CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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RSKR_0000332000
(
Rhabditophanes kr3021
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00046 (Homeobox)
IPR001356
RSKR_0000332000
T235835_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
LHX2
M02085_2.00
Homo sapiens
NNNYAAHDDN
NHHDTTRNNN
PBM
Weirauch et al.(2014)
pTH5812
0.627
0.741
Lhx2
M00380_2.00
Mus musculus
NTAATKRN
NYMATTAN
PBM
Berger et al.(2008)
Lhx2_0953
0.627
0.741
Lhx9
M00406_2.00
Mus musculus
NTAATDRN
NYHATTAN
PBM
Berger et al.(2008)
Lhx9_3492
0.627
0.741
LHX2
M03106_2.00
Homo sapiens
NNTAATTAGN
NCTAATTANN
SELEX
Jolma et al.(2013)
LHX2_1
0.627
0.741
LHX2
M03107_2.00
Homo sapiens
YAATTANVCTAATTR
YAATTAGBNTAATTR
SELEX
Jolma et al.(2013)
LHX2_2
0.627
0.741
LHX9
M03163_2.00
Homo sapiens
NTAATTRN
NYAATTAN
SELEX
Jolma et al.(2013)
LHX9_1
0.627
0.741
LHX9
M03164_2.00
Homo sapiens
TAATTRGYMATTA
TAATKRCYAATTA
SELEX
Jolma et al.(2013)
LHX9_2
0.627
0.741
LHX9
M05170_2.00
Homo sapiens
YTAATTRG
CYAATTAR
SELEX
Yin et al.(2017)
LHX9_eDBD_HT-SELEX
0.627
0.741
LHX9
M05173_2.00
Homo sapiens
NTAATTRG
CYAATTAN
SELEX
Yin et al.(2017)
LHX9_FL_HT-SELEX
0.627
0.741
LHX2
M09136_2.00
Homo sapiens
NBYTAATTRVNB
VNBYAATTARVN
Misc
Kulakovskiy et al.(2013)
LHX2_HUMAN.H11MO.0.A
0.627
0.741
Lhx2
M09169_2.00
Mus musculus
NNTAATKRGN
NCYMATTANN
Misc
Kulakovskiy et al.(2013)
LHX2_MOUSE.H11MO.0.A
0.627
0.741
Lhx2
M09562_2.00
Mus musculus
NYTAATTA
TAATTARN
Misc
Heinz et al.(2010)
HFSC-Lhx2_GSE48068
0.627
0.741
LHX2
M10655_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$LHX2_Q4
0.627
0.741
LHX2
M10656_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$LHX2_Q6
0.627
0.741
LHX9
M05171_2.00
Homo sapiens
YTAATTRS
SYAATTAR
SELEX
Yin et al.(2017)
LHX9_eDBD_Methyl-HT-SELEX_1
0.627
0.741
LHX9
M05172_2.00
Homo sapiens
HTAACGAB
VTCGTTAD
SELEX
Yin et al.(2017)
LHX9_eDBD_Methyl-HT-SELEX_2
0.627
0.741
LHX9
M05174_2.00
Homo sapiens
NTAATTRV
BYAATTAN
SELEX
Yin et al.(2017)
LHX9_FL_Methyl-HT-SELEX_1
0.627
0.741
LHX9
M05175_2.00
Homo sapiens
HTAACGAB
VTCGTTAD
SELEX
Yin et al.(2017)
LHX9_FL_Methyl-HT-SELEX_2
0.627
0.741
ap
M06478_2.00
Drosophila melanogaster
YTAATKA
TMATTAR
B1H
Mathelier et al.(2014)
MA0209.1
0.626
0.704
ap
M06214_2.00
Drosophila melanogaster
VYTAATKA
TMATTARB
B1H
Zhu et al.(2011)
Ap_Cell_FBgn0000099
0.626
0.704
ap
M06215_2.00
Drosophila melanogaster
BAATHA
TDATTV
B1H
Zhu et al.(2011)
ap_FlyReg_FBgn0000099
0.626
0.704
ap
M06216_2.00
Drosophila melanogaster
HTAATKR
YMATTAD
B1H
Zhu et al.(2011)
Ap_SOLEXA_FBgn0000099
0.626
0.704
ap
M10781_2.00
Drosophila melanogaster
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
I$AP_Q6
0.626
0.704
For this family, TFs with SR scores >
0.599
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
RSKR_0000332000.1
Homeodomain
242
295
KRMRTSFKHQQLKIMRHYFNLNQNPDSKDLKNLAVKTGLTKRVLQVYFQNARSA
Links
Other
Homeodomain
family TFs
Other
Rhabditophanes kr3021
TFs
300 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy