SROB_0001144101 (Schistosoma rodhaini)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 SROB_0001144101 T236412_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Six4
M00563_2.00
Drosophila melanogaster
NNDANMHNN

NNDKNTHNN
PBM
Busser et al.(2012a)
Six4
0.634 0.614
Six4
M06530_2.00
Drosophila melanogaster
TGABAC

GTVTCA
B1H
Mathelier et al.(2014)
MA0204.1
0.634 0.614
Six4
M06334_2.00
Drosophila melanogaster
WDDTGABAC

GTVTCAHHW
B1H
Zhu et al.(2011)
Six4_Cell_FBgn0027364
0.634 0.614
Six4
M06335_2.00
Drosophila melanogaster
NTGAKACB

VGTMTCAN
B1H
Zhu et al.(2011)
Six4_SOLEXA_2_FBgn0027364
0.634 0.614
Six4
M06336_2.00
Drosophila melanogaster
NNNTGABA

TVTCANNN
B1H
Zhu et al.(2011)
Six4_SOLEXA_FBgn0027364
0.634 0.614
SIX5
M08208_2.00
Homo sapiens
GARWTGTAGT

ACTACAWYTC
ChIP-seq
Contrino et al.(2012)
Mv121
0.620 0.509
SIX5
M08209_2.00
Homo sapiens
GGAGTTGT

ACAACTCC
ChIP-seq
Contrino et al.(2012)
Mv123
0.620 0.509
SIX5
M10738_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SIX5_01
0.620 0.509
SIX5
M10739_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SIX5_02
0.620 0.509
Six2
M00425_2.00
Mus musculus
NNAYMYNN

NNRKRTNN
PBM
Berger et al.(2008)
Six2_2307
0.607 0.596
Six1
M00512_2.00
Mus musculus
NNDATMYNNN

NNNRKATHNN
PBM
Berger et al.(2008)
Six1_0935
0.607 0.596
SIX1
M05094_2.00
Homo sapiens
NNYGATACVB

VBGTATCRNN
SELEX
Yin et al.(2017)
SIX1_eDBD_HT-SELEX
0.607 0.596
SIX1
M05096_2.00
Homo sapiens
NNYGATAYVB

VBRTATCRNN
SELEX
Yin et al.(2017)
SIX1_FL_HT-SELEX
0.607 0.596
SIX2
M05285_2.00
Homo sapiens
NNYGATACSB

VSGTATCRNN
SELEX
Yin et al.(2017)
SIX2_eDBD_HT-SELEX
0.607 0.596
SIX2
M05287_2.00
Homo sapiens
NSGTRWCRYN

NRYGWYACSN
SELEX
Yin et al.(2017)
SIX2_FL_HT-SELEX
0.607 0.596
SIX1
M08130_2.00
Homo sapiens
GWAACCTGANM

KNTCAGGTTWC
ChIP-seq
Mathelier et al.(2014)
MA1118.1
0.607 0.596
SIX2
M08133_2.00
Homo sapiens
NNNTGWAACCTGAKMH

DKMTCAGGTTWCANNN
ChIP-seq
Mathelier et al.(2014)
MA1119.1
0.607 0.596
SIX1
M09142_2.00
Homo sapiens
DGWAAYHTGABMYN

NRKVTCADRTTWCH
Misc
Kulakovskiy et al.(2013)
SIX1_HUMAN.H11MO.0.A
0.607 0.596
SIX2
M09157_2.00
Homo sapiens
DGWAAYHHGABMH

DKVTCDDRTTWCH
Misc
Kulakovskiy et al.(2013)
SIX2_HUMAN.H11MO.0.A
0.607 0.596
Six2
M09185_2.00
Mus musculus
DGWAAYHYRABMYB

VRKVTYRDRTTWCH
Misc
Kulakovskiy et al.(2013)
SIX2_MOUSE.H11MO.0.A
0.607 0.596
Six1
M09579_2.00
Mus musculus
GWAAYHTGABMH

DKVTCADRTTWC
Misc
Heinz et al.(2010)
Myoblast-Six1_GSE20150
0.607 0.596
SIX1
M10684_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SIX1_Q3_01
0.607 0.596
SIX1
M10685_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SIX1_Q3
0.607 0.596
SIX1
M05095_2.00
Homo sapiens
NNYGATABNB

VNVTATCRNN
SELEX
Yin et al.(2017)
SIX1_eDBD_Methyl-HT-SELEX
0.607 0.596
SIX1
M05097_2.00
Homo sapiens
NNYGATAYSB

VSRTATCRNN
SELEX
Yin et al.(2017)
SIX1_FL_Methyl-HT-SELEX
0.607 0.596
SIX2
M05286_2.00
Homo sapiens
NBRTATCRNN

NNYGATAYVN
SELEX
Yin et al.(2017)
SIX2_eDBD_Methyl-HT-SELEX
0.607 0.596
SIX2
M05288_2.00
Homo sapiens
VBRTAWCRNN

NNYGWTAYVB
SELEX
Yin et al.(2017)
SIX2_FL_Methyl-HT-SELEX
0.607 0.596
so
M02117_2.00
Drosophila melanogaster
NDATMYNNN

NNNRKATHN
PBM
Weirauch et al.(2014)
pTH5690
0.607 0.579
so
M03800_2.00
Drosophila melanogaster
NYGATAYB

VRTATCRN
SELEX
Nitta et al.(2015)
so_1
0.607 0.579
so
M03801_2.00
Drosophila melanogaster
YKATAYNNNYGATAY

RTATCRNNNRTATMR
SELEX
Nitta et al.(2015)
so_2
0.607 0.579
so
M03802_2.00
Drosophila melanogaster
YGATACGTATCR

YGATACGTATCR
SELEX
Nitta et al.(2015)
so_3
0.607 0.579
so
M03803_2.00
Drosophila melanogaster
RTATCRYGATAC

GTATCRYGATAY
SELEX
Nitta et al.(2015)
so_4
0.607 0.579
so
M06497_2.00
Drosophila melanogaster
TGATAC

GTATCA
B1H
Mathelier et al.(2014)
MA0246.1
0.607 0.579
so
M06268_2.00
Drosophila melanogaster
NRTGATA

TATCAYN
B1H
Zhu et al.(2011)
So_Cell_FBgn0003460
0.607 0.579
so
M06269_2.00
Drosophila melanogaster
NNNTGATA

TATCANNN
B1H
Zhu et al.(2011)
So_SOLEXA_FBgn0003460
0.607 0.579
Six4
M00461_2.00
Mus musculus
NNKABMHNN

NNDKVTMNN
PBM
Berger et al.(2008)
Six4_2860
0.600 0.579
SIX4
M04939_2.00
Homo sapiens
NVYGATACVB

VBGTATCRBN
SELEX
Yin et al.(2017)
SIX4_eDBD_HT-SELEX
0.600 0.579
Six4
M09198_2.00
Mus musculus
DGDAABHNSASNNN

NNNSTSNDVTTHCH
Misc
Kulakovskiy et al.(2013)
SIX4_MOUSE.H11MO.0.C
0.600 0.579
SIX4
M10646_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SIX4_Q3
0.600 0.579
SIX4
M04940_2.00
Homo sapiens
NBGTAWCRHN

NDYGWTACVN
SELEX
Yin et al.(2017)
SIX4_eDBD_Methyl-HT-SELEX
0.600 0.579
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
SROB_0001144101-mRNA-1 Homeodomain 119 175

Links

Other Homeodomain family TFs
Other Schistosoma rodhaini TFs

471 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ACYPI002885 Acyrthosiphon pisum ACYPI002885 I 0.000
AAEL000236 Aedes aegypti AAEL000236 I 0.000
Alligator_sinensis_CCG003246.1 Alligator sinensis Alligator_sinensis_CCG003246.1 N 0.000
ANCCAN_30535 Ancylostoma caninum ANCCAN_30535 I 0.000
ANCCEY_07256 Ancylostoma ceylanicum ANCCEY_07256 I 0.000
ACAC_0000772401 Angiostrongylus cantonensis ACAC_0000772401 I 0.000
ACOC_0000013301 Angiostrongylus costaricensis ACOC_0000013301 I 0.000
AALB006646 Anopheles albimanus AALB006646 I 0.000
AARA001108 Anopheles arabiensis AARA001108 I 0.000
AATE003062 Anopheles atroparvus AATE003062 I 0.000
ACHR005020 Anopheles christyi ACHR005020 I 0.000
ACUA020854 Anopheles culicifacies ACUA020854 I 0.000
ADIR000975 Anopheles dirus ADIR000975 I 0.000
AEPI005796 Anopheles epiroticus AEPI005796 I 0.000
AFAF018179 Anopheles farauti AFAF018179 I 0.000
AFUN011568 Anopheles funestus AFUN011568 I 0.000
AGAP000069 Anopheles gambiae AGAP000069 I 0.000
AMAM011474 Anopheles maculatus AMAM011474 I 0.000
AMEC012184 Anopheles melas AMEC012184 I 0.000
AMEM007373 Anopheles merus AMEM007373 I 0.000
AMIN002134 Anopheles minimus AMIN002134 I 0.000
AQUA008315 Anopheles quadriannulatus AQUA008315 I 0.000
ASIS005525 Anopheles sinensis ASIS005525 I 0.000
ASTEI06209 Anopheles stephensi ASTEI06209 I 0.000
GB50374 Apis mellifera GB50374 I 0.000
ASU_00906 Ascaris suum ASU_00906 I 0.000
ACEP16720 Atta cephalotes ACEP16720 I 0.000
BGLB003447 Biomphalaria glabrata BGLB003447 I 0.000
BGIBMGA001488 Bombyx mori BGIBMGA001488 I 0.000
e_gw.6.414.1 Branchiostoma floridae e_gw.6.414.1 I 0.000
BTMF_0001614201 Brugia timori BTMF_0001614201 I 0.000
BXY_1193200 Bursaphelenchus xylophilus BXY_1193200 I 0.000
CBN31271 Caenorhabditis brenneri CBN31271 I 0.000
CBG12232 Caenorhabditis briggsae CBG12232 I 0.000
fkh-10 Caenorhabditis elegans WBGene00001442 I 0.000
CJA06474 Caenorhabditis japonica CJA06474 N 0.000
CRE23967 Caenorhabditis remanei CRE23967 I 0.000
Cflo_07366--XP_001121752.1_APIME Camponotus floridanus Cflo_07366--XP_001121752.1_APIME I 0.000
CapteG82802 Capitella teleta CapteG82802 I 0.000
CapteG111555 Capitella teleta CapteG111555 I 0.000
CapteG148596 Capitella teleta CapteG148596 N 0.000
Cmyd_10015602 Chelonia mydas Cmyd_10015602 N 0.000
CLEC001579 Cimex lectularius CLEC001579 I 0.000
CGI_10003726 Crassostrea gigas CGI_10003726 I 0.000
CpipJ_CPIJ009525 Culex pipiens CpipJ_CPIJ009525 I 0.000
CPIJ009525 Culex quinquefasciatus CPIJ009525 I 0.000
CGOC_0000329701 Cylicostephanus goldi CGOC_0000329701 I 0.000
KGM_06490 Danaus plexippus KGM_06490 I 0.000
foxq2 Danio rerio ENSDARG00000071394 N 0.000
DAPPUDRAFT_50302 Daphnia pulex DAPPUDRAFT_50302 I 0.000
YQE_09099 Dendroctonus ponderosae YQE_09099 I 0.000
DICVIV_08747 Dictyocaulus viviparus DICVIV_08747 I 0.000
nDi.2.2.2.g05283 Dirofilaria immitis nDi.2.2.2.g05283 I 0.000
DME_0000296101 Dracunculus medinensis DME_0000296101 I 0.000
GF10343 Drosophila ananassae FBgn0087384 I 0.000
GG16435 Drosophila erecta FBgn0108666 I 0.000
GH24005 Drosophila grimshawi FBgn0131461 I 0.000
fd102C Drosophila melanogaster FBgn0039937 D 0.000
GI14084 Drosophila mojavensis FBgn0136838 I 0.000
GL15611 Drosophila persimilis FBgn0153215 I 0.000
GA10799 Drosophila pseudoobscura FBgn0070855 I 0.000
GM26767 Drosophila sechellia FBgn0181620 I 0.000
GJ15974 Drosophila virilis FBgn0203160 I 0.000
GK13662 Drosophila willistoni FBgn0215670 I 0.000
GE14501 Drosophila yakuba FBgn0232105 I 0.000
ECANG7_08418 Echinococcus canadensis ECANG7_08418 I 0.000
EEL_0000313101 Elaeophora elaphi EEL_0000313101 I 0.000
D915_07563 Fasciola hepatica D915_07563 I 0.000
GPUH_0002128801 Gongylonema pulchrum GPUH_0002128801 I 0.000
HCOI02176800 Haemonchus contortus HCOI02176800 I 0.000
HPLM_0001940801 Haemonchus placei HPLM_0001940801 I 0.000
Hsal_00505--XP_001121752.1_APIME Harpegnathos saltator Hsal_00505--XP_001121752.1_APIME I 0.000
HMEL012130 Heliconius melpomene HMEL012130 I 0.000
HPBE_0001940301 Heligmosomoides bakeri HPBE_0001940301 I 0.000
HelroG146879 Helobdella robusta HelroG146879 I 0.000
HelroG84905 Helobdella robusta HelroG84905 I 0.000
TTAC_0000212301 Hydatigera taeniaeformis TTAC_0000212301 I 0.000
XP_002159677.1 Hydra magnipapillata XP_002159677.1 I 0.000
HDID_0000955901 Hymenolepis diminuta HDID_0000955901 I 0.000
HmN_000125600 Hymenolepis microstoma HmN_000125600 I 0.000
HNAJ_0000218001 Hymenolepis nana HNAJ_0000218001 I 0.000
ISCW003951 Ixodes scapularis ISCW003951 I 0.000
ENSLACG00000010819 Latimeria chalumnae ENSLACG00000010819 N 0.000
LDEC001528 Leptinotarsa decemlineata LDEC001528 I 0.000
LotgiG79781 Lottia gigantea LotgiG79781 I 0.000
LCUP005975 Lucilia cuprina LCUP005975 I 0.000
LLOJ007413 Lutzomyia longipalpis LLOJ007413 I 0.000
MESCA005623 Megaselia scalaris MESCA005623 I 0.000
NV18839 Nasonia vitripennis NV18839 I 0.000
NECAME_04384 Necator americanus NECAME_04384 I 0.000
NEMVEDRAFT_v1g39596 Nematostella vectensis NEMVEDRAFT_v1g39596 I 0.000
NEMVEDRAFT_v1g125256 Nematostella vectensis NEMVEDRAFT_v1g125256 I 0.000
NEMVEDRAFT_v1g59063 Nematostella vectensis NEMVEDRAFT_v1g59063 I 0.000
NBR_0000095001 Nippostrongylus brasiliensis NBR_0000095001 I 0.000
Ocbimv22038677m.g Octopus bimaculoides Ocbimv22038677m.g I 0.000
Ocbimv22016417m.g Octopus bimaculoides Ocbimv22016417m.g N 0.000
OESDEN_02306 Oesophagostomum dentatum OESDEN_02306 I 0.000
nOo.2.0.1.g07936 Onchocerca ochengi nOo.2.0.1.g07936 I 0.000
WBGene00238063 Onchocerca volvulus WBGene00238063 I 0.000
Ogr12164 Ophisaurus gracilis Ogr12164 N 0.000
ENSONIG00000004794 Oreochromis niloticus ENSONIG00000004794 N 0.000
foxq2 Oryzias latipes ENSORLG00000004973 N 0.000
PHUM244390 Pediculus humanus PHUM244390 I 0.000
PPAI000826 Phlebotomus papatasi PPAI000826 I 0.000
ENSPFOG00000001440 Poecilia formosa ENSPFOG00000001440 N 0.000
Pvit_09831 Pogona vitticeps Pvit_09831 N 0.000
RPRC002475 Rhodnius prolixus RPRC002475 I 0.000
Sakowv30023329m.g Saccoglossus kowalevskii Sakowv30023329m.g I 0.000
SMU15004452 Schmidtea mediterranea SMU15004452 I 0.000
SBAD_0000682701 Soboliphyme baturini SBAD_0000682701 I 0.000
SINV17382 Solenopsis invicta SINV17382 I 0.000
L596_g8980 Steinernema carpocapsae L596_g8980 I 0.000
L889_g23699 Steinernema feltiae L889_g23699 I 0.000
L893_g32272 Steinernema glaseri L893_g32272 I 0.000
L898_g16488 Steinernema monticolum L898_g16488 I 0.000
L892_g5229 Steinernema scapterisci L892_g5229 I 0.000
SMAR012448 Strigamia maritima SMAR012448 I 0.000
SVUK_0000095001 Strongylus vulgaris SVUK_0000095001 I 0.000
tetur01g09690 Tetranychus urticae tetur01g09690 I 0.000
TCLT_0000158601 Thelazia callipaeda TCLT_0000158601 I 0.000
TCNE_0000717001 Toxocara canis TCNE_0000717001 I 0.000
TC004761 Tribolium castaneum TC004761 I 0.000
D917_06283 Trichinella nativa D917_06283 I 0.000
TMUE_s0045003300 Trichuris muris TMUE_s0045003300 I 0.000
D918_04073 Trichuris suis D918_04073 I 0.000
TTRE_0000002201 Trichuris trichiura TTRE_0000002201 I 0.000
WUBG_10187 Wuchereria bancrofti WUBG_10187 I 0.000
ENSXMAG00000012768 Xiphophorus maculatus ENSXMAG00000012768 N 0.000