nAv.1.0.1.g03932 (Acanthocheilonema viteae)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 nAv.1.0.1.g03932 T235190_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Rhox8
M02103_2.00
Rattus norvegicus
NGGTGTWAH

DTWACACCN
PBM
Weirauch et al.(2014)
pTH6071
0.654 0.611
CBG01820
M01241_2.00
Caenorhabditis briggsae
NTAATCCN

NGGATTAN
PBM
Lambert et al.(2019)
pTH11454
0.638 0.870
Ptx1
M02123_2.00
Drosophila melanogaster
NTAATCYNN

NNRGATTAN
PBM
Weirauch et al.(2014)
pTH5644
0.630 0.778
Ptx1
M00562_2.00
Drosophila melanogaster
NYTAATCCBN

NVGGATTARN
PBM
Busser et al.(2012a)
Ptx1
0.630 0.778
Ptx1
M03842_2.00
Drosophila melanogaster
NTAATCCN

NGGATTAN
SELEX
Nitta et al.(2015)
Ptx1_1
0.630 0.778
Ptx1
M03843_2.00
Drosophila melanogaster
NTAATCCN

NGGATTAN
SELEX
Nitta et al.(2015)
Ptx1_2
0.630 0.778
Ptx1
M03844_2.00
Drosophila melanogaster
NCGHTAATCCN

NGGATTADCGN
SELEX
Nitta et al.(2015)
Ptx1_3
0.630 0.778
Ptx1
M06521_2.00
Drosophila melanogaster
YTAATCC

GGATTAR
B1H
Mathelier et al.(2014)
MA0201.1
0.630 0.778
Ptx1
M06319_2.00
Drosophila melanogaster
YTAATCC

GGATTAR
B1H
Zhu et al.(2011)
Ptx1_Cell_FBgn0020912
0.630 0.778
Ptx1
M06320_2.00
Drosophila melanogaster
NYTAATCC

GGATTARN
B1H
Zhu et al.(2011)
Ptx1_SOLEXA_FBgn0020912
0.630 0.778
PITX2
M00313_2.00
Homo sapiens
NWAAKHYN

NRDMTTWN
PBM
Barrera et al.(2016)
PITX2_REF
0.629 0.759
Pitx1
M00415_2.00
Mus musculus
NTAATCYNN

NNRGATTAN
PBM
Berger et al.(2008)
Pitx1_2312
0.629 0.759
Pitx3
M00428_2.00
Mus musculus
NTAAKCYN

NRGMTTAN
PBM
Berger et al.(2008)
Pitx3_3497
0.629 0.759
Pitx2
M00440_2.00
Mus musculus
NTAATCCN

NGGATTAN
PBM
Berger et al.(2008)
Pitx2_2274
0.629 0.759
PITX1
M03082_2.00
Homo sapiens
NHTAATCCN

NGGATTADN
SELEX
Jolma et al.(2013)
PITX1_1
0.629 0.759
PITX1
M03083_2.00
Homo sapiens
NHTAATCCN

NGGATTADN
SELEX
Jolma et al.(2013)
PITX1_2
0.629 0.759
PITX1
M03084_2.00
Homo sapiens
HTAATCCN

NGGATTAD
SELEX
Jolma et al.(2013)
PITX1_3
0.629 0.759
PITX3
M03111_2.00
Homo sapiens
NHTAATCCN

NGGATTADN
SELEX
Jolma et al.(2013)
PITX3_1
0.629 0.759
PITX1
M04928_2.00
Homo sapiens
NTAATCCN

NGGATTAN
SELEX
Yin et al.(2017)
PITX1_eDBD_HT-SELEX
0.629 0.759
PITX1
M04930_2.00
Homo sapiens
NTAATCCN

NGGATTAN
SELEX
Yin et al.(2017)
PITX1_FL_HT-SELEX
0.629 0.759
PITX2
M05229_2.00
Homo sapiens
NTAAKCCN

NGGMTTAN
SELEX
Yin et al.(2017)
PITX2_eDBD_HT-SELEX
0.629 0.759
PITX2
M05231_2.00
Homo sapiens
NTAATCCN

NGGATTAN
SELEX
Yin et al.(2017)
PITX2_FL_HT-SELEX
0.629 0.759
PITX3
M04997_2.00
Homo sapiens
NTAATCCN

NGGATTAN
SELEX
Yin et al.(2017)
PITX3_eDBD_HT-SELEX
0.629 0.759
Pitx1
M09182_2.00
Mus musculus
NYWAAKCCYH

DRGGMTTWRN
Misc
Kulakovskiy et al.(2013)
PITX1_MOUSE.H11MO.0.C
0.629 0.759
PITX1
M10640_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PITX1_Q4
0.629 0.759
PITX1
M10641_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PITX1_Q6
0.629 0.759
PITX2
M10720_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PITX2_Q2
0.629 0.759
PITX2
M10721_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PITX2_Q4
0.629 0.759
PITX2
M10722_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PITX2_Q6
0.629 0.759
PITX3
M10660_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PITX3_Q2
0.629 0.759
PITX3
M10661_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PITX3_Q3_01
0.629 0.759
PITX3
M10662_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PITX3_Q3
0.629 0.759
PITX2
M00314_2.00
Homo sapiens
NTAATMYN

NRKATTAN
PBM
Barrera et al.(2016)
PITX2_T114P
0.629 0.759
PITX1
M04929_2.00
Homo sapiens
NTAAKCCN

NGGMTTAN
SELEX
Yin et al.(2017)
PITX1_eDBD_Methyl-HT-SELEX
0.629 0.759
PITX1
M04931_2.00
Homo sapiens
HTAATCCN

NGGATTAD
SELEX
Yin et al.(2017)
PITX1_FL_Methyl-HT-SELEX
0.629 0.759
PITX2
M05230_2.00
Homo sapiens
HTAATCCN

NGGATTAD
SELEX
Yin et al.(2017)
PITX2_eDBD_Methyl-HT-SELEX
0.629 0.759
PITX2
M05232_2.00
Homo sapiens
YTAATCCY

RGGATTAR
SELEX
Yin et al.(2017)
PITX2_FL_Methyl-HT-SELEX
0.629 0.759
PITX3
M04998_2.00
Homo sapiens
NTAATCCN

NGGATTAN
SELEX
Yin et al.(2017)
PITX3_eDBD_Methyl-HT-SELEX
0.629 0.759
PITX2
M00310_2.00
Homo sapiens
HTAATCYN

NRGATTAD
PBM
Barrera et al.(2016)
PITX2_L100Q
0.629 0.741
PITX2
M00311_2.00
Homo sapiens
TTAATCCY

RGGATTAA
PBM
Barrera et al.(2016)
PITX2_R108H
0.624 0.741
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
nAv.1.0.1.t03932-RA Homeodomain 180 237

Links

Other Homeodomain family TFs
Other Acanthocheilonema viteae TFs

Invalid Input OrderBy

283 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action