CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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HNAJ_0001184001
(
Hymenolepis nana
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00046 (Homeobox)
IPR001356
HNAJ_0001184001
T234384_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Nkx3-1
M00170_2.00
Mus musculus
NDAAGTRBNN
NNVYACTTHN
PBM
Badis et al.(2009)
Nkx3-1_2923
0.600
0.561
Nkx3-1
M00420_2.00
Mus musculus
NNAAGTRBNN
NNVYACTTNN
PBM
Berger et al.(2008)
Nkx3-1_2923
0.600
0.561
NKX3-1
M05255_2.00
Homo sapiens
NNTAAGTGSN
NSCACTTANN
SELEX
Yin et al.(2017)
NKX3-1_eDBD_HT-SELEX
0.600
0.561
NKX3-1
M09154_2.00
Homo sapiens
NYDAAGTGBYWD
HWRVCACTTHRN
Misc
Kulakovskiy et al.(2013)
NKX31_HUMAN.H11MO.0.C
0.600
0.561
Nkx3-1
M09184_2.00
Mus musculus
NYDAAGTGBYWD
HWRVCACTTHRN
Misc
Kulakovskiy et al.(2013)
NKX31_MOUSE.H11MO.0.C
0.600
0.561
NKX3-1
M09559_2.00
Homo sapiens
BTRAGTRBYY
RRVYACTYAV
Misc
Heinz et al.(2010)
LNCaP-Nkx3.1_GSE28264
0.600
0.561
NKX3-1
M10729_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$GT1_Q6_01
0.600
0.561
NKX3-1
M10730_2.00
Homo sapiens
NWWTAAGTATWH
DWATACTTAWWN
Transfac
Matys et al.(2006)
V$NKX3A_01
0.600
0.561
NKX3-1
M10731_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$NKX3A_Q3
0.600
0.561
NKX3-1
M05256_2.00
Homo sapiens
NNTAAGTGBN
NVCACTTANN
SELEX
Yin et al.(2017)
NKX3-1_eDBD_Methyl-HT-SELEX_1
0.600
0.561
NKX3-1
M05257_2.00
Homo sapiens
NTAAYSWB
VWSRTTAN
SELEX
Yin et al.(2017)
NKX3-1_eDBD_Methyl-HT-SELEX_2
0.600
0.561
For this family, TFs with SR scores >
0.599
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
HNAJ_0001184001-mRNA-1
Homeodomain
188
244
KRARITFSPYQVKVLRAKYNHKKYLSNAERSELAGDLGLSDQQVKIWFQNQRYKEKK
Links
Other
Homeodomain
family TFs
Other
Hymenolepis nana
TFs
171 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy