maker-nMf.1.1.scaf10633-snap-gene-0.4 (Meloidogyne floridensis)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 maker-nMf.1.1.scaf10633-snap-gene-0.4 T235052_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
NEMVEDRAFT_v1g81309
M02152_2.00 		Nematostella vectensis
NTAATDNNN
NNNHATTAN		 PBM
Weirauch et al.(2014)
pTH5477 		0.706 0.404
CBG04010
M01242_2.00 		Caenorhabditis briggsae
NNKTAATDDMN
NKHHATTAMNN		 PBM
Lambert et al.(2019)
pTH11489 		0.695 0.667
Isl2
M00458_2.00 		Mus musculus
NWDWDNN
NNHWHWN		 PBM
Berger et al.(2008)
Isl2_3430 		0.674 0.649
ISL2
M03177_2.00 		Homo sapiens
YTAAKTGB
VCAMTTAR		 SELEX
Jolma et al.(2013)
ISL2_1 		0.674 0.649
ISL1
M04908_2.00 		Homo sapiens
BTAAKTGS
SCAMTTAV		 SELEX
Yin et al.(2017)
ISL1_eDBD_HT-SELEX 		0.674 0.649
ISL1
M04910_2.00 		Homo sapiens
NTAAKTGS
SCAMTTAN		 SELEX
Yin et al.(2017)
ISL1_FL_HT-SELEX 		0.674 0.649
ISL2
M05204_2.00 		Homo sapiens
NTAAKTGS
SCAMTTAN		 SELEX
Yin et al.(2017)
ISL2_eDBD_HT-SELEX 		0.674 0.649
ISL1
M09128_2.00 		Homo sapiens
NYWRAKKGV
BCMMTYWRN		 Misc
Kulakovskiy et al.(2013)
ISL1_HUMAN.H11MO.0.A 		0.674 0.649
Isl1
M09209_2.00 		Mus musculus
NYWRAKKGV
BCMMTYWRN		 Misc
Kulakovskiy et al.(2013)
ISL1_MOUSE.H11MO.0.A 		0.674 0.649
Isl1
M09578_2.00 		Mus musculus
YTAAKKGV
BCMMTTAR		 Misc
Heinz et al.(2010)
Neuron-Isl1_GSE31456 		0.674 0.649
ISL1
M10634_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$ISL1_Q3 		0.674 0.649
ISL1
M10635_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$ISL1_Q6 		0.674 0.649
ISL2B_ONCTS
M10798_2.00 		Oncorhynchus tshawytscha Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$ISL2_02 		0.674 0.649
ISL2B_ONCTS
M10799_2.00 		Oncorhynchus tshawytscha Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$ISL2_03 		0.674 0.649
ISL2B_ONCTS
M10800_2.00 		Oncorhynchus tshawytscha Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$ISL2_04 		0.674 0.649
ISL2B_ONCTS
M10801_2.00 		Oncorhynchus tshawytscha Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$ISL2_05 		0.674 0.649
ISL1
M04909_2.00 		Homo sapiens
BTAAKTGS
SCAMTTAV		 SELEX
Yin et al.(2017)
ISL1_eDBD_Methyl-HT-SELEX 		0.674 0.649
ISL1
M04911_2.00 		Homo sapiens
BTAAKTGS
SCAMTTAV		 SELEX
Yin et al.(2017)
ISL1_FL_Methyl-HT-SELEX 		0.674 0.649
ISL2
M05205_2.00 		Homo sapiens
NTAAKTGN
NCAMTTAN		 SELEX
Yin et al.(2017)
ISL2_eDBD_Methyl-HT-SELEX 		0.674 0.649
tup
M06498_2.00 		Drosophila melanogaster
WTAATKG
CMATTAW		 B1H
Mathelier et al.(2014)
MA0248.1 		0.672 0.632
tup
M06270_2.00 		Drosophila melanogaster
SWTAATKG
CMATTAWS		 B1H
Zhu et al.(2011)
Tup_Cell_FBgn0003896 		0.672 0.632
tup
M06271_2.00 		Drosophila melanogaster
NYTAATKRV
BYMATTARN		 B1H
Zhu et al.(2011)
tup_SOLEXA_10_FBgn0003896 		0.672 0.632
tup
M06272_2.00 		Drosophila melanogaster
YTAATKR
YMATTAR		 B1H
Zhu et al.(2011)
Tup_SOLEXA_FBgn0003896 		0.672 0.632
CG18599
M06539_2.00 		Drosophila melanogaster
HTAATKA
TMATTAD		 B1H
Mathelier et al.(2014)
MA0177.1 		0.648 0.316
CG18599
M06354_2.00 		Drosophila melanogaster
HTAATKA
TMATTAD		 B1H
Zhu et al.(2011)
CG18599_Cell_FBgn0038592 		0.648 0.316
CG18599
M06355_2.00 		Drosophila melanogaster
YTAATKA
TMATTAR		 B1H
Zhu et al.(2011)
CG18599_SOLEXA_FBgn0038592 		0.648 0.316
NEMVEDRAFT_v1g205636
M02150_2.00 		Nematostella vectensis
NTAATTAN
NTAATTAN		 PBM
Weirauch et al.(2014)
pTH5491 		0.643 0.333
NEMVEDRAFT_v1g8907
M02154_2.00 		Nematostella vectensis
NTAATDRNNN
NNNYHATTAN		 PBM
Weirauch et al.(2014)
pTH6483 		0.631 0.333
PHOX2B
M00278_2.00 		Homo sapiens
NNNNNRY
RYNNNNN		 PBM
Barrera et al.(2016)
PHOX2B_Q143R 		0.608 0.368
NOTO
M03241_2.00 		Homo sapiens
NNTAATKWRN
NYWMATTANN		 SELEX
Jolma et al.(2013)
NOTO_1 		0.600 0.333
NOTO
M05390_2.00 		Homo sapiens
BTAATKRV
BYMATTAV		 SELEX
Yin et al.(2017)
NOTO_eDBD_HT-SELEX 		0.600 0.333
NOTO
M05391_2.00 		Homo sapiens
BTMATKRV
BYMATKAV		 SELEX
Yin et al.(2017)
NOTO_eDBD_Methyl-HT-SELEX 		0.600 0.333
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
maker-nMf.1.1.scaf10633-snap-gene-0.4-mRNA-1 Homeodomain 35 91

Links

Other Homeodomain family TFs
Other Meloidogyne floridensis TFs

Invalid Input OrderBy

439 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action