HmN_000567900 (Hymenolepis microstoma)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 HmN_000567900 T234313_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
mirr
M06514_2.00
Drosophila melanogaster
WWACA

TGTWW
B1H
Mathelier et al.(2014)
MA0233.1
0.769 0.860
mirr
M06305_2.00
Drosophila melanogaster
NDNWWACA

TGTWWNHN
B1H
Zhu et al.(2011)
Mirr_Cell_FBgn0014343
0.769 0.860
mirr
M06306_2.00
Drosophila melanogaster
DDWACA

TGTWHH
B1H
Zhu et al.(2011)
Mirr_SOLEXA_FBgn0014343
0.769 0.860
SNAPOd2T00005194001
M02229_2.00
Oikopleura dioica
NNTACATGTDN

NHACATGTANN
PBM
Weirauch et al.(2014)
pTH5976
0.757 0.754
Irx3
M00453_2.00
Mus musculus
NNDACAHNNN

NNNDTGTHNN
PBM
Berger et al.(2008)
Irx3_0920
0.738 0.842
Irx3
M00454_2.00
Mus musculus
NNDACWHN

NDWGTHNN
PBM
Berger et al.(2008)
Irx3_2226
0.738 0.842
Irx3
M03266_2.00
Mus musculus
WWTKTCATGTWR

YWACATGAMAWW
SELEX
Jolma et al.(2013)
Irx3_1
0.738 0.842
IRX1
M05283_2.00
Homo sapiens
DDCRHNNNNNNNNDYGHH

DDCRHNNNNNNNNDYGHH
SELEX
Yin et al.(2017)
IRX1_eDBD_HT-SELEX
0.738 0.842
IRX3
M05319_2.00
Homo sapiens
DACAHGNWWWWNCDTGTH

DACAHGNWWWWNCDTGTH
SELEX
Yin et al.(2017)
IRX3_eDBD_HT-SELEX
0.738 0.842
IRX1
M05284_2.00
Homo sapiens
NNCRHNNNNNNNNDYVHN

NDBRHNNNNNNNNDYGNN
SELEX
Yin et al.(2017)
IRX1_eDBD_Methyl-HT-SELEX
0.738 0.842
IRX3
M05320_2.00
Homo sapiens
DACRYRHNWWNDYKCGTW

WACGMRHNWWNDYRYGTH
SELEX
Yin et al.(2017)
IRX3_eDBD_Methyl-HT-SELEX
0.738 0.842
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
HmN_000567900 Homeodomain 42 101

Links

Other Homeodomain family TFs
Other Hymenolepis microstoma TFs

282 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
CapteG115154 Capitella teleta CapteG115154 N 0.000
CGI_10022161 Crassostrea gigas CGI_10022161 N 0.000
HelroG126586 Helobdella robusta HelroG126586 N 0.000
LotgiG113393 Lottia gigantea LotgiG113393 N 0.000
Ocbimv22000807m.g Octopus bimaculoides Ocbimv22000807m.g N 0.000
SMU15030006 Schmidtea mediterranea SMU15030006 N 0.000
SMU15031043 Schmidtea mediterranea SMU15031043 N 0.000