CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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HCOI00303400
(
Haemonchus contortus
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00046 (Homeobox)
IPR001356
HCOI00303400
T234172_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Hoxc12
M00508_2.00
Mus musculus
NDTWAYNDBN
NVHNRTWAHN
PBM
Berger et al.(2008)
Hoxc12_3480
0.606
0.368
HOXC12
M03135_2.00
Homo sapiens
TTTTATTRY
RYAATAAAA
SELEX
Jolma et al.(2013)
HOXC12_1
0.606
0.368
HOXC12
M03136_2.00
Homo sapiens
RRTCGTAAAAH
DTTTTACGAYY
SELEX
Jolma et al.(2013)
HOXC12_2
0.606
0.368
HOXC12
M05083_2.00
Homo sapiens
NGYAATAAAAN
NTTTTATTRCN
SELEX
Yin et al.(2017)
HOXC12_eDBD_HT-SELEX_1
0.606
0.368
HOXC12
M05084_2.00
Homo sapiens
VRTCGTAAAHN
NDTTTACGAYB
SELEX
Yin et al.(2017)
HOXC12_eDBD_HT-SELEX_2
0.606
0.368
HOXC12
M05085_2.00
Homo sapiens
NGYAATAAAAH
DTTTTATTRCN
SELEX
Yin et al.(2017)
HOXC12_eDBD_Methyl-HT-SELEX_1
0.606
0.368
HOXC12
M05086_2.00
Homo sapiens
NRTCGTAAAHH
DDTTTACGAYN
SELEX
Yin et al.(2017)
HOXC12_eDBD_Methyl-HT-SELEX_2
0.606
0.368
ceh-58
M00676_2.00
Caenorhabditis elegans
NNTAATTRNN
NNYAATTANN
PBM
Narasimhan et al.(2015)
pTH9923
0.599
0.579
For this family, TFs with SR scores >
0.599
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
HCOI00303400.t1
Homeodomain
224
282
RKGRKTYTERDLQILEEFYLRDPFACASPDKRQSLCHMLDIDPYRLKVWFQNRRRKDKL
Links
Other
Homeodomain
family TFs
Other
Haemonchus contortus
TFs
68 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy