CpipJ_CPIJ006390 (Culex pipiens)
Homeodomain,Paired box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox)
PF00292 (PAX)
IPR001356
IPR001523
CpipJ_CPIJ006390 T237209_2.00 Broad (2016-May-1)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
PAX6
M00342_2.00
Homo sapiens
NNNRCDMATTANNN

NNNTAATKHGYNNN
PBM
Barrera et al.(2016)
PAX6_REF
0.858 0.858
Pax6
M00540_2.00
Mus musculus
CBAATTAA

TTAATTVG
PBM
Berger et al.(2008)
Pax6_3838
0.858 0.858
PAX6
M03291_2.00
Homo sapiens
DTWYACGCWTGANTGMDYH

DRHKCANTCAWGCGTRWAH
SELEX
Jolma et al.(2013)
PAX6_1
0.858 0.858
ey
M03896_2.00
Drosophila melanogaster
CKAATTAD

HTAATTMG
SELEX
Nitta et al.(2015)
ey_1
0.858 0.858
ey
M03897_2.00
Drosophila melanogaster
HTAATCKMATTAD

HTAATKMGATTAD
SELEX
Nitta et al.(2015)
ey_2
0.858 0.858
ey
M03898_2.00
Drosophila melanogaster
WAAYYRRTTN

NAAYYRRTTW
SELEX
Nitta et al.(2015)
ey_3
0.858 0.858
PAX6
M05412_2.00
Homo sapiens
NYACGCHYSRNYRMNYN

NRNKYRNYSRDGCGTRN
SELEX
Yin et al.(2017)
PAX6_eDBD_HT-SELEX
0.858 0.858
PAX6
M05414_2.00
Homo sapiens
NYRCGCNYSRNYRVNYN

NRNBYRNYSRNGCGYRN
SELEX
Yin et al.(2017)
PAX6_FL_HT-SELEX
0.858 0.858
PAX6
M02689_2.00
Homo sapiens
TTYACGCWTSANTK

MANTSAWGCGTRAA
SELEX
Mathelier et al.(2014)
MA0069.1
0.858 0.858
PAX6
M09216_2.00
Homo sapiens
TYMYRCWTSRNT

ANYSAWGYRKRA
Misc
Kulakovskiy et al.(2013)
PAX6_HUMAN.H11MO.0.C
0.858 0.858
Pax6
M09217_2.00
Mus musculus
TYMYRCWTSRNT

ANYSAWGYRKRA
Misc
Kulakovskiy et al.(2013)
PAX6_MOUSE.H11MO.0.C
0.858 0.858
PAX6
M10806_2.00
Homo sapiens
NHNNTTYACGCWTSANTKVHH

DDBMANTSAWGCGTRAANNDN
Transfac
Matys et al.(2006)
V$PAX6_01
0.858 0.858
PAX6
M10807_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX6_Q2
0.858 0.858
PAX6
M05413_2.00
Homo sapiens
DYRCGCWTSRNYRMNYN

NRNKYRNYSAWGCGYRH
SELEX
Yin et al.(2017)
PAX6_eDBD_Methyl-HT-SELEX
0.858 0.858
PAX6
M05415_2.00
Homo sapiens
NYACGCHYSRNYRMHYN

NRDKYRNYSRDGCGTRN
SELEX
Yin et al.(2017)
PAX6_FL_Methyl-HT-SELEX
0.858 0.858
PAX6
M00335_2.00
Homo sapiens
BRNNNNNN

NNNNNNYV
PBM
Barrera et al.(2016)
PAX6_A79E
0.852 0.852
PAX6
M00336_2.00
Homo sapiens
RTGCACAC

GTGTGCAY
PBM
Barrera et al.(2016)
PAX6_F258S
0.852 0.852
PAX6
M00337_2.00
Homo sapiens
NMTAATTANNN

NNNTAATTAKN
PBM
Barrera et al.(2016)
PAX6_P118R
0.852 0.852
PAX6
M00338_2.00
Homo sapiens
WSGVRVDR

YHBYBCSW
PBM
Barrera et al.(2016)
PAX6_P68S
0.852 0.852
PAX6
M00339_2.00
Homo sapiens
NNNNSGKVGGHNN

NNDCCBMCSNNNN
PBM
Barrera et al.(2016)
PAX6_R128C
0.852 0.852
PAX6
M00340_2.00
Homo sapiens
NNNNNRN

NYNNNNN
PBM
Barrera et al.(2016)
PAX6_R242T
0.852 0.852
PAX6
M00341_2.00
Homo sapiens
BTSCCCSGSC

GSCSGGGSAV
PBM
Barrera et al.(2016)
PAX6_R26G
0.852 0.852
PAX6
M00343_2.00
Homo sapiens
NNNNCCCVKCNBN

NVNGMBGGGNNNN
PBM
Barrera et al.(2016)
PAX6_S119R
0.852 0.852
PAX6
M00344_2.00
Homo sapiens
NNMSASGBYNNN

NNNRVCSTSKNN
PBM
Barrera et al.(2016)
PAX6_V126D
0.852 0.852
toy
M03899_2.00
Drosophila melanogaster
TTYACGCWTGASTGMACAN

NTGTKCASTCAWGCGTRAA
SELEX
Nitta et al.(2015)
toy_1
0.801 0.801
toy
M03900_2.00
Drosophila melanogaster
NTYACGCWTSAVTGMRCNN

NNGYKCABTSAWGCGTRAN
SELEX
Nitta et al.(2015)
toy_2
0.801 0.801
toy
M03901_2.00
Drosophila melanogaster
VATTANBHAYGSWYSRN

NYSRWSCRTDVNTAATB
SELEX
Nitta et al.(2015)
toy_3
0.801 0.801
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
CpipJ_CPIJ006390-RA Paired box 62 180
CpipJ_CPIJ006390-RA Homeodomain 272 328

Links

Other Homeodomain,Paired box family TFs
Other Culex pipiens TFs

186 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Aan_R013832 Calypte anna Aan_R013832 I 0.000
AARA004020 Anopheles arabiensis AARA004020 I 0.000
AATE014785 Anopheles atroparvus AATE014785 I 0.000
ACEP18972 Atta cephalotes ACEP18972 I 0.000
ADIR005096 Anopheles dirus ADIR005096 I 0.000
AEPI009051 Anopheles epiroticus AEPI009051 I 0.000
AFAF016726 Anopheles farauti AFAF016726 I 0.000
Afo_R000177 Aptenodytes forsteri Afo_R000177 I 0.000
Afo_R007655 Aptenodytes forsteri Afo_R007655 I 0.000
AFUN000829 Anopheles funestus AFUN000829 I 0.000
AGAP009749 Anopheles gambiae AGAP009749 I 0.000
Alligator_sinensis_CCG003592.1 Alligator sinensis Alligator_sinensis_CCG003592.1 I 0.000
Alligator_sinensis_CCG020663.1 Alligator sinensis Alligator_sinensis_CCG020663.1 I 0.000
AQUA011339 Anopheles quadriannulatus AQUA011339 I 0.000
arnt Gasterosteus aculeatus ENSGACG00000011686 I 0.000
ARNT Gallus gallus ENSGALG00000000751 I 0.000
ARNT Homo sapiens ENSG00000143437 D 0.000
ARNT Cavia porcellus ENSCPOG00000014578 I 0.000
ARNT Felis catus ENSFCAG00000003644 I 0.000
ARNT Pan troglodytes ENSPTRG00000001266 I 0.000
ARNT Echinops telfairi ENSETEG00000001280 I 0.000
ARNT Erinaceus europaeus ENSEEUG00000007500 I 0.000
Arnt Mus musculus ENSMUSG00000015522 D 0.000
ARNT Gorilla gorilla ENSGGOG00000015383 I 0.000
ARNT Monodelphis domestica ENSMODG00000018814 I 0.000
ARNT Ornithorhynchus anatinus ENSOANG00000004580 I 0.000
ARNT Macaca mulatta ENSMMUG00000000541 I 0.000
ARNT Myotis lucifugus ENSMLUG00000003502 I 0.000
ARNT Microcebus murinus ENSMICG00000005872 I 0.000
ARNT Oryctolagus cuniculus ENSOCUG00000013582 I 0.000
ARNT Meleagris gallopavo ENSMGAG00000000943 I 0.000
ARNT Otolemur garnettii ENSOGAG00000004523 I 0.000
ARNT Ochotona princeps ENSOPRG00000010374 I 0.000
ARNT Loxodonta africana ENSLAFG00000011282 I 0.000
ARNT Oryzias latipes ENSORLG00000010551 I 0.000
ARNT Procavia capensis ENSPCAG00000008485 I 0.000
ARNT Equus caballus ENSECAG00000009602 I 0.000
ARNT Pteropus vampyrus ENSPVAG00000004354 I 0.000
arnt Ciona intestinalis ENSCING00000008102 I 0.000
ARNT Choloepus hoffmanni ENSCHOG00000010045 I 0.000
ARNT Canis familiaris ENSCAFG00000012149 I 0.000
ARNT Taeniopygia guttata ENSTGUG00000004647 I 0.000
ARNT Bos taurus ENSBTAG00000021037 I 0.000
ARNT Takifugu rubripes ENSTRUG00000014504 I 0.000
ARNT Tetraodon nigroviridis ENSTNIG00000008064 I 0.000
ARNT Anolis carolinensis ENSACAG00000011254 I 0.000
ARNT Vicugna pacos ENSVPAG00000005439 I 0.000
ARNT Callithrix jacchus ENSCJAG00000006839 I 0.000
ARNT Sus scrofa ENSSSCG00000006646 I 0.000
ARNT Tursiops truncatus ENSTTRG00000007388 I 0.000
ARNT Dasypus novemcinctus ENSDNOG00000005093 I 0.000
Arnt Rattus norvegicus ENSRNOG00000031174 I 0.000
arnt Danio rerio ENSDARG00000021855 I 0.000
ARNT Sorex araneus ENSSARG00000005490 I 0.000
arnt Xenopus tropicalis XB-GENE-855450 I 0.000
arnt.L Xenopus laevis XB-GENE-17346408 I 0.000
arnt.S Xenopus laevis XB-GENE-866594 I 0.000
ARNT2 Pan troglodytes ENSPTRG00000007363 I 0.000
Arnt2 Mus musculus ENSMUSG00000015709 D 0.000
ARNT2 Tursiops truncatus ENSTTRG00000003099 I 0.000
arnt2 Danio rerio ENSDARG00000103697 I 0.000
ARNT2 Sorex araneus ENSSARG00000012144 I 0.000
arnt2 Takifugu rubripes ENSTRUG00000000793 I 0.000
Arnt2 Rattus norvegicus ENSRNOG00000013017 D 0.000
ARNT2 Oryctolagus cuniculus ENSOCUG00000017566 I 0.000
ARNT2 Taeniopygia guttata ENSTGUG00000008015 I 0.000
ARNT2 Otolemur garnettii ENSOGAG00000011634 I 0.000
ARNT2 Tupaia belangeri ENSTBEG00000015444 I 0.000
arnt2 Xenopus tropicalis XB-GENE-487404 I 0.000
ARNT2 Pteropus vampyrus ENSPVAG00000003755 I 0.000
ARNT2 Equus caballus ENSECAG00000015748 I 0.000
ARNT2 Loxodonta africana ENSLAFG00000021559 I 0.000
ARNT2 Choloepus hoffmanni ENSCHOG00000012285 I 0.000
ARNT2 Cavia porcellus ENSCPOG00000012997 I 0.000
ARNT2 Anolis carolinensis ENSACAG00000011731 I 0.000
ARNT2 Callithrix jacchus ENSCJAG00000007640 I 0.000
ARNT2 Gorilla gorilla ENSGGOG00000012245 I 0.000
ARNT2 Meleagris gallopavo ENSMGAG00000008186 I 0.000
ARNT2 Microcebus murinus ENSMICG00000015661 I 0.000
ARNT2 Dasypus novemcinctus ENSDNOG00000046568 I 0.000
ARNT2 Gallus gallus ENSGALG00000006445 I 0.000
ARNT2 Macaca mulatta ENSMMUG00000011566 I 0.000
arnt2 Gasterosteus aculeatus ENSGACG00000013947 I 0.000
ARNT2 Homo sapiens ENSG00000172379 D 0.000
ARNT2 Monodelphis domestica ENSMODG00000019416 I 0.000
ARNT2 Felis catus ENSFCAG00000012936 I 0.000
ARNT2 Canis familiaris ENSCAFG00000013922 I 0.000
arnt2.L Xenopus laevis XB-GENE-17338344 I 0.000
arnt2.S Xenopus laevis XB-GENE-487408 I 0.000
A_03374 Schistosoma haematobium A_03374 I 0.000
BGIBMGA003472 Bombyx mori BGIBMGA003472 I 0.000
BGLB009342 Biomphalaria glabrata BGLB009342 I 0.000
Brh_R012646 Buceros rhinoceros Brh_R012646 I 0.000
CapteG88605 Capitella teleta CapteG88605 I 0.000
CapteG88932 Capitella teleta CapteG88932 I 0.000
Cflo_03170--XP_394708.3_APIME Camponotus floridanus Cflo_03170--XP_394708.3_APIME I 0.000
CGI_10017200 Crassostrea gigas CGI_10017200 I 0.000
CLEC002917 Cimex lectularius CLEC002917 I 0.000
CLEC012864 Cimex lectularius CLEC012864 I 0.000
Cmyd_10007604 Chelonia mydas Cmyd_10007604 I 0.000
Cmyd_10021146 Chelonia mydas Cmyd_10021146 I 0.000
CPIJ014773 Culex quinquefasciatus CPIJ014773 I 0.000
CpipJ_CPIJ014773 Culex pipiens CpipJ_CPIJ014773 I 0.000
D915_11353 Fasciola hepatica D915_11353 I 0.000
DAPPUDRAFT_309730 Daphnia pulex DAPPUDRAFT_309730 I 0.000
ECANG7_07095 Echinococcus canadensis ECANG7_07095 I 0.000
ECPE_0000540401 Echinostoma caproni ECPE_0000540401 I 0.000
ENSAMEG00000001200 Ailuropoda melanoleuca ENSAMEG00000001200 I 0.000
ENSAMEG00000006241 Ailuropoda melanoleuca ENSAMEG00000006241 I 0.000
ENSAMXG00000012473 Astyanax mexicanus ENSAMXG00000012473 I 0.000
ENSAMXG00000019978 Astyanax mexicanus ENSAMXG00000019978 I 0.000
ENSAPLG00000010837 Anas platyrhynchos ENSAPLG00000010837 I 0.000
ENSAPLG00000013397 Anas platyrhynchos ENSAPLG00000013397 I 0.000
ENSBTAG00000047587 Bos taurus ENSBTAG00000047587 I 0.000
ENSBTAP00000028023-D1 Bos grunniens ENSBTAP00000028023-D1 I 0.000
ENSCSAG00000015083 Chlorocebus sabaeus ENSCSAG00000015083 I 0.000
ENSCSAG00000018038 Chlorocebus sabaeus ENSCSAG00000018038 I 0.000
ENSCSAVG00000010893 Ciona savignyi ENSCSAVG00000010893 I 0.000
ENSDORG00000004181 Dipodomys ordii ENSDORG00000004181 I 0.000
ENSDORG00000014121 Dipodomys ordii ENSDORG00000014121 I 0.000
ENSFALG00000005800 Ficedula albicollis ENSFALG00000005800 I 0.000
ENSGMOG00000006058 Gadus morhua ENSGMOG00000006058 I 0.000
ENSLACG00000008884 Latimeria chalumnae ENSLACG00000008884 I 0.000
ENSLACG00000013911 Latimeria chalumnae ENSLACG00000013911 I 0.000
ENSLOCG00000012783 Lepisosteus oculatus ENSLOCG00000012783 I 0.000
ENSMEUG00000003050 Macropus eugenii ENSMEUG00000003050 I 0.000
ENSMEUG00000008354 Macropus eugenii ENSMEUG00000008354 I 0.000
ENSMPUG00000004365 Mustela putorius furo ENSMPUG00000004365 I 0.000
ENSMPUG00000015447 Mustela putorius furo ENSMPUG00000015447 I 0.000
ENSNLEG00000008951 Nomascus leucogenys ENSNLEG00000008951 I 0.000
ENSNLEG00000009971 Nomascus leucogenys ENSNLEG00000009971 I 0.000
ENSOANG00000028789 Ornithorhynchus anatinus ENSOANG00000028789 I 0.000
ENSOARG00000015391 Ovis aries ENSOARG00000015391 I 0.000
ENSOARG00000020870 Ovis aries ENSOARG00000020870 I 0.000
ENSONIG00000001978 Oreochromis niloticus ENSONIG00000001978 I 0.000
ENSONIG00000006431 Oreochromis niloticus ENSONIG00000006431 I 0.000
ENSORLG00000019479 Oryzias latipes ENSORLG00000019479 I 0.000
ENSP00000307479 Macaca fascicularis ENSP00000307479 I 0.000
ENSP00000307479-D1 Bos grunniens ENSP00000307479-D1 I 0.000
ENSP00000351407 Macaca fascicularis ENSP00000351407 I 0.000
ENSPANG00000015681 Papio anubis ENSPANG00000015681 I 0.000
ENSPANG00000016773 Papio anubis ENSPANG00000016773 I 0.000
ENSPFOG00000000603 Poecilia formosa ENSPFOG00000000603 I 0.000
ENSPFOG00000005237 Poecilia formosa ENSPFOG00000005237 I 0.000
ENSPPYG00000000888 Pongo abelii ENSPPYG00000000888 I 0.000
ENSPPYG00000006714 Pongo abelii ENSPPYG00000006714 I 0.000
ENSPSIG00000008480 Pelodiscus sinensis ENSPSIG00000008480 I 0.000
ENSPSIG00000010366 Pelodiscus sinensis ENSPSIG00000010366 I 0.000
ENSSHAG00000012227 Sarcophilus harrisii ENSSHAG00000012227 I 0.000
ENSSHAG00000012937 Sarcophilus harrisii ENSSHAG00000012937 I 0.000
ENSSSCG00000001781 Sus scrofa ENSSSCG00000001781 I 0.000
ENSSTOG00000013876 Ictidomys tridecemlineatus ENSSTOG00000013876 I 0.000
ENSTNIG00000004348 Tetraodon nigroviridis ENSTNIG00000004348 I 0.000
ENSTSYG00000001890 Tarsius syrichta ENSTSYG00000001890 I 0.000
ENSTSYG00000006074 Tarsius syrichta ENSTSYG00000006074 I 0.000
ENSXMAG00000016545 Xiphophorus maculatus ENSXMAG00000016545 I 0.000
estExt_fgenesh2_pg.C_1460068 Branchiostoma floridae estExt_fgenesh2_pg.C_1460068 I 0.000
GA11313 Drosophila pseudoobscura FBgn0071367 I 0.000
GD20825 Drosophila simulans FBgn0192287 I 0.000
GE24803 Drosophila yakuba FBgn0241904 I 0.000
GF18433 Drosophila ananassae FBgn0095451 I 0.000
Gfo_R004222 Geospiza fortis Gfo_R004222 I 0.000
Gfo_R011690 Geospiza fortis Gfo_R011690 I 0.000
GG17399 Drosophila erecta FBgn0109625 I 0.000
GH18221 Drosophila grimshawi FBgn0125689 I 0.000
GI10175 Drosophila mojavensis FBgn0132941 I 0.000
GJ10876 Drosophila virilis FBgn0198144 I 0.000
GK11420 Drosophila willistoni FBgn0213431 I 0.000
GL12493 Drosophila persimilis FBgn0150099 I 0.000
GM26289 Drosophila sechellia FBgn0181143 I 0.000
HHAL008564-PA Halyomorpha halys HHAL008564-PA I 0.000
HHAL009348-PA Halyomorpha halys HHAL009348-PA I 0.000
HMEL013329 Heliconius melpomene HMEL013329 I 0.000
Hsal_13684--XP_394708.3_APIME Harpegnathos saltator Hsal_13684--XP_394708.3_APIME I 0.000
ISCW023999 Ixodes scapularis ISCW023999 I 0.000
KGM_04621 Danaus plexippus KGM_04621 I 0.000
L798_12084 Zootermopsis nevadensis L798_12084 I 0.000
LCUP007387 Lucilia cuprina LCUP007387 I 0.000
LDEC004670 Leptinotarsa decemlineata LDEC004670 I 0.000
LLOJ003291 Lutzomyia longipalpis LLOJ003291 I 0.000
MCINX011636 Melitaea cinxia MCINX011636 I 0.000
MCOS_0000389001 Mesocestoides corti MCOS_0000389001 I 0.000
MDOA015409 Musca domestica MDOA015409 I 0.000
Myotis_brandtii_ARNT2_10004786 Myotis brandtii Myotis_brandtii_ARNT2_10004786 I 0.000
Myotis_brandtii_ARNT_10031836 Myotis brandtii Myotis_brandtii_ARNT_10031836 I 0.000
NV11924 Nasonia vitripennis NV11924 I 0.000
Ocbimv22015061m.g Octopus bimaculoides Ocbimv22015061m.g I 0.000
Ogr07219 Ophisaurus gracilis Ogr07219 I 0.000
Ogr13046 Ophisaurus gracilis Ogr13046 I 0.000
PHUM505970 Pediculus humanus PHUM505970 I 0.000
Pvit_04978 Pogona vitticeps Pvit_04978 I 0.000
Pvit_13617 Pogona vitticeps Pvit_13617 I 0.000
PXEA_0001988401 Protopolystoma xenopodis PXEA_0001988401 I 0.000
RPRC004351 Rhodnius prolixus RPRC004351 I 0.000
Sakowv30011795m.g Saccoglossus kowalevskii Sakowv30011795m.g I 0.000
SINV17691 Solenopsis invicta SINV17691 I 0.000
Smp_123420 Schistosoma mansoni Smp_123420 I 0.000
SMTD_0000012501 Schistosoma mattheei SMTD_0000012501 I 0.000
SMU15010696 Schmidtea mediterranea SMU15010696 I 0.000
SPU_000129 Strongylocentrotus purpuratus SPU_000129 I 0.000
T265_03519 Opisthorchis viverrini T265_03519 I 0.000
Tal_R007034 Tyto alba Tal_R007034 I 0.000
Tal_R013361 Tyto alba Tal_R013361 I 0.000
TC004710 Tribolium castaneum TC004710 I 0.000
tetur01g08330 Tetranychus urticae tetur01g08330 I 0.000
tgo Drosophila melanogaster FBgn0264075 D 0.000
TRE_0001250901 Trichobilharzia regenti TRE_0001250901 I 0.000
YQE_09240 Dendroctonus ponderosae YQE_09240 I 0.000