CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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RSKR_0000038200
(
Rhabditophanes kr3021
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00046 (Homeobox)
IPR001356
RSKR_0000038200
T235825_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
CBG04010
M01242_2.00
Caenorhabditis briggsae
NNKTAATDDMN
NKHHATTAMNN
PBM
Lambert et al.(2019)
pTH11489
0.790
0.684
Isl2
M00458_2.00
Mus musculus
NWDWDNN
NNHWHWN
PBM
Berger et al.(2008)
Isl2_3430
0.789
0.649
ISL2
M03177_2.00
Homo sapiens
YTAAKTGB
VCAMTTAR
SELEX
Jolma et al.(2013)
ISL2_1
0.789
0.649
ISL1
M04908_2.00
Homo sapiens
BTAAKTGS
SCAMTTAV
SELEX
Yin et al.(2017)
ISL1_eDBD_HT-SELEX
0.789
0.649
ISL1
M04910_2.00
Homo sapiens
NTAAKTGS
SCAMTTAN
SELEX
Yin et al.(2017)
ISL1_FL_HT-SELEX
0.789
0.649
ISL2
M05204_2.00
Homo sapiens
NTAAKTGS
SCAMTTAN
SELEX
Yin et al.(2017)
ISL2_eDBD_HT-SELEX
0.789
0.649
ISL1
M09128_2.00
Homo sapiens
NYWRAKKGV
BCMMTYWRN
Misc
Kulakovskiy et al.(2013)
ISL1_HUMAN.H11MO.0.A
0.789
0.649
Isl1
M09209_2.00
Mus musculus
NYWRAKKGV
BCMMTYWRN
Misc
Kulakovskiy et al.(2013)
ISL1_MOUSE.H11MO.0.A
0.789
0.649
Isl1
M09578_2.00
Mus musculus
YTAAKKGV
BCMMTTAR
Misc
Heinz et al.(2010)
Neuron-Isl1_GSE31456
0.789
0.649
ISL1
M10634_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$ISL1_Q3
0.789
0.649
ISL1
M10635_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$ISL1_Q6
0.789
0.649
ISL2B_ONCTS
M10798_2.00
Oncorhynchus tshawytscha
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$ISL2_02
0.789
0.649
ISL2B_ONCTS
M10799_2.00
Oncorhynchus tshawytscha
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$ISL2_03
0.789
0.649
ISL2B_ONCTS
M10800_2.00
Oncorhynchus tshawytscha
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$ISL2_04
0.789
0.649
ISL2B_ONCTS
M10801_2.00
Oncorhynchus tshawytscha
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$ISL2_05
0.789
0.649
ISL1
M04909_2.00
Homo sapiens
BTAAKTGS
SCAMTTAV
SELEX
Yin et al.(2017)
ISL1_eDBD_Methyl-HT-SELEX
0.789
0.649
ISL1
M04911_2.00
Homo sapiens
BTAAKTGS
SCAMTTAV
SELEX
Yin et al.(2017)
ISL1_FL_Methyl-HT-SELEX
0.789
0.649
ISL2
M05205_2.00
Homo sapiens
NTAAKTGN
NCAMTTAN
SELEX
Yin et al.(2017)
ISL2_eDBD_Methyl-HT-SELEX
0.789
0.649
tup
M06498_2.00
Drosophila melanogaster
WTAATKG
CMATTAW
B1H
Mathelier et al.(2014)
MA0248.1
0.787
0.632
tup
M06270_2.00
Drosophila melanogaster
SWTAATKG
CMATTAWS
B1H
Zhu et al.(2011)
Tup_Cell_FBgn0003896
0.787
0.632
tup
M06271_2.00
Drosophila melanogaster
NYTAATKRV
BYMATTARN
B1H
Zhu et al.(2011)
tup_SOLEXA_10_FBgn0003896
0.787
0.632
tup
M06272_2.00
Drosophila melanogaster
YTAATKR
YMATTAR
B1H
Zhu et al.(2011)
Tup_SOLEXA_FBgn0003896
0.787
0.632
Noto
M02101_2.00
Mus musculus
NNHHATDDNN
NNHHATDDNN
PBM
Weirauch et al.(2014)
pTH6268
0.627
0.333
NEMVEDRAFT_v1g81309
M02152_2.00
Nematostella vectensis
NTAATDNNN
NNNHATTAN
PBM
Weirauch et al.(2014)
pTH5477
0.614
0.316
Hoxd3
M00531_2.00
Mus musculus
NTAATNDN
NHNATTAN
PBM
Berger et al.(2008)
Hoxd3_1742
0.610
0.386
Hoxd3
M03287_2.00
Mus musculus
NNTAATKRNN
NNYMATTANN
SELEX
Jolma et al.(2013)
Hoxd3_1
0.610
0.386
HOXD3
M05101_2.00
Homo sapiens
CTAATTAS
STAATTAG
SELEX
Yin et al.(2017)
HOXD3_FL_HT-SELEX
0.610
0.386
HOXD3
M05102_2.00
Homo sapiens
YTAAYGAY
RTCRTTAR
SELEX
Yin et al.(2017)
HOXD3_FL_Methyl-HT-SELEX_1
0.610
0.386
HOXD3
M05103_2.00
Homo sapiens
CTAATKAC
GTMATTAG
SELEX
Yin et al.(2017)
HOXD3_FL_Methyl-HT-SELEX_2
0.610
0.386
NOTO
M03241_2.00
Homo sapiens
NNTAATKWRN
NYWMATTANN
SELEX
Jolma et al.(2013)
NOTO_1
0.609
0.316
NOTO
M05390_2.00
Homo sapiens
BTAATKRV
BYMATTAV
SELEX
Yin et al.(2017)
NOTO_eDBD_HT-SELEX
0.609
0.316
NOTO
M05391_2.00
Homo sapiens
BTMATKRV
BYMATKAV
SELEX
Yin et al.(2017)
NOTO_eDBD_Methyl-HT-SELEX
0.609
0.316
PHOX2B
M00278_2.00
Homo sapiens
NNNNNRY
RYNNNNN
PBM
Barrera et al.(2016)
PHOX2B_Q143R
0.603
0.368
Hoxb3
M00504_2.00
Mus musculus
NTAATKRNN
NNYMATTAN
PBM
Berger et al.(2008)
Hoxb3_1720
0.602
0.386
HOXB3
M03126_2.00
Homo sapiens
NBTAATKRNN
NNYMATTAVN
SELEX
Jolma et al.(2013)
HOXB3_1
0.602
0.386
Hoxa3
M00172_2.00
Mus musculus
NTAATKRNNN
NNNYMATTAN
PBM
Badis et al.(2009)
Hoxa3_2783
0.602
0.368
Hoxa3
M00532_2.00
Mus musculus
NTAATKRNN
NNYMATTAN
PBM
Berger et al.(2008)
Hoxa3_2783
0.602
0.368
HOXA3
M10651_2.00
Homo sapiens
SVTWNDDKB
VMHHNWABS
Transfac
Matys et al.(2006)
V$HOXA3_01
0.602
0.368
For this family, TFs with SR scores >
0.599
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
RSKR_0000038200.1
Homeodomain
91
147
TRVRTVLNENQLKILKNFYQHNNRPDSATKERMAELTGLSIRCLRIWFQNKRCKDKK
Links
Other
Homeodomain
family TFs
Other
Rhabditophanes kr3021
TFs
549 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy