nRc.2.0.1.g04987 (Romanomermis culicivorax)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 nRc.2.0.1.g04987 T235505_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Six3
M00483_2.00
Mus musculus
NNNAYMN

NKRTNNN
PBM
Berger et al.(2008)
Six3_1732
0.855 0.965
SIX3
M05159_2.00
Homo sapiens
NNYGATABBN

NVVTATCRNN
SELEX
Yin et al.(2017)
SIX3_eDBD_HT-SELEX
0.855 0.965
SIX3
M10698_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SIX3_Q6
0.855 0.965
SIX3
M05160_2.00
Homo sapiens
NNYGATABVB

VBVTATCRNN
SELEX
Yin et al.(2017)
SIX3_eDBD_Methyl-HT-SELEX
0.855 0.965
Optix
M02124_2.00
Drosophila melanogaster
NNNNNDATMN

NKATHNNNNN
PBM
Weirauch et al.(2014)
pTH5437
0.855 0.947
Optix
M03850_2.00
Drosophila melanogaster
TAATYTAATTA

TAATTARATTA
SELEX
Nitta et al.(2015)
Optix_1
0.855 0.947
Optix
M06526_2.00
Drosophila melanogaster
TGATA

TATCA
B1H
Mathelier et al.(2014)
MA0199.1
0.855 0.947
Optix
M06327_2.00
Drosophila melanogaster
HHVTGATA

TATCABDD
B1H
Zhu et al.(2011)
Optix_Cell_FBgn0025360
0.855 0.947
Optix
M06328_2.00
Drosophila melanogaster
NNNTGATA

TATCANNN
B1H
Zhu et al.(2011)
Optix_SOLEXA_FBgn0025360
0.855 0.947
SIX6
M00326_2.00
Homo sapiens
NNDATMB

VKATHNN
PBM
Barrera et al.(2016)
SIX6_REF
0.853 0.947
Six6
M00169_2.00
Mus musculus
NNAYMNN

NNKRTNN
PBM
Badis et al.(2009)
Six6_2267
0.853 0.947
Six6
M00412_2.00
Mus musculus
NNNTGATAYCN

NGRTATCANNN
PBM
Berger et al.(2008)
Six6_2267
0.853 0.947
SIX6
M05357_2.00
Homo sapiens
NNYGATASVB

VBSTATCRNN
SELEX
Yin et al.(2017)
SIX6_eDBD_HT-SELEX
0.853 0.947
SIX6
M00325_2.00
Homo sapiens
NNNDATMB

VKATHNNN
PBM
Barrera et al.(2016)
SIX6_H141N
0.853 0.947
SIX6
M05358_2.00
Homo sapiens
VBVYAYCRNN

NNYGRTRBVB
SELEX
Yin et al.(2017)
SIX6_eDBD_Methyl-HT-SELEX
0.853 0.947
six3
M02102_2.00
Oryzias latipes
NNDAYMBNNN

NNNVKRTHNN
PBM
Weirauch et al.(2014)
pTH5928
0.853 0.930
SIX6
M00327_2.00
Homo sapiens
NHDAYMBNN

NNVKRTHDN
PBM
Barrera et al.(2016)
SIX6_T165A
0.847 0.930
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
nRc.2.0.1.t04987-RA Homeodomain 179 235

Links

Other Homeodomain family TFs
Other Romanomermis culicivorax TFs

296 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
MCYG_01483 Arthroderma otae MCYG_01483 N 0.000
fgenesh1_pg.00009_#_431 Aspergillus carbonarius fgenesh1_pg.00009_#_431 N 0.000
ACLA_051570 Aspergillus clavatus CADACLAG00004490 N 0.000
AFUA_4G12570 Aspergillus fumigatus CADAFUAG00007816 N 0.000
ANIA_03684 Aspergillus nidulans CADANIAG00005047 N 0.000
CADANGAG00000804 Aspergillus niger CADANGAG00000804 N 0.000
EURHEDRAFT_517376 Aspergillus ruber EURHEDRAFT_517376 N 0.000
ATEG_03142 Aspergillus terreus CADATEAG00010079 N 0.000
M437DRAFT_75276 Aureobasidium melanogenum M437DRAFT_75276 N 0.000
M438DRAFT_372082 Aureobasidium pullulans M438DRAFT_372082 N 0.000
AUEXF2481DRAFT_142262 Aureobasidium subglaciale AUEXF2481DRAFT_142262 N 0.000
COCC4DRAFT_55380 Bipolaris maydis COCC4DRAFT_55380 N 0.000
COCMIDRAFT_99482 Bipolaris oryzae COCMIDRAFT_99482 N 0.000
COCSADRAFT_211993 Bipolaris sorokiniana COCSADRAFT_211993 N 0.000
COCVIDRAFT_21525 Bipolaris victoriae COCVIDRAFT_21525 N 0.000
COCCADRAFT_99015 Bipolaris zeicola COCCADRAFT_99015 N 0.000
BDDG_01240 Blastomyces dermatitidis BDDG_01240 N 0.000
PVAR5_4302 Byssochlamys spectabilis PVAR5_4302 N 0.000
A1O3_09900 Capronia epimyces A1O3_09900 N 0.000
CPUR_04456 Claviceps purpurea CPUR_04456 N 0.000
CIMG_07019 Coccidioides immitis CIMG_07019 N 0.000
CPC735_033770 Coccidioides posadasii CPC735_033770 N 0.000
DOTSEDRAFT_68895 Dothistroma septosporum DOTSEDRAFT_68895 N 0.000
EPUS_04103 Endocarpon pusillum EPUS_04103 N 0.000
EV44_g5846 Erysiphe necator EV44_g5846 N 0.000
HCBG_03684 Histoplasma capsulatum HCBG_03684 N 0.000
LEMA_P037490.1 Leptosphaeria maculans LEMA_P037490.1 N 0.000
MPH_06015 Macrophomina phaseolina MPH_06015 N 0.000
MCYG_01483 Microsporum canis MCYG_01483 N 0.000
MGYG_04587 Microsporum gypseum MGYG_04587 N 0.000
UCRNP2_5033 Neofusicoccum parvum UCRNP2_5033 N 0.000
PABG_03829 Paracoccidioides brasiliensis PABG_03829 N 0.000
PAAG_08662 Paracoccidioides sp lutzii PAAG_08662 N 0.000
Pc22g04580 Penicillium chrysogenum Pc22g04580 N 0.000
PCH_Pc22g04580 Penicillium rubens PCH_Pc22g04580 N 0.000
U727_0043414001 Penicillium solitum U727_0043414001 N 0.000
GMDG_00382 Pseudogymnoascus destructans GMDG_00382 N 0.000
PTT_13566 Pyrenophora teres PTT_13566 N 0.000
PTRG_03145 Pyrenophora triticirepentis PTRG_03145 N 0.000
SETTUDRAFT_162963 Setosphaeria turcica SETTUDRAFT_162963 N 0.000
SEPMUDRAFT_58051 Sphaerulina musiva SEPMUDRAFT_58051 N 0.000
TEQG_07593 Trichophyton equinum TEQG_07593 N 0.000
H101_01266 Trichophyton interdigitale H101_01266 N 0.000
H102_00886 Trichophyton rubrum H102_00886 N 0.000
H105_00892 Trichophyton soudanense H105_00892 N 0.000
TESG_07181 Trichophyton tonsurans TESG_07181 N 0.000
TRV_02593 Trichophyton verrucosum TRV_02593 N 0.000
UREG_05846 Uncinocarpus reesii UREG_05846 N 0.000