scaffold54-EXSNAP2012.70 (Pristionchus exspectatus)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 scaffold54-EXSNAP2012.70 T235993_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
VSX1
M03087_2.00
Homo sapiens
YTAATTAN

NTAATTAR
SELEX
Jolma et al.(2013)
VSX1_1
0.696 0.273
VSX1
M03088_2.00
Homo sapiens
NNYAATTRRBN

NVYYAATTRNN
SELEX
Jolma et al.(2013)
VSX1_2
0.696 0.273
VSX1
M04941_2.00
Homo sapiens
YYAATTRN

NYAATTRR
SELEX
Yin et al.(2017)
VSX1_eDBD_HT-SELEX
0.696 0.273
VSX1
M04944_2.00
Homo sapiens
NTAATTRS

SYAATTAN
SELEX
Yin et al.(2017)
VSX1_FL_HT-SELEX
0.696 0.273
VSX1
M05869_2.00
Homo sapiens
DGCTAATTAN

NTAATTAGCH
SMiLE-seq
Isakova et al.(2017)
VSX1
0.696 0.273
VSX1
M04942_2.00
Homo sapiens
NTAAYGMN

NKCRTTAN
SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_1
0.696 0.273
VSX1
M04943_2.00
Homo sapiens
YYAATTRN

NYAATTRR
SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_2
0.696 0.273
VSX1
M04945_2.00
Homo sapiens
NTAATTRG

CYAATTAN
SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_1
0.696 0.273
VSX1
M04946_2.00
Homo sapiens
NTAAYGAN

NTCRTTAN
SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_2
0.696 0.273
VAX1
M03168_2.00
Homo sapiens
YTAATKAN

NTMATTAR
SELEX
Jolma et al.(2013)
VAX1_1
0.693 0.364
VAX1
M05182_2.00
Homo sapiens
BTAATTRN

NYAATTAV
SELEX
Yin et al.(2017)
VAX1_eDBD_HT-SELEX
0.693 0.364
VAX1
M05183_2.00
Homo sapiens
BTMATKRN

NYMATKAV
SELEX
Yin et al.(2017)
VAX1_eDBD_Methyl-HT-SELEX
0.693 0.364
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
scaffold54-EXSNAP2012.70 Homeodomain 124 167

Links

Other Homeodomain family TFs
Other Pristionchus exspectatus TFs

1250 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Gam1 Hordeum vulgare Q96464_HORVU D 0.000
myb.Ph3 Petunia x hybrida Q02994_PETHY D 0.000
MYB101 Arabidopsis thaliana AT2G32460 D 0.000
Q9FR42_TOBAC Nicotiana tabacum Q9FR42_TOBAC D 0.000
GAM1_ORYSI Oryza sativa GAM1_ORYSI D 0.000
mgf019173m Mimulus guttatus mgf019173m I 0.000
mgf010934m Mimulus guttatus mgf010934m I 0.000
mgf002965m Mimulus guttatus mgf002965m I 0.000
Ciclev10010620m.g Citrus clementina Ciclev10010620m.g I 0.000
gw1.66.160.1 Physcomitrella patens gw1.66.160.1 I 0.000
gw1.238.44.1 Physcomitrella patens gw1.238.44.1 I 0.000
e_gw1.6.239.1 Physcomitrella patens e_gw1.6.239.1 I 0.000
Cucsa.364400 Cucumis sativus Cucsa.364400 I 0.000
mgf020500m Mimulus guttatus mgf020500m I 0.000
mgf025568m Mimulus guttatus mgf025568m I 0.000
Aquca_005_00025 Aquilegia coerulea Aquca_005_00025 I 0.000
Ciclev10000756m.g Citrus clementina Ciclev10000756m.g I 0.000
Carubv10026070m.g Capsella rubella Carubv10026070m.g I 0.000
Carubv10025227m.g Capsella rubella Carubv10025227m.g I 0.000
Carubv10000715m.g Capsella rubella Carubv10000715m.g I 0.000
Cagra.2117s0052 Capsella grandiflora Cagra.2117s0052 I 0.000
Cagra.1629s0073 Capsella grandiflora Cagra.1629s0073 I 0.000
Cagra.0352s0034 Capsella grandiflora Cagra.0352s0034 I 0.000
Bostr.26833s0761 Boechera stricta Bostr.26833s0761 I 0.000
Bostr.23794s0867 Boechera stricta Bostr.23794s0867 I 0.000
Bostr.13129s0364 Boechera stricta Bostr.13129s0364 I 0.000
Aquca_014_00928 Aquilegia coerulea Aquca_014_00928 I 0.000
Cucsa.148580 Cucumis sativus Cucsa.148580 I 0.000
Cucsa.060080 Cucumis sativus Cucsa.060080 I 0.000
cassava44767.m1 Manihot esculenta cassava44767.m1 I 0.000
Ca_25013 Cicer arietinum Ca_25013 I 0.000
Ca_21739 Cicer arietinum Ca_21739 I 0.000
Ca_20081 Cicer arietinum Ca_20081 I 0.000
Ca_07119 Cicer arietinum Ca_07119 I 0.000
VIT_19s0090g00590 Vitis vinifera VIT_19s0090g00590 I 0.000
VIT_13s0067g01630 Vitis vinifera VIT_13s0067g01630 I 0.000
MYB101 Vitis vinifera VIT_12s0059g00700 I 0.000
VIT_06s0009g02480 Vitis vinifera VIT_06s0009g02480 I 0.000
TRIUR3_27104 Triticum urartu TRIUR3_27104 I 0.000
Cla005406 Citrullus lanatus Cla005406 I 0.000
Cla007782 Citrullus lanatus Cla007782 I 0.000
Cla013880 Citrullus lanatus Cla013880 I 0.000
cassava40302.m1 Manihot esculenta cassava40302.m1 I 0.000
cassava30977.valid.m1 Manihot esculenta cassava30977.valid.m1 I 0.000
cassava1461.valid.m1 Manihot esculenta cassava1461.valid.m1 I 0.000
cassava11031.m1 Manihot esculenta cassava11031.m1 I 0.000
29823.m000215 Ricinus communis 29823.m000215 I 0.000
29785.m000932 Ricinus communis 29785.m000932 I 0.000
29686.m000890 Ricinus communis 29686.m000890 I 0.000
Pm016605 Prunus mume Pm016605 I 0.000
Pm015094 Prunus mume Pm015094 I 0.000
TRIUR3_17146 Triticum urartu TRIUR3_17146 I 0.000
Ciclev10014958m.g Citrus clementina Ciclev10014958m.g I 0.000
PDK_20s1831811g001 Phoenix dactylifera PDK_20s1831811g001 I 0.000
SapurV1A.0008s0050 Salix purpurea SapurV1A.0008s0050 I 0.000
Pavir.Eb03517 Panicum virgatum Pavir.Eb03517 I 0.000
Pavir.Ea03206 Panicum virgatum Pavir.Ea03206 I 0.000
Pavir.Db00593 Panicum virgatum Pavir.Db00593 I 0.000
Pavir.Da00534 Panicum virgatum Pavir.Da00534 I 0.000
Pavir.Da00077 Panicum virgatum Pavir.Da00077 I 0.000
orange1.1g046419m.g Citrus sinensis orange1.1g046419m.g I 0.000
orange1.1g039708m.g Citrus sinensis orange1.1g039708m.g I 0.000
orange1.1g011938m.g Citrus sinensis orange1.1g011938m.g I 0.000
MDP0000308617 Malus domestica MDP0000308617 I 0.000
SapurV1A.0014s1240 Salix purpurea SapurV1A.0014s1240 I 0.000
SapurV1A.0369s0230 Salix purpurea SapurV1A.0369s0230 I 0.000
SapurV1A.0537s0200 Salix purpurea SapurV1A.0537s0200 I 0.000
LjT02G13.10.nc Lotus japonicus LjT02G13.10.nc I 0.000
LjSGA_010688.1 Lotus japonicus LjSGA_010688.1 I 0.000
chr3.CM0005.370.nc Lotus japonicus chr3.CM0005.370.nc I 0.000
PK15478.1 Cannabis sativa PK15478.1 I 0.000
Thhalv10016567m.g Eutrema salsugineum Thhalv10016567m.g I 0.000
Thhalv10013329m.g Eutrema salsugineum Thhalv10013329m.g I 0.000
Thhalv10013018m.g Eutrema salsugineum Thhalv10013018m.g I 0.000
SapurV1A.2567s0040 Salix purpurea SapurV1A.2567s0040 I 0.000
SapurV1A.1951s0020 Salix purpurea SapurV1A.1951s0020 I 0.000
SapurV1A.1897s0070 Salix purpurea SapurV1A.1897s0070 I 0.000
MDP0000179306 Malus domestica MDP0000179306 I 0.000
MDP0000176798 Malus domestica MDP0000176798 I 0.000
Gorai.010G212500 Gossypium raimondii Gorai.010G212500 I 0.000
Gorai.009G301100 Gossypium raimondii Gorai.009G301100 I 0.000
Gorai.006G121900 Gossypium raimondii Gorai.006G121900 I 0.000
Gorai.002G089900 Gossypium raimondii Gorai.002G089900 I 0.000
gene23946-v1.0-hybrid Fragaria vesca gene23946-v1.0-hybrid I 0.000
gene03323-v1.0-hybrid Fragaria vesca gene03323-v1.0-hybrid I 0.000
gene03321-v1.0-hybrid Fragaria vesca gene03321-v1.0-hybrid I 0.000
evm.TU.supercontig_34.210 Carica papaya evm.TU.supercontig_34.210 I 0.000
evm.TU.supercontig_33.151 Carica papaya evm.TU.supercontig_33.151 I 0.000
Eucgr.G03183 Eucalyptus grandis Eucgr.G03183 I 0.000
Gorai.012G022000 Gossypium raimondii Gorai.012G022000 I 0.000
Gorai.013G159200 Gossypium raimondii Gorai.013G159200 I 0.000
Lus10008685.g Linum usitatissimum Lus10008685.g I 0.000
MDP0000175835 Malus domestica MDP0000175835 I 0.000
MDP0000151688 Malus domestica MDP0000151688 I 0.000
MDP0000147309 Malus domestica MDP0000147309 I 0.000
Lus10040063.g Linum usitatissimum Lus10040063.g I 0.000
Lus10036103.g Linum usitatissimum Lus10036103.g I 0.000
Lus10035275.g Linum usitatissimum Lus10035275.g I 0.000
Lus10027189.g Linum usitatissimum Lus10027189.g I 0.000
