scaffold429-EXSNAP2012.3 (Pristionchus exspectatus)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 scaffold429-EXSNAP2012.3 T235985_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Awh
M02121_2.00 		Drosophila melanogaster
NNTAATTANN
NNTAATTANN		 PBM
Weirauch et al.(2014)
pTH5759 		0.691 0.830
Awh
M03831_2.00 		Drosophila melanogaster
BTAATTRV
BYAATTAV		 SELEX
Nitta et al.(2015)
Awh_1 		0.691 0.830
Awh
M06513_2.00 		Drosophila melanogaster
YTAATTA
TAATTAR		 B1H
Mathelier et al.(2014)
MA0167.1 		0.691 0.830
Awh
M06303_2.00 		Drosophila melanogaster
YTAATTA
TAATTAR		 B1H
Zhu et al.(2011)
Awh_Cell_FBgn0013751 		0.691 0.830
Awh
M06304_2.00 		Drosophila melanogaster
YTAATKR
YMATTAR		 B1H
Zhu et al.(2011)
Awh_SOLEXA_FBgn0013751 		0.691 0.830
lim-4
M02182_2.00 		Caenorhabditis elegans
YTAATTRVN
NBYAATTAR		 PBM
Weirauch et al.(2014)
pTH6366 		0.687 0.811
ZFHX2
M02089_2.00 		Homo sapiens
NNTRATYANN
NNTRATYANN		 PBM
Weirauch et al.(2014)
pTH5642 		0.627 0.472
LHX6
M02086_2.00 		Homo sapiens
NTRATTRN
NYAATYAN		 PBM
Weirauch et al.(2014)
pTH6556 		0.599 0.566
Lhx6
M00434_2.00 		Mus musculus
NTRATTRN
NYAATYAN		 PBM
Berger et al.(2008)
Lhx6_2272 		0.599 0.566
Lhx6_CONSTRUCT
M00539_2.00 		PBM CONSTRUCTS
NNTRATTRN
NYAATYANN		 PBM
Berger et al.(2008)
Lhx6_3432 		0.599 0.566
LHX6
M03108_2.00 		Homo sapiens
VYTAATTAVB
VBTAATTARB		 SELEX
Jolma et al.(2013)
LHX6_1 		0.599 0.566
LHX6
M03109_2.00 		Homo sapiens
YAATYARYRCTAATTA
TAATTAGYRYTRATTR		 SELEX
Jolma et al.(2013)
LHX6_2 		0.599 0.566
LHX6
M03110_2.00 		Homo sapiens
TRATTGCAATYA
TRATTGCAATYA		 SELEX
Jolma et al.(2013)
LHX6_3 		0.599 0.566
LHX6
M04992_2.00 		Homo sapiens
CTAATTRV
BYAATTAG		 SELEX
Yin et al.(2017)
LHX6_FL_HT-SELEX_1 		0.599 0.566
LHX6
M04993_2.00 		Homo sapiens
TRATTGCAATYA
TRATTGCAATYA		 SELEX
Yin et al.(2017)
LHX6_FL_HT-SELEX_2 		0.599 0.566
LHX6
M05870_2.00 		Homo sapiens
NYTRATTR
YAATYARN		 SMiLE-seq
Isakova et al.(2017)
LHX6 		0.599 0.566
Lhx6
M09187_2.00 		Mus musculus
NYTGATTRV
BYAATCARN		 Misc
Kulakovskiy et al.(2013)
LHX6_MOUSE.H11MO.0.C 		0.599 0.566
LHX6
M04994_2.00 		Homo sapiens
STAATTAV
BTAATTAS		 SELEX
Yin et al.(2017)
LHX6_FL_Methyl-HT-SELEX_1 		0.599 0.566
LHX6
M04995_2.00 		Homo sapiens
HTAACGAG
CTCGTTAD		 SELEX
Yin et al.(2017)
LHX6_FL_Methyl-HT-SELEX_2 		0.599 0.566
LHX6
M04996_2.00 		Homo sapiens
TRATTGCAATYA
TRATTGCAATYA		 SELEX
Yin et al.(2017)
LHX6_FL_Methyl-HT-SELEX_3 		0.599 0.566
Lhx8
M00534_2.00 		Mus musculus
NNTRATKRN
NYMATYANN		 PBM
Berger et al.(2008)
Lhx8_2247 		0.599 0.547
Lhx8
M03288_2.00 		Mus musculus
BYRATYRVNNBTRATYRN
NYRATYAVNNBYRATYRV		 SELEX
Jolma et al.(2013)
Lhx8_1 		0.599 0.547
Lhx8
M03289_2.00 		Mus musculus
BYRATYRV
BYRATYRV		 SELEX
Jolma et al.(2013)
Lhx8_2 		0.599 0.547
Lhx8
M03290_2.00 		Mus musculus
TRATTGCAATYA
TRATTGCAATYA		 SELEX
Jolma et al.(2013)
Lhx8_3 		0.599 0.547
LHX8
M05210_2.00 		Homo sapiens
STAATTAN
NTAATTAS		 SELEX
Yin et al.(2017)
LHX8_FL_HT-SELEX_1 		0.599 0.547
LHX8
M05211_2.00 		Homo sapiens
TRATTGCAATYA
TRATTGCAATYA		 SELEX
Yin et al.(2017)
LHX8_FL_HT-SELEX_2 		0.599 0.547
LHX8
M10713_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$LHX8_06 		0.599 0.547
LHX8
M05212_2.00 		Homo sapiens
STAATYAN
NTRATTAS		 SELEX
Yin et al.(2017)
LHX8_FL_Methyl-HT-SELEX_1 		0.599 0.547
LHX8
M05213_2.00 		Homo sapiens
NTAACGAB
VTCGTTAN		 SELEX
Yin et al.(2017)
LHX8_FL_Methyl-HT-SELEX_2 		0.599 0.547
LHX8
M05214_2.00 		Homo sapiens
TRATTGCAATYA
TRATTGCAATYA		 SELEX
Yin et al.(2017)
LHX8_FL_Methyl-HT-SELEX_3 		0.599 0.547
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
scaffold429-EXSNAP2012.3 Homeodomain 187 239

Links

Other Homeodomain family TFs
Other Pristionchus exspectatus TFs

Invalid Input OrderBy

319 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action