scaffold70-EXSNAP2012.27 (Pristionchus exspectatus)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 scaffold70-EXSNAP2012.27 T236000_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
CBG10835
M01243_2.00
Caenorhabditis briggsae
NNTKAYDNN

NNHRTMANN
PBM
Lambert et al.(2019)
pTH11444
0.640 0.561
Pbx1
M00513_2.00
Mus musculus
NNDKANNNN

NNNNTMHNN
PBM
Berger et al.(2008)
Pbx1_3203
0.627 0.526
PBX1
M05362_2.00
Homo sapiens
NTGATKGAYR

YRTCMATCAN
SELEX
Yin et al.(2017)
PBX1_eDBD_HT-SELEX
0.627 0.526
PBX1
M05364_2.00
Homo sapiens
DTGMTKGRYN

NRYCMAKCAH
SELEX
Yin et al.(2017)
PBX1_FL_HT-SELEX
0.627 0.526
PBX1
M02685_2.00
Homo sapiens
WWTGATTGATND

HNATCAATCAWW
SELEX
Mathelier et al.(2014)
MA0070.1
0.627 0.526
PBX1
M09164_2.00
Homo sapiens
DGABTGRCRG

CYGYCAVTCH
Misc
Kulakovskiy et al.(2013)
PBX1_HUMAN.H11MO.0.A
0.627 0.526
Pbx3
M09205_2.00
Mus musculus
BBBTGATTGRYNDN

NHNRYCAATCAVVV
Misc
Kulakovskiy et al.(2013)
PBX3_MOUSE.H11MO.0.A
0.627 0.526
PBX1
M09561_2.00
Homo sapiens
TGABTGACAGSC

GSCTGTCAVTCA
Misc
Heinz et al.(2010)
MCF7-PBX1_GSE28007
0.627 0.526
PBX1
M10748_2.00
Homo sapiens
WTKATTRDT

AHYAATMAW
Transfac
Matys et al.(2006)
V$PBX1_01
0.627 0.526
PBX1
M10749_2.00
Homo sapiens
DNHTTGATTGATKDB

VHMATCAATCAADNH
Transfac
Matys et al.(2006)
V$PBX1_02
0.627 0.526
PBX1
M10750_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PBX1_03
0.627 0.526
PBX1
M10751_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PBX1_05
0.627 0.526
PBX1
M10752_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PBX1_10
0.627 0.526
PBX1
M10753_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PBX1_Q3
0.627 0.526
PBX1
M05363_2.00
Homo sapiens
DTGAKKGAYG

CRTCMMTCAH
SELEX
Yin et al.(2017)
PBX1_eDBD_Methyl-HT-SELEX
0.627 0.526
PBX1
M05365_2.00
Homo sapiens
MRTCAATCMH

DKGATTGAYK
SELEX
Yin et al.(2017)
PBX1_FL_Methyl-HT-SELEX
0.627 0.526
pbx4
M02110_2.00
Tetraodon nigroviridis
TTGAYGDV

BHCRTCAA
PBM
Weirauch et al.(2014)
pTH6425
0.627 0.509
PBX2
M08134_2.00
Homo sapiens
NWGAKTGACABN

NVTGTCAMTCWN
ChIP-seq
Mathelier et al.(2014)
MA1113.1
0.627 0.509
PBX2
M09165_2.00
Homo sapiens
KRVHKTGATTGAWKN

NMWTCAATCAMDBYM
Misc
Kulakovskiy et al.(2013)
PBX2_HUMAN.H11MO.0.C
0.627 0.509
Pbx2
M09199_2.00
Mus musculus
KRVHKTGATTGAWKN

NMWTCAATCAMDBYM
Misc
Kulakovskiy et al.(2013)
PBX2_MOUSE.H11MO.0.C
0.627 0.509
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
scaffold70-EXSNAP2012.27 Homeodomain 6 65

Links

Other Homeodomain family TFs
Other Pristionchus exspectatus TFs

Invalid Input OrderBy

345 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action