Lus10026787.g Linum usitatissimum Lus10026787.g I 0.000
Lus10026142.g Linum usitatissimum Lus10026142.g I 0.000
Lus10021539.g Linum usitatissimum Lus10021539.g I 0.000
Eucgr.A01122 Eucalyptus grandis Eucgr.A01122 I 0.000
TRIUR3_15006 Triticum urartu TRIUR3_15006 I 0.000
OGLUM06G26120 Oryza glumaepatula OGLUM06G26120 I 0.000
LPERR06G20610 Leersia perrieri LPERR06G20610 I 0.000
LPERR05G16930 Leersia perrieri LPERR05G16930 I 0.000
GSMUA_AchrUn_randomG15100_001 Musa acuminata GSMUA_AchrUn_randomG15100_001 I 0.000
GSMUA_Achr1G17150_001 Musa acuminata GSMUA_Achr1G17150_001 I 0.000
GRMZM2G139688 Zea mays GRMZM2G139688 I 0.000
GLYMA18G10921 Glycine max GLYMA18G10921 I 0.000
GLYMA15G35860 Glycine max GLYMA15G35860 I 0.000
GLYMA13G38521 Glycine max GLYMA13G38521 I 0.000
GLYMA13G25716 Glycine max GLYMA13G25716 I 0.000
GLYMA12G31950 Glycine max GLYMA12G31950 I 0.000
MTR_2g088170 Medicago truncatula MTR_2g088170 I 0.000
MTR_3g011610 Medicago truncatula MTR_3g011610 I 0.000
OGLUM06G21530 Oryza glumaepatula OGLUM06G21530 I 0.000
OGLUM05G22330 Oryza glumaepatula OGLUM05G22330 I 0.000
OGLUM01G20920 Oryza glumaepatula OGLUM01G20920 I 0.000
OBART06G20450 Oryza barthii OBART06G20450 I 0.000
OBART05G21120 Oryza barthii OBART05G21120 I 0.000
OBART01G34660 Oryza barthii OBART01G34660 I 0.000
OB01G43550 Oryza brachyantha OB01G43550 I 0.000
MTR_8g042410 Medicago truncatula MTR_8g042410 I 0.000
MTR_3g052450 Medicago truncatula MTR_3g052450 I 0.000
MTR_3g052430 Medicago truncatula MTR_3g052430 I 0.000
GLYMA08G42955 Glycine max GLYMA08G42955 I 0.000
GLYMA08G42920 Glycine max GLYMA08G42920 I 0.000
GLYMA06G47000 Glycine max GLYMA06G47000 I 0.000
Bo9g119060 Brassica oleracea Bo9g119060 I 0.000
Bo4g178040 Brassica oleracea Bo4g178040 I 0.000
Bo4g076940 Brassica oleracea Bo4g076940 I 0.000
Bo4g046000 Brassica oleracea Bo4g046000 I 0.000
Bo3g026690 Brassica oleracea Bo3g026690 I 0.000
BGIOSGA020673 Oryza indica BGIOSGA020673 I 0.000
BGIOSGA017818 Oryza indica BGIOSGA017818 I 0.000
GAM1 Oryza indica BGIOSGA004670 I 0.000
ATMYB120 Arabidopsis thaliana AT5G55020 I 0.000
AMTR_s00038p00150140 Amborella trichopoda AMTR_s00038p00150140 I 0.000
Bra002938 Brassica rapa Bra002938 I 0.000
Bra005597 Brassica rapa Bra005597 I 0.000
GLYMA04G15150 Glycine max GLYMA04G15150 I 0.000
MYB33 Arabidopsis lyrata fgenesh2_kg.6__546__AT5G06100.3 I 0.000
MYB101 Arabidopsis lyrata fgenesh2_kg.4__1233__AT2G32460.2 I 0.000
F775_28392 Aegilops tauschii F775_28392 I 0.000
F775_00954 Aegilops tauschii F775_00954 I 0.000
BRADI2G53010 Brachypodium distachyon BRADI2G53010 I 0.000
BRADI1G32720 Brachypodium distachyon BRADI1G32720 I 0.000
Bra022888 Brassica rapa Bra022888 I 0.000
Bra021791 Brassica rapa Bra021791 I 0.000
Bra012038 Brassica rapa Bra012038 I 0.000
AMTR_s00037p00177500 Amborella trichopoda AMTR_s00037p00177500 I 0.000
OLONG_019401 Oryza longistaminata OLONG_019401 I 0.000
Traes_7DL_FAF2AE9FB Triticum aestivum Traes_7DL_FAF2AE9FB I 0.000
SELMODRAFT_81112 Selaginella moellendorffii SELMODRAFT_81112 I 0.000
SELMODRAFT_128781 Selaginella moellendorffii SELMODRAFT_128781 I 0.000
SELMODRAFT_117411 Selaginella moellendorffii SELMODRAFT_117411 I 0.000
Sb10g027280 Sorghum bicolor Sb10g027280 I 0.000
Sb10g023665 Sorghum bicolor Sb10g023665 I 0.000
Sb03g037680 Sorghum bicolor Sb03g037680 I 0.000
PRUPE_ppa022465mg Prunus persica PRUPE_ppa022465mg I 0.000
PRUPE_ppa019943mg Prunus persica PRUPE_ppa019943mg I 0.000
PRUPE_ppa017451mg Prunus persica PRUPE_ppa017451mg I 0.000
PRUPE_ppa003628mg Prunus persica PRUPE_ppa003628mg I 0.000
SELMODRAFT_84369 Selaginella moellendorffii SELMODRAFT_84369 I 0.000
Si000907m.g Setaria italica Si000907m.g I 0.000
Si006555m.g Setaria italica Si006555m.g I 0.000
Traes_7AL_0AD4A7A87 Triticum aestivum Traes_7AL_0AD4A7A87 I 0.000
TRAES3BF027700010CFD_g Triticum aestivum TRAES3BF027700010CFD_g I 0.000
TCM_044611 Theobroma cacao TCM_044611 I 0.000
TCM_041010 Theobroma cacao TCM_041010 I 0.000
TCM_030853 Theobroma cacao TCM_030853 I 0.000
TCM_011907 Theobroma cacao TCM_011907 I 0.000
Solyc07g052300.2 Solanum lycopersicum Solyc07g052300.2 I 0.000
Solyc06g073640.2 Solanum lycopersicum Solyc06g073640.2 I 0.000
Solyc01g009070.2 Solanum lycopersicum Solyc01g009070.2 I 0.000
Si007070m.g Setaria italica Si007070m.g I 0.000
POPTR_0009s02380 Populus trichocarpa POPTR_0009s02380 I 0.000
POPTR_0003s18900 Populus trichocarpa POPTR_0003s18900 I 0.000
ORGLA06G0168900 Oryza glaberrima ORGLA06G0168900 I 0.000
OPUNC06G22490 Oryza punctata OPUNC06G22490 I 0.000
OPUNC06G18670 Oryza punctata OPUNC06G18670 I 0.000
OPUNC05G18800 Oryza punctata OPUNC05G18800 I 0.000
ONIVA06G28020 Oryza nivara ONIVA06G28020 I 0.000
ONIVA06G24230 Oryza nivara ONIVA06G24230 I 0.000
ONIVA05G21800 Oryza nivara ONIVA05G21800 I 0.000
OMERI06G24960 Oryza meridionalis OMERI06G24960 I 0.000
OMERI06G21070 Oryza meridionalis OMERI06G21070 I 0.000
OMERI01G31990 Oryza meridionalis OMERI01G31990 I 0.000
ORUFI05G22370 Oryza rufipogon ORUFI05G22370 I 0.000
ORUFI06G21880 Oryza rufipogon ORUFI06G21880 I 0.000
ORUFI06G26670 Oryza rufipogon ORUFI06G26670 I 0.000
MYB101 Populus trichocarpa POPTR_0002s21300 I 0.000
POPTR_0001s07330 Populus trichocarpa POPTR_0001s07330 I 0.000
PGSC0003DMG400028949 Solanum tuberosum PGSC0003DMG400028949 I 0.000
PGSC0003DMG400022689 Solanum tuberosum PGSC0003DMG400022689 I 0.000
PGSC0003DMG400013897 Solanum tuberosum PGSC0003DMG400013897 I 0.000
PGSC0003DMG400005918 Solanum tuberosum PGSC0003DMG400005918 I 0.000
OS06G0679400 Oryza sativa OS06G0679400 I 0.000
OS05G0490600 Oryza sativa OS05G0490600 I 0.000
GAMYB Oryza sativa OS01G0812000 I 0.000
OLONG_020610 Oryza longistaminata OLONG_020610 I 0.000
LPERR06G17110 Leersia perrieri LPERR06G17110 N 0.000