CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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TRE_0001559401
(
Trichobilharzia regenti
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00046 (Homeobox)
IPR001356
TRE_0001559401
T237011_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ARGFX
M05369_2.00
Homo sapiens
NYTAATTARH
DYTAATTARN
SELEX
Yin et al.(2017)
ARGFX_eDBD_HT-SELEX_1
0.605
0.281
ARGFX
M05370_2.00
Homo sapiens
HTAATYTAATTAR
YTAATTARATTAD
SELEX
Yin et al.(2017)
ARGFX_eDBD_HT-SELEX_2
0.605
0.281
ARGFX
M05371_2.00
Homo sapiens
NYTAATTAGH
DCTAATTARN
SELEX
Yin et al.(2017)
ARGFX_eDBD_Methyl-HT-SELEX_1
0.605
0.281
ARGFX
M05372_2.00
Homo sapiens
HTAATYTAATTAR
YTAATTARATTAD
SELEX
Yin et al.(2017)
ARGFX_eDBD_Methyl-HT-SELEX_2
0.605
0.281
For this family, TFs with SR scores >
0.599
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
TRE_0001559401-mRNA-1
Homeodomain
603
659
KRSRTRLSENQLSILRSYFDISNSPSDEKIREICVKTGLQEKVVKHWFRNTLFKERQ
Links
Other
Homeodomain
family TFs
Other
Trichobilharzia regenti
TFs
30 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy