CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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maker-nMf.1.1.scaf00145-augustus-gene-0.13
(
Meloidogyne floridensis
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00046 (Homeobox)
IPR001356
maker-nMf.1.1.scaf00145-augustus-gene-0.13
T235017_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Uncx
M00443_2.00
Mus musculus
NTAATNDN
NHNATTAN
PBM
Berger et al.(2008)
Uncx4
0.613
0.784
uncx
M02111_2.00
Tetraodon nigroviridis
NNTAATTRN
NYAATTANN
PBM
Weirauch et al.(2014)
pTH5474
0.613
0.784
UNCX
M03191_2.00
Homo sapiens
NWAATTVVRTHWN
NWDAYBBAATTWN
SELEX
Jolma et al.(2013)
UNCX_1
0.613
0.784
UNCX
M03192_2.00
Homo sapiens
NTAATTRN
NYAATTAN
SELEX
Jolma et al.(2013)
UNCX_2
0.613
0.784
Uncx
M03264_2.00
Mus musculus
NTAATTVRATTAN
NTAATYBAATTAN
SELEX
Jolma et al.(2013)
Uncx_1
0.613
0.784
Uncx
M03265_2.00
Mus musculus
NTAATTRR
YYAATTAN
SELEX
Jolma et al.(2013)
Uncx_2
0.613
0.784
UNCX
M05240_2.00
Homo sapiens
NYAATTRV
BYAATTRN
SELEX
Yin et al.(2017)
UNCX_eDBD_HT-SELEX
0.613
0.784
UNCX
M05241_2.00
Homo sapiens
NYRRYKNN
NNMRYYRN
SELEX
Yin et al.(2017)
UNCX_eDBD_Methyl-HT-SELEX
0.613
0.784
For this family, TFs with SR scores >
0.599
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
maker-nMf.1.1.scaf00145-augustus-gene-0.13-mRNA-1
Homeodomain
231
281
RRTRTNFSNWQLNELENAFESGHYPDVFMREALALRLDLLESRVQVKNQNN
Links
Other
Homeodomain
family TFs
Other
Meloidogyne floridensis
TFs
207 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
NEMVEDRAFT_v1g93991
Nematostella vectensis
NEMVEDRAFT_v1g93991
I
0.745
ALX1
Gorilla gorilla
ENSGGOG00000000168
I
0.737
ENSMPUG00000006459
Mustela putorius furo
ENSMPUG00000006459
I
0.735
NEMVEDRAFT_v1g49015
Nematostella vectensis
NEMVEDRAFT_v1g49015
I
0.734
NEMVEDRAFT_v1g48953
Nematostella vectensis
NEMVEDRAFT_v1g48953
I
0.734
ACHR010176
Anopheles christyi
ACHR010176
N
0.712
BGLB003458
Biomphalaria glabrata
BGLB003458
I
0.712
Cmyd_10002827
Chelonia mydas
Cmyd_10002827
N
0.706
DILT_0000923301
Diphyllobothrium latum
DILT_0000923301
I
0.705
OTP
Pteropus vampyrus
ENSPVAG00000011630
I
0.702
ENSGMOG00000015411
Gadus morhua
ENSGMOG00000015411
I
0.697
Smp_189380
Schistosoma mansoni
Smp_189380
I
0.693
PXEA_0001895501
Protopolystoma xenopodis
PXEA_0001895501
I
0.693
ENSMGAG00000015339
Meleagris gallopavo
ENSMGAG00000015339
I
0.693
LCUP002254
Lucilia cuprina
LCUP002254
N
0.693
C_01031
Schistosoma haematobium
C_01031
I
0.693
SMTD_0002280601
Schistosoma mattheei
SMTD_0002280601
I
0.693
C_01032
Schistosoma haematobium
C_01032
I
0.693
SROB_0001108301
Schistosoma rodhaini
SROB_0001108301
I
0.693
WUBG_03794
Wuchereria bancrofti
WUBG_03794
N
0.690
e_gw.549.21.1
Branchiostoma floridae
e_gw.549.21.1
I
0.688
ENSGMOG00000011340
Gadus morhua
ENSGMOG00000011340
N
0.688
ISCW024267
Ixodes scapularis
ISCW024267
I
0.688
nRc.2.0.1.g34717
Romanomermis culicivorax
nRc.2.0.1.g34717
I
0.684
CLEC000966
Cimex lectularius
CLEC000966
N
0.679
AQUA001638
Anopheles quadriannulatus
AQUA001638
I
0.676
ACOM028612
Anopheles coluzzii
ACOM028612
I
0.676
AARA006634
Anopheles arabiensis
AARA006634
I
0.676
AGAP003574
Anopheles gambiae
AGAP003574
I
0.676
PEQ_0000006101
Parascaris equorum
PEQ_0000006101
N
0.675
NKX1-1
Pan troglodytes
ENSPTRG00000041220
I
0.674
AMEC003288
Anopheles melas
AMEC003288
N
0.666
MEOX1
Bos taurus
ENSBTAG00000015751
I
0.666
MCINX000309
Melitaea cinxia
MCINX000309
I
0.666
ENSPANG00000025837
Papio anubis
ENSPANG00000025837
I
0.662
SCUD_0001719701
Schistosoma curassoni
SCUD_0001719701
I
0.660
Smp_165410
Schistosoma mansoni
Smp_165410
I
0.660
ACOM034313
Anopheles coluzzii
ACOM034313
I
0.659
OFLC_0001568801
Onchocerca flexuosa
OFLC_0001568801
I
0.655
SCUD_0000812901
Schistosoma curassoni
SCUD_0000812901
I
0.653
L893_g26530
Steinernema glaseri
L893_g26530
I
0.653
PXEA_0002510601
Protopolystoma xenopodis
PXEA_0002510601
I
0.652
ANCDUO_14705
Ancylostoma duodenale
ANCDUO_14705
I
0.652
ANCCEY_05038
Ancylostoma ceylanicum
ANCCEY_05038
I
0.652
nLs.2.1.2.g00296
Litomosoides sigmodontis
nLs.2.1.2.g00296
I
0.652
NECAME_15973
Necator americanus
NECAME_15973
I
0.652
TRE_0000860801
Trichobilharzia regenti
TRE_0000860801
I
0.652
ENSPSIG00000005438
Pelodiscus sinensis
ENSPSIG00000005438
I
0.651
ENSTSYG00000012674
Tarsius syrichta
ENSTSYG00000012674
I
0.651
tetur14g02380
Tetranychus urticae
tetur14g02380
I
0.649
TELCIR_07155
Teladorsagia circumcincta
TELCIR_07155
I
0.649
DME_0001008101
Dracunculus medinensis
DME_0001008101
I
0.649
ENSPFOG00000017586
Poecilia formosa
ENSPFOG00000017586
I
0.648
PDX1
Dasypus novemcinctus
ENSDNOG00000003213
I
0.647
ENSOARG00000018096
Ovis aries
ENSOARG00000018096
I
0.647
ENSGGOG00000027271
Gorilla gorilla
ENSGGOG00000027271
I
0.647
augustus_masked-nMf.1.1.scaf12078-processed-gene-0.0
Meloidogyne floridensis
augustus_masked-nMf.1.1.scaf12078-processed-gene-0.0
I
0.646
BTMF_0000584401
Brugia timori
BTMF_0000584401
I
0.646
nAv.1.0.1.g03166
Acanthocheilonema viteae
nAv.1.0.1.g03166
I
0.646
PEQ_0001172001
Parascaris equorum
PEQ_0001172001
I
0.646
WUBG_01783
Wuchereria bancrofti
WUBG_01783
I
0.644
ALUE_0001238401
Ascaris lumbricoides
ALUE_0001238401
I
0.644
Hba_17613
Heterorhabditis bacteriophora
Hba_17613
I
0.644
ASIM_0001502101
Anisakis simplex
ASIM_0001502101
I
0.644
LOAG_02387
Loa loa
LOAG_02387
I
0.642
LOAG_17577
Loa loa
LOAG_17577
N
0.642
BARHL2
Vicugna pacos
ENSVPAG00000005913
I
0.642
BARHL2
Monodelphis domestica
ENSMODG00000012056
I
0.642
TASK_0000431401
Taenia asiatica
TASK_0000431401
I
0.642
Alligator_sinensis_CCG007467.1
Alligator sinensis
Alligator_sinensis_CCG007467.1
I
0.642
CGI_10009942
Crassostrea gigas
CGI_10009942
I
0.642
WBGene00242173
Onchocerca volvulus
WBGene00242173
I
0.642
CapteG30874
Capitella teleta
CapteG30874
I
0.642
PXEA_0001255201
Protopolystoma xenopodis
PXEA_0001255201
I
0.642
MhA1_Contig899.frz3.gene1
Meloidogyne hapla
MhA1_Contig899.frz3.gene1
I
0.642
Aan_R000875
Calypte anna
Aan_R000875
I
0.642
Sakowv30043910m.g
Saccoglossus kowalevskii
Sakowv30043910m.g
I
0.642
ENSMGAG00000006701
Meleagris gallopavo
ENSMGAG00000006701
I
0.642
SINV18014
Solenopsis invicta
SINV18014
I
0.641
MESCA011262
Megaselia scalaris
MESCA011262
I
0.641
MESCA003890
Megaselia scalaris
MESCA003890
I
0.641
CLEC007879
Cimex lectularius
CLEC007879
I
0.641
Afo_R001648
Aptenodytes forsteri
Afo_R001648
I
0.641
ENSORLG00000012370
Oryzias latipes
ENSORLG00000012370
I
0.641
DAPPUDRAFT_55144
Daphnia pulex
DAPPUDRAFT_55144
I
0.641
LotgiG120200
Lottia gigantea
LotgiG120200
I
0.641
BARHL1
Felis catus
ENSFCAG00000007105
I
0.641
TsM_000296500
Taenia solium
TsM_000296500
I
0.641
ACUA028387
Anopheles culicifacies
ACUA028387
I
0.641
ASIS004766
Anopheles sinensis
ASIS004766
I
0.641
LLOJ004353
Lutzomyia longipalpis
LLOJ004353
I
0.641
ENSPFOG00000024523
Poecilia formosa
ENSPFOG00000024523
I
0.640
Smp_125600
Schistosoma mansoni
Smp_125600
I
0.640
OFLC_0000069201
Onchocerca flexuosa
OFLC_0000069201
I
0.638
TCNE_0001765901
Toxocara canis
TCNE_0001765901
I
0.638
nOo.2.0.1.g00955
Onchocerca ochengi
nOo.2.0.1.g00955
I
0.638
TCLT_0000599001
Thelazia callipaeda
TCLT_0000599001
I
0.638
EEL_0000392901
Elaeophora elaphi
EEL_0000392901
I
0.638
ASIM_0000400001
Anisakis simplex
ASIM_0000400001
I
0.638
ACAC_0000394201
Angiostrongylus cantonensis
ACAC_0000394201
I
0.638
ASIM_0001653501
Anisakis simplex
ASIM_0001653501
I
0.638
CGOC_0000550601
Cylicostephanus goldi
CGOC_0000550601
I
0.638
EVEC_0000662001
Enterobius vermicularis
EVEC_0000662001
I
0.638
GPUH_0002067401
Gongylonema pulchrum
GPUH_0002067401
I
0.638
WBGene00245266
Onchocerca volvulus
WBGene00245266
I
0.638
WUBG_02861
Wuchereria bancrofti
WUBG_02861
I
0.638
ENSGACG00000020715
Gasterosteus aculeatus
ENSGACG00000020715
I
0.631
nOo.2.0.1.g01207
Onchocerca ochengi
nOo.2.0.1.g01207
I
0.631
ANCDUO_02875
Ancylostoma duodenale
ANCDUO_02875
I
0.631
GPUH_0000001901
Gongylonema pulchrum
GPUH_0000001901
I
0.631
DME_0000365001
Dracunculus medinensis
DME_0000365001
I
0.631
PEQ_0000367601
Parascaris equorum
PEQ_0000367601
I
0.631
ENSGMOG00000006424
Gadus morhua
ENSGMOG00000006424
I
0.631
NBR_0000568501
Nippostrongylus brasiliensis
NBR_0000568501
I
0.631
TriadG9178
Trichoplax adhaerens
TriadG9178
N
0.631
TCLT_0000305201
Thelazia callipaeda
TCLT_0000305201
I
0.631
ALUE_0001765001
Ascaris lumbricoides
ALUE_0001765001
I
0.630
L893_g30689
Steinernema glaseri
L893_g30689
I
0.618
L596_g27362
Steinernema carpocapsae
L596_g27362
I
0.618
L892_g11829
Steinernema scapterisci
L892_g11829
I
0.618
L889_g5677
Steinernema feltiae
L889_g5677
I
0.618
nRc.2.0.1.g31059
Romanomermis culicivorax
nRc.2.0.1.g31059
I
0.618
L898_g3968
Steinernema monticolum
L898_g3968
I
0.618
ASIS018158
Anopheles sinensis
ASIS018158
N
0.617
DICVIV_04289
Dictyocaulus viviparus
DICVIV_04289
I
0.614
BXY_0660800
Bursaphelenchus xylophilus
BXY_0660800
I
0.614
D917_04035
Trichinella nativa
D917_04035
I
0.614
D918_07885
Trichuris suis
D918_07885
I
0.614
Hba_21230
Heterorhabditis bacteriophora
Hba_21230
I
0.614
TTRE_0000068101
Trichuris trichiura
TTRE_0000068101
I
0.614
ARX
Loxodonta africana
ENSLAFG00000001779
I
0.614
nLs.2.1.2.g02156
Litomosoides sigmodontis
nLs.2.1.2.g02156
I
0.614
CRE07705
Caenorhabditis remanei
CRE07705
I
0.614
scaffold1027-EXSNAP2012.2
Pristionchus exspectatus
scaffold1027-EXSNAP2012.2
I
0.614
TCLT_0000475701
Thelazia callipaeda
TCLT_0000475701
I
0.614
CJA15792
Caenorhabditis japonica
CJA15792
I
0.614
nAv.1.0.1.g02637
Acanthocheilonema viteae
nAv.1.0.1.g02637
I
0.614
TMUE_s0002002300
Trichuris muris
TMUE_s0002002300
I
0.614
EFV52386
Trichinella spiralis
EFV52386
I
0.614
DME_0000869301
Dracunculus medinensis
DME_0000869301
I
0.614
Ppa-unc-4
Pristionchus pacificus
PPA21358
I
0.614
LOAG_17921
Loa loa
LOAG_17921
I
0.614
unc-4
Caenorhabditis elegans
WBGene00006744
I
0.614
UNCX
Homo sapiens
ENSG00000164853
D
0.613
UNCX
Tursiops truncatus
ENSTTRG00000011507
I
0.613
uncx
Danio rerio
ENSDARG00000102976
I
0.613
uncx4.1
Danio rerio
ENSDARG00000037760
I
0.613
ENSGALG00000019025
Gallus gallus
ENSGALG00000019025
I
0.613
UNCX
Pteropus vampyrus
ENSPVAG00000002725
I
0.613
ENSLACG00000009869
Latimeria chalumnae
ENSLACG00000009869
I
0.613
ENSXMAG00000009363
Xiphophorus maculatus
ENSXMAG00000009363
I
0.613
UNCX
Cavia porcellus
ENSCPOG00000023875
I
0.613
ENSXMAG00000011506
Xiphophorus maculatus
ENSXMAG00000011506
I
0.613
ENSCING00000009645
Ciona intestinalis
ENSCING00000009645
I
0.613
Myotis_brandtii_Uncx_10006127
Myotis brandtii
Myotis_brandtii_Uncx_10006127
I
0.613
Pvit_17535
Pogona vitticeps
Pvit_17535
I
0.613
Cmyd_10012401
Chelonia mydas
Cmyd_10012401
I
0.613
CGI_10007529
Crassostrea gigas
CGI_10007529
I
0.613
Alligator_sinensis_CCG005287.1
Alligator sinensis
Alligator_sinensis_CCG005287.1
I
0.613
e_gw.5.490.1
Branchiostoma floridae
e_gw.5.490.1
I
0.613
ENSAMEG00000015251
Ailuropoda melanoleuca
ENSAMEG00000015251
I
0.613
UNCX
Canis familiaris
ENSCAFG00000011794
I
0.613
ENSAPLG00000013520
Anas platyrhynchos
ENSAPLG00000013520
I
0.613
ENSAMXG00000018433
Astyanax mexicanus
ENSAMXG00000018433
I
0.613
ENSAMXG00000003796
Astyanax mexicanus
ENSAMXG00000003796
I
0.613
uncx4.1
Takifugu rubripes
ENSTRUG00000015845
I
0.613
XP_002938457
Xenopus tropicalis
XP_002938457
I
0.613
ENSONIG00000001352
Oreochromis niloticus
ENSONIG00000001352
I
0.613
ENSONIG00000003846
Oreochromis niloticus
ENSONIG00000003846
I
0.613
ENSSHAG00000001025
Sarcophilus harrisii
ENSSHAG00000001025
I
0.613
UNCX
Sus scrofa
ENSSSCG00000007555
I
0.613
uncx
Takifugu rubripes
ENSTRUG00000013503
I
0.613
ENSORLG00000004749
Oryzias latipes
ENSORLG00000004749
I
0.613
Uncx
Rattus norvegicus
ENSRNOG00000001284
I
0.613
ENSPFOG00000013598
Poecilia formosa
ENSPFOG00000013598
I
0.613
ENSPFOG00000012255
Poecilia formosa
ENSPFOG00000012255
I
0.613
UNCX
Procavia capensis
ENSPCAG00000011228
I
0.613
ENSPANG00000022875
Papio anubis
ENSPANG00000022875
I
0.613
ENSSTOG00000024762
Ictidomys tridecemlineatus
ENSSTOG00000024762
I
0.613
UNCX
Otolemur garnettii
ENSOGAG00000029082
I
0.613
ENSMPUG00000017899
Mustela putorius furo
ENSMPUG00000017899
I
0.613
ENSNLEG00000008468
Nomascus leucogenys
ENSNLEG00000008468
I
0.613
uncx
Tetraodon nigroviridis
ENSTNIG00000018604
D
0.613
ENSLOCG00000001224
Lepisosteus oculatus
ENSLOCG00000001224
I
0.613
ENSTGUG00000008332
Taeniopygia guttata
ENSTGUG00000008332
I
0.613
uncx4.1
Tetraodon nigroviridis
ENSTNIG00000008239
I
0.613
ENSMEUG00000016020
Macropus eugenii
ENSMEUG00000016020
I
0.613
Uncx
Mus musculus
ENSMUSG00000029546
D
0.613
GPLIN_001372300
Globodera pallida
GPLIN_001372300
I
0.612
CBG00998
Caenorhabditis briggsae
CBG00998
I
0.612
CapteG71005
Capitella teleta
CapteG71005
N
0.610
alx4b
Danio rerio
ENSDARG00000074442
I
0.608
WBGene00248105
Onchocerca volvulus
WBGene00248105
I
0.606
PEQ_0000070601
Parascaris equorum
PEQ_0000070601
N
0.606
SPU_001739
Strongylocentrotus purpuratus
SPU_001739
I
0.605
SMAR011174
Strigamia maritima
SMAR011174
I
0.604
SMAR011175
Strigamia maritima
SMAR011175
I
0.603
TRE_0000252001
Trichobilharzia regenti
TRE_0000252001
I
0.602
tetur04g00320
Tetranychus urticae
tetur04g00320
I
0.602
SCUD_0001346801
Schistosoma curassoni
SCUD_0001346801
I
0.602
A_05457
Schistosoma haematobium
A_05457
I
0.602
HOXC4
Procavia capensis
ENSPCAG00000011039
I
0.602
Sjc_0070190
Schistosoma japonicum
Sjc_0070190
I
0.602
MNX1
Homo sapiens
ENSG00000130675
D
0.602
LotgiG67517
Lottia gigantea
LotgiG67517
I
0.601
Sakowv30039029m.g
Saccoglossus kowalevskii
Sakowv30039029m.g
I
0.601
SMU15026085
Schmidtea mediterranea
SMU15026085
I
0.599