SVUK_0001599301 (Strongylus vulgaris)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 SVUK_0001599301 T236626_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HESX1
M03187_2.00 		Homo sapiens
NHTAATTRVH
DBYAATTADN		 SELEX
Jolma et al.(2013)
HESX1_1 		0.679 0.417
HESX1
M03188_2.00 		Homo sapiens
NTAATTRGYAATTAD
HTAATTRCYAATTAN		 SELEX
Jolma et al.(2013)
HESX1_2 		0.679 0.417
HESX1
M05227_2.00 		Homo sapiens
DYAATTRV
BYAATTRH		 SELEX
Yin et al.(2017)
HESX1_FL_HT-SELEX 		0.679 0.417
HESX1
M05228_2.00 		Homo sapiens
NYAATTRD
HYAATTRN		 SELEX
Yin et al.(2017)
HESX1_FL_Methyl-HT-SELEX 		0.679 0.417
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
SVUK_0001599301-mRNA-1 Homeodomain 8 25
SVUK_0001599301-mRNA-1 Homeodomain 26 45

Links

Other Homeodomain family TFs
Other Strongylus vulgaris TFs

22 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACEP20913 Atta cephalotes ACEP20913 N 0.717
HESX1 Homo sapiens ENSG00000163666 D 0.679
NBR_0000705501 Nippostrongylus brasiliensis NBR_0000705501 I 0.668
PRRX2 Cavia porcellus ENSCPOG00000021821 I 0.663
HPBE_0000873701 Heligmosomoides bakeri HPBE_0000873701 I 0.658
Aan_R011917 Calypte anna Aan_R011917 I 0.653
HMEL016421 Heliconius melpomene HMEL016421 I 0.644
ENSP00000360811-D1 Bos grunniens ENSP00000360811-D1 I 0.643
MCINX008871 Melitaea cinxia MCINX008871 I 0.643
BGLB014161 Biomphalaria glabrata BGLB014161 I 0.637
PEQ_0001069001 Parascaris equorum PEQ_0001069001 I 0.636
BGLB009977 Biomphalaria glabrata BGLB009977 I 0.635
MCINX007054 Melitaea cinxia MCINX007054 I 0.627
CGI_10009720 Crassostrea gigas CGI_10009720 I 0.622
ENSPSIG00000014030 Pelodiscus sinensis ENSPSIG00000014030 I 0.621
Ogr03859 Ophisaurus gracilis Ogr03859 I 0.621
ENSFCAG00000029037 Felis catus ENSFCAG00000029037 I 0.617
LDEC008146 Leptinotarsa decemlineata LDEC008146 I 0.611
ENSTSYG00000014450 Tarsius syrichta ENSTSYG00000014450 I 0.609
OESDEN_01216 Oesophagostomum dentatum OESDEN_01216 I 0.608
tetur14g02510 Tetranychus urticae tetur14g02510 I 0.605
BGLB013824 Biomphalaria glabrata BGLB013824 I 0.601