maker-nMf.1.1.scaf04940-augustus-gene-0.5 (Meloidogyne floridensis)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 maker-nMf.1.1.scaf04940-augustus-gene-0.5 T235041_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Lmx1a
M00432_2.00 		Mus musculus
NNDATKRN
NYMATHNN		 PBM
Berger et al.(2008)
Lmx1a_2238 		0.681 0.741
Lmx1b
M00482_2.00 		Mus musculus
NDADDRN
NYHHTHN		 PBM
Berger et al.(2008)
Lmx1b_3433 		0.681 0.741
LMX1A
M03179_2.00 		Homo sapiens
NTAATTAV
BTAATTAN		 SELEX
Jolma et al.(2013)
LMX1A_1 		0.681 0.741
LMX1B
M03153_2.00 		Homo sapiens
NTWATTRN
NYAATWAN		 SELEX
Jolma et al.(2013)
LMX1B_1 		0.681 0.741
LMX1B
M03154_2.00 		Homo sapiens
DTAATTRV
BYAATTAH		 SELEX
Jolma et al.(2013)
LMX1B_2 		0.681 0.741
LMX1A
M05215_2.00 		Homo sapiens
YTAATTAV
BTAATTAR		 SELEX
Yin et al.(2017)
LMX1A_eDBD_HT-SELEX 		0.681 0.741
LMX1B
M05153_2.00 		Homo sapiens
NNNBTAATTAN
NTAATTAVNNN		 SELEX
Yin et al.(2017)
LMX1B_eDBD_HT-SELEX 		0.681 0.741
LMX1B
M05156_2.00 		Homo sapiens
NDDTTAATTAH
DTAATTAAHHN		 SELEX
Yin et al.(2017)
LMX1B_FL_HT-SELEX 		0.681 0.741
LMX1A
M05216_2.00 		Homo sapiens
DTAAYGHN
NDCRTTAH		 SELEX
Yin et al.(2017)
LMX1A_eDBD_Methyl-HT-SELEX_1 		0.681 0.741
LMX1A
M05217_2.00 		Homo sapiens
YTAATTRN
NYAATTAR		 SELEX
Yin et al.(2017)
LMX1A_eDBD_Methyl-HT-SELEX_2 		0.681 0.741
LMX1B
M05154_2.00 		Homo sapiens
NNNBYAATTRN
NYAATTRVNNN		 SELEX
Yin et al.(2017)
LMX1B_eDBD_Methyl-HT-SELEX_1 		0.681 0.741
LMX1B
M05155_2.00 		Homo sapiens
WTAAYGAR
YTCRTTAW		 SELEX
Yin et al.(2017)
LMX1B_eDBD_Methyl-HT-SELEX_2 		0.681 0.741
LMX1B
M05157_2.00 		Homo sapiens
TTAACGAG
CTCGTTAA		 SELEX
Yin et al.(2017)
LMX1B_FL_Methyl-HT-SELEX_1 		0.681 0.741
LMX1B
M05158_2.00 		Homo sapiens
NWWTTAATTAW
WTAATTAAWWN		 SELEX
Yin et al.(2017)
LMX1B_FL_Methyl-HT-SELEX_2 		0.681 0.741
CG32105
M03873_2.00 		Drosophila melanogaster
KTAATTAR
YTAATTAM		 SELEX
Nitta et al.(2015)
CG32105_1 		0.670 0.704
CG32105
M06546_2.00 		Drosophila melanogaster
YTAATTA
TAATTAR		 B1H
Mathelier et al.(2014)
MA0178.1 		0.670 0.704
CG32105
M06368_2.00 		Drosophila melanogaster
WYTAATTAV
BTAATTARW		 B1H
Zhu et al.(2011)
CG32105_Cell_FBgn0052105 		0.670 0.704
CG32105
M06369_2.00 		Drosophila melanogaster
NNTWATTR
YAATWANN		 B1H
Zhu et al.(2011)
CG32105_SOLEXA_FBgn0052105 		0.670 0.704
SNAPOd2T00003340001
M02228_2.00 		Oikopleura dioica
NNNTAATWWN
NWWATTANNN		 PBM
Weirauch et al.(2014)
pTH6369 		0.661 0.685
CG4328
M06538_2.00 		Drosophila melanogaster
WTWATTR
YAATWAW		 B1H
Mathelier et al.(2014)
MA0182.1 		0.649 0.704
CG4328
M06352_2.00 		Drosophila melanogaster
NWWWATTR
YAATWWWN		 B1H
Zhu et al.(2011)
CG4328_Cell_FBgn0036274 		0.649 0.704
CG4328
M06353_2.00 		Drosophila melanogaster
YAATWANN
NNTWATTR		 B1H
Zhu et al.(2011)
CG4328_SOLEXA_FBgn0036274 		0.649 0.704
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
maker-nMf.1.1.scaf04940-augustus-gene-0.5-mRNA-1 Homeodomain 319 372

Links

Other Homeodomain family TFs
Other Meloidogyne floridensis TFs

Invalid Input OrderBy

361 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action