nLs.2.1.2.g08386 (Litomosoides sigmodontis)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 nLs.2.1.2.g08386 T235434_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
PBX2
M08134_2.00
Homo sapiens
NWGAKTGACABN

NVTGTCAMTCWN
ChIP-seq
Mathelier et al.(2014)
MA1113.1
0.853 0.947
PBX2
M09165_2.00
Homo sapiens
KRVHKTGATTGAWKN

NMWTCAATCAMDBYM
Misc
Kulakovskiy et al.(2013)
PBX2_HUMAN.H11MO.0.C
0.853 0.947
Pbx2
M09199_2.00
Mus musculus
KRVHKTGATTGAWKN

NMWTCAATCAMDBYM
Misc
Kulakovskiy et al.(2013)
PBX2_MOUSE.H11MO.0.C
0.853 0.947
pbx4
M02110_2.00
Tetraodon nigroviridis
TTGAYGDV

BHCRTCAA
PBM
Weirauch et al.(2014)
pTH6425
0.853 0.930
Pbx3
M09205_2.00
Mus musculus
BBBTGATTGRYNDN

NHNRYCAATCAVVV
Misc
Kulakovskiy et al.(2013)
PBX3_MOUSE.H11MO.0.A
0.853 0.930
Pbx1
M00513_2.00
Mus musculus
NNDKANNNN

NNNNTMHNN
PBM
Berger et al.(2008)
Pbx1_3203
0.853 0.912
PBX1
M05362_2.00
Homo sapiens
NTGATKGAYR

YRTCMATCAN
SELEX
Yin et al.(2017)
PBX1_eDBD_HT-SELEX
0.853 0.912
PBX1
M05364_2.00
Homo sapiens
DTGMTKGRYN

NRYCMAKCAH
SELEX
Yin et al.(2017)
PBX1_FL_HT-SELEX
0.853 0.912
PBX1
M02685_2.00
Homo sapiens
WWTGATTGATND

HNATCAATCAWW
SELEX
Mathelier et al.(2014)
MA0070.1
0.853 0.912
PBX1
M09164_2.00
Homo sapiens
DGABTGRCRG

CYGYCAVTCH
Misc
Kulakovskiy et al.(2013)
PBX1_HUMAN.H11MO.0.A
0.853 0.912
PBX1
M09561_2.00
Homo sapiens
TGABTGACAGSC

GSCTGTCAVTCA
Misc
Heinz et al.(2010)
MCF7-PBX1_GSE28007
0.853 0.912
PBX1
M10748_2.00
Homo sapiens
WTKATTRDT

AHYAATMAW
Transfac
Matys et al.(2006)
V$PBX1_01
0.853 0.912
PBX1
M10749_2.00
Homo sapiens
DNHTTGATTGATKDB

VHMATCAATCAADNH
Transfac
Matys et al.(2006)
V$PBX1_02
0.853 0.912
PBX1
M10750_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PBX1_03
0.853 0.912
PBX1
M10751_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PBX1_05
0.853 0.912
PBX1
M10752_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PBX1_10
0.853 0.912
PBX1
M10753_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PBX1_Q3
0.853 0.912
PBX1
M05363_2.00
Homo sapiens
DTGAKKGAYG

CRTCMMTCAH
SELEX
Yin et al.(2017)
PBX1_eDBD_Methyl-HT-SELEX
0.853 0.912
PBX1
M05365_2.00
Homo sapiens
MRTCAATCMH

DKGATTGAYK
SELEX
Yin et al.(2017)
PBX1_FL_Methyl-HT-SELEX
0.853 0.912
exd
M06487_2.00
Drosophila melanogaster
YRTCAAAN

NTTTGAYR
B1H
Mathelier et al.(2014)
MA0222.1
0.808 0.930
exd
M06243_2.00
Drosophila melanogaster
YRTCAAAN

NTTTGAYR
B1H
Zhu et al.(2011)
Exd_Cell_FBgn0000611
0.808 0.930
exd
M06244_2.00
Drosophila melanogaster
NWRNWYNAAA

TTTNRWNYWN
B1H
Zhu et al.(2011)
exd_FlyReg_FBgn0000611
0.808 0.930
exd
M06245_2.00
Drosophila melanogaster
NDTGAYRW

WYRTCAHN
B1H
Zhu et al.(2011)
exd_SOLEXA_2_FBgn0000611
0.808 0.930
exd
M06246_2.00
Drosophila melanogaster
NNDTGAYR

YRTCAHNN
B1H
Zhu et al.(2011)
Exd_SOLEXA_FBgn0000611
0.808 0.930
PBX4
M00277_2.00
Homo sapiens
NNDDWHDNNN

NNNHDWHHNN
PBM
Barrera et al.(2016)
PBX4_REF
0.802 0.895
PBX4
M10649_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PBX4_01
0.802 0.895
CBG10835
M01243_2.00
Caenorhabditis briggsae
NNTKAYDNN

NNHRTMANN
PBM
Lambert et al.(2019)
pTH11444
0.703 0.579
PBX4
M00276_2.00
Homo sapiens
NYTAATTADNN

NNHTAATTARN
PBM
Barrera et al.(2016)
PBX4_R215Q
0.663 0.877
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
nLs.2.1.2.t08386-RA Homeodomain 190 249

Links

Other Homeodomain family TFs
Other Litomosoides sigmodontis TFs

436 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ACOC_0000492601 Angiostrongylus costaricensis ACOC_0000492601 I 0.000
ANCCEY_07914 Ancylostoma ceylanicum ANCCEY_07914 I 0.000
ANCCEY_13226 Ancylostoma ceylanicum ANCCEY_13226 I 0.000
augustus_masked-nMf.1.1.scaf21762-processed-gene-0.0 Meloidogyne floridensis augustus_masked-nMf.1.1.scaf21762-processed-gene-0.0 I 0.000
BXY_0690000 Bursaphelenchus xylophilus BXY_0690000 I 0.000
CBG06601 Caenorhabditis briggsae CBG06601 I 0.000
CBG06611 Caenorhabditis briggsae CBG06611 I 0.000
CBG09320 Caenorhabditis briggsae CBG09320 I 0.000
CBG09567 Caenorhabditis briggsae CBG09567 I 0.000
CBG15881 Caenorhabditis briggsae CBG15881 I 0.000
CBG20727 Caenorhabditis briggsae CBG20727 I 0.000
CBG20729 Caenorhabditis briggsae CBG20729 I 0.000
CBG22870 Caenorhabditis briggsae CBG22870 I 0.000
CBN13569 Caenorhabditis brenneri CBN13569 I 0.000
CBN21486 Caenorhabditis brenneri CBN21486 I 0.000
CBN23838 Caenorhabditis brenneri CBN23838 I 0.000
CBN28290 Caenorhabditis brenneri CBN28290 I 0.000
CJA09697 Caenorhabditis japonica CJA09697 I 0.000
CJA28065 Caenorhabditis japonica CJA28065 I 0.000
CRE05044 Caenorhabditis remanei CRE05044 I 0.000
CRE08691 Caenorhabditis remanei CRE08691 I 0.000
CRE15644 Caenorhabditis remanei CRE15644 I 0.000
CRE15675 Caenorhabditis remanei CRE15675 I 0.000
CRE18430 Caenorhabditis remanei CRE18430 I 0.000
CRE18699 Caenorhabditis remanei CRE18699 I 0.000
CRE30948 Caenorhabditis remanei CRE30948 I 0.000
CRE31070 Caenorhabditis remanei CRE31070 I 0.000
EVEC_0000956701 Enterobius vermicularis EVEC_0000956701 I 0.000
GPLIN_000282900 Globodera pallida GPLIN_000282900 I 0.000
HCOI00483700 Haemonchus contortus HCOI00483700 I 0.000
HCOI01190000 Haemonchus contortus HCOI01190000 I 0.000
HPBE_0001646201 Heligmosomoides bakeri HPBE_0001646201 I 0.000
HPLM_0000277901 Haemonchus placei HPLM_0000277901 I 0.000
HPLM_0000974301 Haemonchus placei HPLM_0000974301 I 0.000
HPLM_0000974401 Haemonchus placei HPLM_0000974401 I 0.000
L596_g14532 Steinernema carpocapsae L596_g14532 I 0.000
L596_g14533 Steinernema carpocapsae L596_g14533 I 0.000
L596_g14536 Steinernema carpocapsae L596_g14536 I 0.000
L596_g14537 Steinernema carpocapsae L596_g14537 I 0.000
L596_g14586 Steinernema carpocapsae L596_g14586 I 0.000
L596_g14588 Steinernema carpocapsae L596_g14588 I 0.000
L889_g6696 Steinernema feltiae L889_g6696 I 0.000
L889_g6792 Steinernema feltiae L889_g6792 I 0.000
L889_g6797 Steinernema feltiae L889_g6797 I 0.000
L889_g6798 Steinernema feltiae L889_g6798 I 0.000
L889_g6799 Steinernema feltiae L889_g6799 I 0.000
L889_g6804 Steinernema feltiae L889_g6804 I 0.000
L889_g8187 Steinernema feltiae L889_g8187 I 0.000
L892_g10842 Steinernema scapterisci L892_g10842 I 0.000
L892_g10843 Steinernema scapterisci L892_g10843 I 0.000
L892_g14818 Steinernema scapterisci L892_g14818 I 0.000
L892_g14825 Steinernema scapterisci L892_g14825 I 0.000
L892_g2782 Steinernema scapterisci L892_g2782 I 0.000
L893_g27930 Steinernema glaseri L893_g27930 I 0.000
L898_g12798 Steinernema monticolum L898_g12798 I 0.000
L898_g19014 Steinernema monticolum L898_g19014 I 0.000
L898_g19019 Steinernema monticolum L898_g19019 I 0.000
L898_g19021 Steinernema monticolum L898_g19021 I 0.000
L898_g20180 Steinernema monticolum L898_g20180 I 0.000
L898_g3512 Steinernema monticolum L898_g3512 I 0.000
L898_g4012 Steinernema monticolum L898_g4012 I 0.000
MhA1_Contig1192.frz3.gene3 Meloidogyne hapla MhA1_Contig1192.frz3.gene3 I 0.000
Minc14668 Meloidogyne incognita Minc14668 I 0.000
NBR_0001218401 Nippostrongylus brasiliensis NBR_0001218401 I 0.000
NBR_0001834701 Nippostrongylus brasiliensis NBR_0001834701 I 0.000
NBR_0001834801 Nippostrongylus brasiliensis NBR_0001834801 I 0.000
nhr-102 Caenorhabditis elegans WBGene00003692 I 0.000
nhr-142 Caenorhabditis elegans WBGene00018430 D 0.000
nhr-170 Caenorhabditis elegans WBGene00008309 I 0.000
nhr-178 Caenorhabditis elegans WBGene00017510 I 0.000
nhr-213 Caenorhabditis elegans WBGene00011520 I 0.000
nhr-218 Caenorhabditis elegans WBGene00011750 I 0.000
nhr-231 Caenorhabditis elegans WBGene00012449 I 0.000
nhr-232 Caenorhabditis elegans WBGene00012494 D 0.000
nhr-54 Caenorhabditis elegans WBGene00003644 I 0.000
PEQ_0000560101 Parascaris equorum PEQ_0000560101 I 0.000
scaffold31-EXSNAP2012.20 Pristionchus exspectatus scaffold31-EXSNAP2012.20 I 0.000
SVUK_0001603001 Strongylus vulgaris SVUK_0001603001 I 0.000
SVUK_0002058501 Strongylus vulgaris SVUK_0002058501 I 0.000