachypodium distachyon BRADI1G29247 N 0.000
Bo9g029100 Brassica oleracea Bo9g029100 N 0.000
PK05702.1 Cannabis sativa PK05702.1 N 0.000
Cagra.2104s0024 Capsella grandiflora Cagra.2104s0024 N 0.000
Cla007529 Citrullus lanatus Cla007529 I 0.000
orange1.1g000212m.g Citrus sinensis orange1.1g000212m.g N 0.000
Eucgr.D01851 Eucalyptus grandis Eucgr.D01851 N 0.000
Thhalv10023217m.g Eutrema salsugineum Thhalv10023217m.g N 0.000
gene32474-v1.0-hybrid Fragaria vesca gene32474-v1.0-hybrid N 0.000
GLYMA11G02580 Glycine max GLYMA11G02580 N 0.000
GLYMA01G42890 Glycine max GLYMA01G42890 N 0.000
Gorai.004G211700 Gossypium raimondii Gorai.004G211700 N 0.000
LPERR06G23820 Leersia perrieri LPERR06G23820 N 0.000
Lus10008495.g Linum usitatissimum Lus10008495.g N 0.000
chr2.CM0304.950.nc Lotus japonicus chr2.CM0304.950.nc N 0.000
MDP0000158904 Malus domestica MDP0000158904 N 0.000
MDP0000162827 Malus domestica MDP0000162827 N 0.000
MDP0000286412 Malus domestica MDP0000286412 N 0.000
MDP0000287313 Malus domestica MDP0000287313 N 0.000
cassava14944.m1 Manihot esculenta cassava14944.m1 N 0.000
MTR_5g010300 Medicago truncatula MTR_5g010300 N 0.000
mgf018831m Mimulus guttatus mgf018831m N 0.000
OBART06G28370 Oryza barthii OBART06G28370 N 0.000
ORGLA06G0289500 Oryza glaberrima ORGLA06G0289500 N 0.000
OGLUM06G29760 Oryza glumaepatula OGLUM06G29760 N 0.000
BGIOSGA020494 Oryza indica BGIOSGA020494 N 0.000
OLONG_013925 Oryza longistaminata OLONG_013925 N 0.000
OMERI06G28260 Oryza meridionalis OMERI06G28260 N 0.000
ONIVA06G31490 Oryza nivara ONIVA06G31490 N 0.000
ORUFI06G30290 Oryza rufipogon ORUFI06G30290 N 0.000
OS06G0731600 Oryza sativa OS06G0731600 N 0.000
PDK_20s1401711g002 Phoenix dactylifera PDK_20s1401711g002 N 0.000
Pm023825 Prunus mume Pm023825 N 0.000
30190.m011218 Ricinus communis 30190.m011218 N 0.000
Si005667m.g Setaria italica Si005667m.g N 0.000
Solyc08g081000.2 Solanum lycopersicum Solyc08g081000.2 N 0.000
Sb10g031260 Sorghum bicolor Sb10g031260 N 0.000
TCM_016246 Theobroma cacao TCM_016246 N 0.000
GRMZM2G466292 Zea mays GRMZM2G466292 N 0.000