CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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nLs.2.1.2.g05683
(
Litomosoides sigmodontis
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00046 (Homeobox)
IPR001356
nLs.2.1.2.g05683
T235421_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
CBG24578
M02065_2.00
Caenorhabditis briggsae
NNNTGACAKSTN
NASMTGTCANNN
PBM
Weirauch et al.(2014)
pTH6524
0.599
0.472
For this family, TFs with SR scores >
0.599
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
nLs.2.1.2.t05683-RA
Homeodomain
164
220
KRKAQLPTKAVELLKTWLFLHSSHPYPSEKEKAMLSRETGLQMVQINNWFINARRRI
Links
Other
Homeodomain
family TFs
Other
Litomosoides sigmodontis
TFs
18 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy