CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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L596_g14232
(
Steinernema carpocapsae
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00046 (Homeobox)
IPR001356
L596_g14232
T234506_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Q86SD7_PODCA
M02213_2.00
Podocoryne carnea
NNTAATTADN
NHTAATTANN
PBM
Weirauch et al.(2014)
pTH6136
0.674
0.544
Nkx2-6
M00496_2.00
Mus musculus
HYAAGTRBNN
NNVYACTTRD
PBM
Berger et al.(2008)
Nkx2-6_3437
0.610
0.579
For this family, TFs with SR scores >
0.599
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
L596_g14232.t1
Homeodomain
36
92
RRQRSSFSAVQVHFLEIEFRNQRYISPESRARLASALGLTQQQIKIWFQNRRYKSKP
Links
Other
Homeodomain
family TFs
Other
Steinernema carpocapsae
TFs
37 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy