OESDEN_20840 (Oesophagostomum dentatum)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 OESDEN_20840 T235609_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
VSX1
M03087_2.00
Homo sapiens
YTAATTAN

NTAATTAR
SELEX
Jolma et al.(2013)
VSX1_1
0.745 0.478
VSX1
M03088_2.00
Homo sapiens
NNYAATTRRBN

NVYYAATTRNN
SELEX
Jolma et al.(2013)
VSX1_2
0.745 0.478
VSX1
M04941_2.00
Homo sapiens
YYAATTRN

NYAATTRR
SELEX
Yin et al.(2017)
VSX1_eDBD_HT-SELEX
0.745 0.478
VSX1
M04944_2.00
Homo sapiens
NTAATTRS

SYAATTAN
SELEX
Yin et al.(2017)
VSX1_FL_HT-SELEX
0.745 0.478
VSX1
M05869_2.00
Homo sapiens
DGCTAATTAN

NTAATTAGCH
SMiLE-seq
Isakova et al.(2017)
VSX1
0.745 0.478
VSX1
M04942_2.00
Homo sapiens
NTAAYGMN

NKCRTTAN
SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_1
0.745 0.478
VSX1
M04943_2.00
Homo sapiens
YYAATTRN

NYAATTRR
SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_2
0.745 0.478
VSX1
M04945_2.00
Homo sapiens
NTAATTRG

CYAATTAN
SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_1
0.745 0.478
VSX1
M04946_2.00
Homo sapiens
NTAAYGAN

NTCRTTAN
SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_2
0.745 0.478
VAX1
M03168_2.00
Homo sapiens
YTAATKAN

NTMATTAR
SELEX
Jolma et al.(2013)
VAX1_1
0.717 0.370
VAX1
M05182_2.00
Homo sapiens
BTAATTRN

NYAATTAV
SELEX
Yin et al.(2017)
VAX1_eDBD_HT-SELEX
0.717 0.370
VAX1
M05183_2.00
Homo sapiens
BTMATKRN

NYMATKAV
SELEX
Yin et al.(2017)
VAX1_eDBD_Methyl-HT-SELEX
0.717 0.370
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
OESDEN_20840 Homeodomain 40 85

Links

Other Homeodomain family TFs
Other Oesophagostomum dentatum TFs

1226 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
30147.m014242 Ricinus communis 30147.m014242 I 0.000
30174.m008818 Ricinus communis 30174.m008818 I 0.000
cassava14164.m1 Manihot esculenta cassava14164.m1 I 0.000
cassava19892.m1 Manihot esculenta cassava19892.m1 I 0.000
cassava21316.m1 Manihot esculenta cassava21316.m1 I 0.000
cassava47027.m1 Manihot esculenta cassava47027.m1 N 0.000
Ciclev10007101m.g Citrus clementina Ciclev10007101m.g I 0.000
Cla001400 Citrullus lanatus Cla001400 I 0.000
Eucgr.D02497 Eucalyptus grandis Eucgr.D02497 I 0.000
Eucgr.K00165 Eucalyptus grandis Eucgr.K00165 I 0.000
Gorai.008G106500 Gossypium raimondii Gorai.008G106500 I 0.000
Lus10038929.g Linum usitatissimum Lus10038929.g N 0.000
mgf021094m Mimulus guttatus mgf021094m I 0.000
PGSC0003DMG400026020 Solanum tuberosum PGSC0003DMG400026020 I 0.000
POPTR_0001s00800 Populus trichocarpa POPTR_0001s00800 I 0.000
SapurV1A.1544s0070 Salix purpurea SapurV1A.1544s0070 I 0.000
SapurV1A.1944s0060 Salix purpurea SapurV1A.1944s0060 I 0.000
Solyc01g090840.2 Solanum lycopersicum Solyc01g090840.2 I 0.000