CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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TCLT_0000802001
(
Thelazia callipaeda
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00046 (Homeobox)
IPR001356
TCLT_0000802001
T236784_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Dmbx1
M00441_2.00
Mus musculus
NTAATCYNN
NNRGATTAN
PBM
Berger et al.(2008)
Dmbx1_2277
0.634
0.561
DMBX1
M03236_2.00
Homo sapiens
NHTAATCCBN
NVGGATTADN
SELEX
Jolma et al.(2013)
DMBX1_1
0.634
0.561
DMBX1
M05383_2.00
Homo sapiens
NTAATCSN
NSGATTAN
SELEX
Yin et al.(2017)
DMBX1_eDBD_HT-SELEX
0.634
0.561
DMBX1
M05384_2.00
Homo sapiens
HTAATCCN
NGGATTAD
SELEX
Yin et al.(2017)
DMBX1_eDBD_Methyl-HT-SELEX
0.634
0.561
ceh-53
M00679_2.00
Caenorhabditis elegans
HTAATCYN
NRGATTAD
PBM
Narasimhan et al.(2015)
pTH10699
0.632
0.561
ceh-37
M00674_2.00
Caenorhabditis elegans
HTAATCYN
NRGATTAD
PBM
Narasimhan et al.(2015)
pTH10716
0.604
0.474
For this family, TFs with SR scores >
0.599
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
TCLT_0000802001-mRNA-1
Homeodomain
5
61
PRRRIAFTSEQLNRLEDAFQRCPYPKTEIRMKLALETQLSETRIQVWFKNRRAKYRK
Links
Other
Homeodomain
family TFs
Other
Thelazia callipaeda
TFs
161 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy