CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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scaffold1073-EXSNAP2012.5
(
Pristionchus exspectatus
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00046 (Homeobox)
IPR001356
scaffold1073-EXSNAP2012.5
T235936_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
CRX
M00274_2.00
Homo sapiens
NMTAATCCSN
NSGGATTAKN
PBM
Barrera et al.(2016)
CRX_REF
0.646
0.579
Otx1
M00396_2.00
Mus musculus
NTAAKCYN
NRGMTTAN
PBM
Berger et al.(2008)
Otx1_2325
0.646
0.579
Otx2
M00418_2.00
Mus musculus
NTAAKMBN
NVKMTTAN
PBM
Berger et al.(2008)
Otx2_3441
0.646
0.579
Crx
M00489_2.00
Mus musculus
NWAAKMBN
NVKMTTWN
PBM
Berger et al.(2008)
Crx_3485
0.646
0.579
OTX1
M03116_2.00
Homo sapiens
NNTAAKCGGATTANN
NNTAATCCGMTTANN
SELEX
Jolma et al.(2013)
OTX1_1
0.646
0.579
OTX1
M03117_2.00
Homo sapiens
NTAATCSB
VSGATTAN
SELEX
Jolma et al.(2013)
OTX1_2
0.646
0.579
OTX2
M03197_2.00
Homo sapiens
NHTAAKCGGATTANN
NNTAATCCGMTTADN
SELEX
Jolma et al.(2013)
OTX2_1
0.646
0.579
OTX2
M03198_2.00
Homo sapiens
HTAATCCB
VGGATTAD
SELEX
Jolma et al.(2013)
OTX2_2
0.646
0.579
Otx1
M03249_2.00
Mus musculus
NNTAAKCGGATTANN
NNTAATCCGMTTANN
SELEX
Jolma et al.(2013)
Otx1_1
0.646
0.579
Otx1
M03250_2.00
Mus musculus
NTAATCCN
NGGATTAN
SELEX
Jolma et al.(2013)
Otx1_2
0.646
0.579
oc
M03808_2.00
Drosophila melanogaster
HTAATCCB
VGGATTAD
SELEX
Nitta et al.(2015)
oc_1
0.646
0.579
CRX
M04949_2.00
Homo sapiens
NTAATCCN
NGGATTAN
SELEX
Yin et al.(2017)
CRX_FL_HT-SELEX
0.646
0.579
OTX1
M05022_2.00
Homo sapiens
NTAATCCN
NGGATTAN
SELEX
Yin et al.(2017)
OTX1_eDBD_HT-SELEX
0.646
0.579
OTX1
M05024_2.00
Homo sapiens
NTAATCCNNN
NNNGGATTAN
SELEX
Yin et al.(2017)
OTX1_FL_HT-SELEX
0.646
0.579
OTX2
M05251_2.00
Homo sapiens
NTAATCCN
NGGATTAN
SELEX
Yin et al.(2017)
OTX2_FL_HT-SELEX
0.646
0.579
oc
M06502_2.00
Drosophila melanogaster
TAATCC
GGATTA
B1H
Mathelier et al.(2014)
MA0234.1
0.646
0.579
oc
M06282_2.00
Drosophila melanogaster
WTAATCC
GGATTAW
B1H
Zhu et al.(2011)
Oc_Cell_FBgn0004102
0.646
0.579
oc
M06283_2.00
Drosophila melanogaster
NTAATCCB
VGGATTAN
B1H
Zhu et al.(2011)
Oc_SOLEXA_FBgn0004102
0.646
0.579
Crx
M08139_2.00
Mus musculus
YTAATCCYCYY
RRGRGGATTAR
ChIP-seq
Mathelier et al.(2014)
MA0467.1
0.646
0.579
CRX
M09132_2.00
Homo sapiens
BYTAATCCBHYYN
NRRDVGGATTARV
Misc
Kulakovskiy et al.(2013)
CRX_HUMAN.H11MO.0.B
0.646
0.579
OTX2
M09153_2.00
Homo sapiens
BYTAATCCYYN
NRRGGATTARV
Misc
Kulakovskiy et al.(2013)
OTX2_HUMAN.H11MO.0.A
0.646
0.579
Crx
M09208_2.00
Mus musculus
BYTAATCCBHYYN
NRRDVGGATTARV
Misc
Kulakovskiy et al.(2013)
CRX_MOUSE.H11MO.0.A
0.646
0.579
Otx2
M09183_2.00
Mus musculus
HTAATCCYNYNN
NNRNRGGATTAD
Misc
Kulakovskiy et al.(2013)
OTX2_MOUSE.H11MO.0.A
0.646
0.579
Crx
M09577_2.00
Mus musculus
NYTAATCC
GGATTARN
Misc
Heinz et al.(2010)
Retina-Crx_GSE20012
0.646
0.579
Otx2
M09569_2.00
Mus musculus
NHTAATCCHB
VDGGATTADN
Misc
Heinz et al.(2010)
EpiLC-Otx2_GSE56098
0.646
0.579
oc
M09681_2.00
Drosophila melanogaster
HTAATCCN
NGGATTAD
Misc
Kulakovskiy et al.(2009)
oc
0.646
0.579
CRX
M10647_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$CRX_Q4_01
0.646
0.579
CRX
M10648_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$CRX_Q4_02
0.646
0.579
OTX1
M10673_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$OTX1_Q5
0.646
0.579
OTX2
M10727_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$OTX2_Q3_01
0.646
0.579
OTX2
M10728_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$OTX2_Q3
0.646
0.579
CRX
M00275_2.00
Homo sapiens
NMTAATCCSN
NSGGATTAKN
PBM
Barrera et al.(2016)
CRX_V66I
0.646
0.579
CRX
M04950_2.00
Homo sapiens
HTAATCCN
NGGATTAD
SELEX
Yin et al.(2017)
CRX_FL_Methyl-HT-SELEX
0.646
0.579
OTX1
M05023_2.00
Homo sapiens
NTAATCCN
NGGATTAN
SELEX
Yin et al.(2017)
OTX1_eDBD_Methyl-HT-SELEX
0.646
0.579
OTX1
M05025_2.00
Homo sapiens
HTAATCCNHN
NDNGGATTAD
SELEX
Yin et al.(2017)
OTX1_FL_Methyl-HT-SELEX
0.646
0.579
OTX2
M05252_2.00
Homo sapiens
NTAATCCN
NGGATTAN
SELEX
Yin et al.(2017)
OTX2_FL_Methyl-HT-SELEX
0.646
0.579
ceh-37
M00674_2.00
Caenorhabditis elegans
HTAATCYN
NRGATTAD
PBM
Narasimhan et al.(2015)
pTH10716
0.644
0.596
CRX
M00273_2.00
Homo sapiens
NNYTAATCCVN
NBGGATTARNN
PBM
Barrera et al.(2016)
CRX_R90W
0.636
0.561
Dmbx1
M00441_2.00
Mus musculus
NTAATCYNN
NNRGATTAN
PBM
Berger et al.(2008)
Dmbx1_2277
0.626
0.544
DMBX1
M03236_2.00
Homo sapiens
NHTAATCCBN
NVGGATTADN
SELEX
Jolma et al.(2013)
DMBX1_1
0.626
0.544
DMBX1
M05383_2.00
Homo sapiens
NTAATCSN
NSGATTAN
SELEX
Yin et al.(2017)
DMBX1_eDBD_HT-SELEX
0.626
0.544
DMBX1
M05384_2.00
Homo sapiens
HTAATCCN
NGGATTAD
SELEX
Yin et al.(2017)
DMBX1_eDBD_Methyl-HT-SELEX
0.626
0.544
CRX
M00270_2.00
Homo sapiens
NWDAKNN
NNMTHWN
PBM
Barrera et al.(2016)
CRX_E80A
0.626
0.561
ceh-53
M00679_2.00
Caenorhabditis elegans
HTAATCYN
NRGATTAD
PBM
Narasimhan et al.(2015)
pTH10699
0.622
0.544
HBX4_ECHGR
M02195_2.00
Echinococcus granulosus
NHTAATCYNN
NNRGATTADN
PBM
Weirauch et al.(2014)
pTH6301
0.618
0.544
ceh-36
M00673_2.00
Caenorhabditis elegans
NWAATCYN
NRGATTWN
PBM
Narasimhan et al.(2015)
pTH10730
0.618
0.579
CRX
M00271_2.00
Homo sapiens
NHDAKNN
NNMTHDN
PBM
Barrera et al.(2016)
CRX_R41Q
0.614
0.561
CRX
M00272_2.00
Homo sapiens
NNHNATNN
NNATNDNN
PBM
Barrera et al.(2016)
CRX_R41W
0.614
0.561
NEMVEDRAFT_v1g113057
M02144_2.00
Nematostella vectensis
NYTAATCCBN
NVGGATTARN
PBM
Weirauch et al.(2014)
pTH6135
0.606
0.509
For this family, TFs with SR scores >
0.599
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
scaffold1073-EXSNAP2012.5
Homeodomain
41
97
RRERMTYDRNQLKTLEDQFKLTPYPDASKREQLAKILNLEENRIQVWFKNRRAKQRG
Links
Other
Homeodomain
family TFs
Other
Pristionchus exspectatus
TFs
569 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy