CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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ENSAPLG00000005016
(
Anas platyrhynchos
)
Homeodomain,Paired box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00046 (Homeobox)
PF00292 (PAX)
IPR001356
IPR001523
ENSAPLG00000005016
T237272_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Pax7
M00541_2.00
Mus musculus
NNVATTWN
NWAATBNN
PBM
Berger et al.(2008)
Pax7_3783
0.860
0.860
PAX7
M03292_2.00
Homo sapiens
WAATYRATTA
TAATYRATTW
SELEX
Jolma et al.(2013)
PAX7_1
0.860
0.860
PAX7
M03293_2.00
Homo sapiens
TAATYGATTA
TAATCRATTA
SELEX
Jolma et al.(2013)
PAX7_2
0.860
0.860
PAX7
M05416_2.00
Homo sapiens
NDSCGTGACGAATYR
YRATTCGTCACGSHN
SELEX
Yin et al.(2017)
PAX7_eDBD_HT-SELEX_1
0.860
0.860
PAX7
M05417_2.00
Homo sapiens
NSGTCACGSHWRTTAN
NTAAYWDSCGTGACSN
SELEX
Yin et al.(2017)
PAX7_eDBD_HT-SELEX_2
0.860
0.860
PAX7
M05418_2.00
Homo sapiens
NNAATCRATTWN
NWAATYGATTNN
SELEX
Yin et al.(2017)
PAX7_eDBD_HT-SELEX_3
0.860
0.860
PAX7
M05422_2.00
Homo sapiens
BVATTMGTCACGSHN
NDSCGTGACKAATBV
SELEX
Yin et al.(2017)
PAX7_FL_HT-SELEX_1
0.860
0.860
PAX7
M05423_2.00
Homo sapiens
NSGTCACGSYWATTAN
NTAATWRSCGTGACSN
SELEX
Yin et al.(2017)
PAX7_FL_HT-SELEX_2
0.860
0.860
PAX7
M05424_2.00
Homo sapiens
NTAATYGATTAN
NTAATCRATTAN
SELEX
Yin et al.(2017)
PAX7_FL_HT-SELEX_3
0.860
0.860
PAX7
M05874_2.00
Homo sapiens
ATTMGTYACGSHN
NDSCGTRACKAAT
SMiLE-seq
Isakova et al.(2017)
PAX7
0.860
0.860
Pax7
M09586_2.00
Mus musculus
NNNNNYAATTDNNHAATTAN
NTAATTDNNHAATTRNNNNN
Misc
Heinz et al.(2010)
Myoblast-Pax7_GSE25064_1
0.860
0.860
Pax7
M09587_2.00
Mus musculus
DTAATYDGATTA
TAATCHRATTAH
Misc
Heinz et al.(2010)
Myoblast-Pax7_GSE25064_2
0.860
0.860
Pax7
M09588_2.00
Mus musculus
TAATTGATTW
WAATCAATTA
Misc
Heinz et al.(2010)
Myoblast-Pax7_GSE25064_3
0.860
0.860
PAX7
M05419_2.00
Homo sapiens
NVATTVGTCRCGSYN
NRSCGYGACBAATBN
SELEX
Yin et al.(2017)
PAX7_eDBD_Methyl-HT-SELEX_1
0.860
0.860
PAX7
M05420_2.00
Homo sapiens
NNGTCACGSHHRTTAN
NTAAYDDSCGTGACNN
SELEX
Yin et al.(2017)
PAX7_eDBD_Methyl-HT-SELEX_2
0.860
0.860
PAX7
M05421_2.00
Homo sapiens
NNAATCRATTWN
NWAATYGATTNN
SELEX
Yin et al.(2017)
PAX7_eDBD_Methyl-HT-SELEX_3
0.860
0.860
PAX7
M05425_2.00
Homo sapiens
YRATTMGTCACGSHN
NDSCGTGACKAATYR
SELEX
Yin et al.(2017)
PAX7_FL_Methyl-HT-SELEX_1
0.860
0.860
PAX7
M05426_2.00
Homo sapiens
NSGTCACGSYWATTAN
NTAATWRSCGTGACSN
SELEX
Yin et al.(2017)
PAX7_FL_Methyl-HT-SELEX_2
0.860
0.860
PAX7
M05427_2.00
Homo sapiens
NTAATYGATTAN
NTAATCRATTAN
SELEX
Yin et al.(2017)
PAX7_FL_Methyl-HT-SELEX_3
0.860
0.860
PAX3
M00358_2.00
Homo sapiens
NRTNNNN
NNNNAYN
PBM
Barrera et al.(2016)
PAX3_REF
0.816
0.816
PAX3
M03297_2.00
Homo sapiens
TAATYRATTA
TAATYRATTA
SELEX
Jolma et al.(2013)
PAX3_1
0.816
0.816
PAX3
M03885_2.00
Homo sapiens
NNTAATYGATTANN
NNTAATCRATTANN
SELEX
Nitta et al.(2015)
PAX3_1
0.816
0.816
PAX3
M03886_2.00
Homo sapiens
RATTMGTCACGST
ASCGTGACKAATY
SELEX
Nitta et al.(2015)
PAX3_2
0.816
0.816
PAX3
M05438_2.00
Homo sapiens
NSGTCACGSHHATTAN
NTAATDDSCGTGACSN
SELEX
Yin et al.(2017)
PAX3_eDBD_HT-SELEX_1
0.816
0.816
PAX3
M05439_2.00
Homo sapiens
NDAATCRATTMN
NKAATYGATTHN
SELEX
Yin et al.(2017)
PAX3_eDBD_HT-SELEX_2
0.816
0.816
PAX3
M05440_2.00
Homo sapiens
NBRATTMGTCACGSHN
NDSCGTGACKAATYVN
SELEX
Yin et al.(2017)
PAX3_eDBD_HT-SELEX_3
0.816
0.816
PAX3
M09585_2.00
Homo sapiens
WSYRTGACWAATBNN
NNVATTWGTCAYRSW
Misc
Heinz et al.(2010)
Rh4-PAX3_FKHR_GSE19063
0.816
0.816
PAX3
M10816_2.00
Homo sapiens
TCGTCACRCHYHM
KDRDGYGTGACGA
Transfac
Matys et al.(2006)
V$PAX3_01
0.816
0.816
PAX3
M10817_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX3_B
0.816
0.816
PAX3
M00359_2.00
Homo sapiens
NTAATYRV
BYRATTAN
PBM
Barrera et al.(2016)
PAX3_Y90H
0.816
0.816
PAX3
M05441_2.00
Homo sapiens
NNGTCACGSHWRTTAN
NTAAYWDSCGTGACNN
SELEX
Yin et al.(2017)
PAX3_eDBD_Methyl-HT-SELEX_1
0.816
0.816
PAX3
M05442_2.00
Homo sapiens
NWAATCRATTAN
NTAATYGATTWN
SELEX
Yin et al.(2017)
PAX3_eDBD_Methyl-HT-SELEX_2
0.816
0.816
PAX3
M05443_2.00
Homo sapiens
NNRATTVGTCRCGSHN
NDSCGYGACBAATYNN
SELEX
Yin et al.(2017)
PAX3_eDBD_Methyl-HT-SELEX_3
0.816
0.816
PAX3
M00352_2.00
Homo sapiens
VNTAATYR
YRATTANB
PBM
Barrera et al.(2016)
PAX3_G48R
0.810
0.810
PAX3
M00353_2.00
Homo sapiens
NNNNRTNNN
NNNAYNNNN
PBM
Barrera et al.(2016)
PAX3_N47H
0.810
0.810
PAX3
M00354_2.00
Homo sapiens
NNNRYNN
NNRYNNN
PBM
Barrera et al.(2016)
PAX3_N47K
0.810
0.810
PAX3
M00355_2.00
Homo sapiens
NNNATNWNN
NNWNATNNN
PBM
Barrera et al.(2016)
PAX3_P50L
0.810
0.810
PAX3
M00356_2.00
Homo sapiens
NNKWCAYDDWN
NWHHRTGWMNN
PBM
Barrera et al.(2016)
PAX3_R270C
0.810
0.810
PAX3
M00357_2.00
Homo sapiens
NNNATNWNN
NNWNATNNN
PBM
Barrera et al.(2016)
PAX3_R56L
0.810
0.810
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSAPLP00000004630
Paired box
29
157
VSTPLGQGRVNGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCIPGILGRGAVEGSLQPPCAGRGPQKQVATPDVEKKIEEYKRENPGMFSWEIRDRLLKDGHCDRSTVPSAGEASPVSSISRVLR
ENSAPLP00000004630
Homeodomain
217
273
RRSRTTFTAEQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRK
Links
Other
Homeodomain,Paired box
family TFs
Other
Anas platyrhynchos
TFs
156 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
ENSFALG00000012312
Ficedula albicollis
ENSFALG00000012312
I
1.000
Brh_R006623
Buceros rhinoceros
Brh_R006623
I
0.934
PAX3
Pteropus vampyrus
ENSPVAG00000007498
I
0.927
PAX7
Oryctolagus cuniculus
ENSOCUG00000006146
I
0.890
ENSPANG00000015169
Papio anubis
ENSPANG00000015169
I
0.890
ENSCSAG00000000870
Chlorocebus sabaeus
ENSCSAG00000000870
I
0.855
PAX7
Meleagris gallopavo
ENSMGAG00000005870
I
0.855
PAX7
Otolemur garnettii
ENSOGAG00000016376
I
0.846
PAX7
Loxodonta africana
ENSLAFG00000011762
I
0.846
PAX7
Pan troglodytes
ENSPTRG00000000253
I
0.846
PAX7
Dasypus novemcinctus
ENSDNOG00000007584
I
0.846
PAX7
Homo sapiens
ENSG00000009709
D
0.846
PAX7
Macaca mulatta
ENSMMUG00000017444
I
0.846
PAX7
Gorilla gorilla
ENSGGOG00000004213
I
0.846
ENSMEUG00000001822
Macropus eugenii
ENSMEUG00000001822
I
0.846
ENSGALG00000003782
Gallus gallus
ENSGALG00000003782
I
0.846
ENSMPUG00000016202
Mustela putorius furo
ENSMPUG00000016202
I
0.846
Pax7
Rattus norvegicus
ENSRNOG00000018739
I
0.846
ENSNLEG00000007812
Nomascus leucogenys
ENSNLEG00000007812
I
0.846
Pax7
Mus musculus
ENSMUSG00000028736
D
0.846
PAX7
Felis catus
ENSFCAG00000008765
I
0.846
ENSPPYG00000001801
Pongo abelii
ENSPPYG00000001801
I
0.846
PAX7
Bos taurus
ENSBTAG00000014967
I
0.846
PAX7
Canis familiaris
ENSCAFG00000015539
I
0.846
PAX7
Cavia porcellus
ENSCPOG00000014574
I
0.846
Aan_R006049
Calypte anna
Aan_R006049
I
0.846
ENSAMEG00000017082
Ailuropoda melanoleuca
ENSAMEG00000017082
I
0.846
Afo_R012987
Aptenodytes forsteri
Afo_R012987
I
0.846
PAX7
Tursiops truncatus
ENSTTRG00000004465
I
0.846
Pvit_06262
Pogona vitticeps
Pvit_06262
I
0.846
ENSP00000364524
Macaca fascicularis
ENSP00000364524
I
0.846
ENSSTOG00000020868
Ictidomys tridecemlineatus
ENSSTOG00000020868
I
0.846
ENSBTAP00000019924-D1
Bos grunniens
ENSBTAP00000019924-D1
I
0.846
ENSSHAG00000005424
Sarcophilus harrisii
ENSSHAG00000005424
I
0.846
PAX7
Callithrix jacchus
ENSCJAG00000007521
I
0.846
pax7.L
Xenopus laevis
XB-GENE-865678
I
0.841
Myotis_brandtii_Pax7_10009014
Myotis brandtii
Myotis_brandtii_Pax7_10009014
I
0.841
pax7
Xenopus tropicalis
XB-GENE-487140
I
0.841
pax7a
Gasterosteus aculeatus
ENSGACG00000012890
I
0.838
PAX3
Oryctolagus cuniculus
ENSOCUG00000017507
I
0.838
PAX7
Microcebus murinus
ENSMICG00000016256
I
0.838
ENSLACG00000019159
Latimeria chalumnae
ENSLACG00000019159
I
0.835
ENSOARG00000010587
Ovis aries
ENSOARG00000010587
I
0.835
ENSLOCG00000003864
Lepisosteus oculatus
ENSLOCG00000003864
I
0.830
ENSPFOG00000013988
Poecilia formosa
ENSPFOG00000013988
I
0.830
PAX7
Oryzias latipes
ENSORLG00000004269
I
0.830
pax7a
Tetraodon nigroviridis
ENSTNIG00000014797
I
0.830
PAX7
Ochotona princeps
ENSOPRG00000007352
I
0.830
pax7a
Takifugu rubripes
ENSTRUG00000015245
I
0.830
ENSONIG00000014283
Oreochromis niloticus
ENSONIG00000014283
I
0.830
PAX7
Gasterosteus aculeatus
ENSGACG00000001703
I
0.830
ENSAMXG00000024811
Astyanax mexicanus
ENSAMXG00000024811
I
0.830
pax7b
Danio rerio
ENSDARG00000070818
I
0.830
ENSGMOG00000001549
Gadus morhua
ENSGMOG00000001549
I
0.830
pax7a
Danio rerio
ENSDARG00000100398
I
0.824
ENSAMXG00000003799
Astyanax mexicanus
ENSAMXG00000003799
I
0.824
ENSONIG00000001596
Oreochromis niloticus
ENSONIG00000001596
I
0.819
ENSLACG00000006342
Latimeria chalumnae
ENSLACG00000006342
I
0.816
PAX7
Sorex araneus
ENSSARG00000008062
I
0.814
PAX3
Ornithorhynchus anatinus
ENSOANG00000007096
I
0.808
PAX3
Procavia capensis
ENSPCAG00000000403
I
0.807
PAX3
Takifugu rubripes
ENSTRUG00000013444
I
0.804
Gfo_R010293
Geospiza fortis
Gfo_R010293
I
0.804
PAX3
Pan troglodytes
ENSPTRG00000012969
I
0.802
Pax3
Rattus norvegicus
ENSRNOG00000013670
I
0.802
ENSPSIG00000005535
Pelodiscus sinensis
ENSPSIG00000005535
I
0.802
ENSCSAG00000007841
Chlorocebus sabaeus
ENSCSAG00000007841
I
0.802
ENSPPYG00000013219
Pongo abelii
ENSPPYG00000013219
I
0.802
fgenesh2_kg.scaffold_259000002
Branchiostoma floridae
fgenesh2_kg.scaffold_259000002
I
0.802
fgenesh2_kg.scaffold_211000002
Branchiostoma floridae
fgenesh2_kg.scaffold_211000002
I
0.802
Pvit_18803
Pogona vitticeps
Pvit_18803
I
0.802
ENSP00000375921
Macaca fascicularis
ENSP00000375921
I
0.802
PAX3
Cavia porcellus
ENSCPOG00000006276
I
0.802
ENSPANG00000008818
Papio anubis
ENSPANG00000008818
I
0.802
ENSAMEG00000007444
Ailuropoda melanoleuca
ENSAMEG00000007444
I
0.802
PAX3
Canis familiaris
ENSCAFG00000016041
I
0.802
PAX3
Bos taurus
ENSBTAG00000009950
I
0.802
PAX3
Tupaia belangeri
ENSTBEG00000010268
I
0.802
PAX3
Anolis carolinensis
ENSACAG00000004981
I
0.802
ENSSHAG00000016542
Sarcophilus harrisii
ENSSHAG00000016542
I
0.802
PAX3
Loxodonta africana
ENSLAFG00000008041
I
0.802
PAX3
Callithrix jacchus
ENSCJAG00000012088
I
0.802
ENSBTAP00000013131-D1
Bos grunniens
ENSBTAP00000013131-D1
I
0.802
ENSSTOG00000008650
Ictidomys tridecemlineatus
ENSSTOG00000008650
I
0.802
Pax3
Mus musculus
ENSMUSG00000004872
I
0.802
ENSMPUG00000016673
Mustela putorius furo
ENSMPUG00000016673
I
0.802
PAX3
Homo sapiens
ENSG00000135903
D
0.802
ENSNLEG00000009611
Nomascus leucogenys
ENSNLEG00000009611
I
0.802
PAX3
Otolemur garnettii
ENSOGAG00000001304
I
0.802
PAX3
Erinaceus europaeus
ENSEEUG00000012346
I
0.802
PAX3
Monodelphis domestica
ENSMODG00000021190
I
0.802
PAX3
Equus caballus
ENSECAG00000014549
I
0.802
PAX3
Microcebus murinus
ENSMICG00000000336
I
0.802
ENSMEUG00000013628
Macropus eugenii
ENSMEUG00000013628
I
0.802
PAX3
Felis catus
ENSFCAG00000018967
I
0.802
PAX3
Gorilla gorilla
ENSGGOG00000015636
I
0.802
PAX3
Macaca mulatta
ENSMMUG00000020409
I
0.802
PAX3
Myotis lucifugus
ENSMLUG00000014155
I
0.802
PAX3
Dasypus novemcinctus
ENSDNOG00000001871
I
0.801
PAX3
Tursiops truncatus
ENSTTRG00000000379
I
0.798
PAX3
Echinops telfairi
ENSETEG00000006800
I
0.798
PAX3
Taeniopygia guttata
ENSTGUG00000007761
I
0.797
ENSLOCG00000004189
Lepisosteus oculatus
ENSLOCG00000004189
I
0.797
pax3a
Danio rerio
ENSDARG00000010192
I
0.797
ENSFALG00000006722
Ficedula albicollis
ENSFALG00000006722
I
0.797
ENSXMAG00000012884
Xiphophorus maculatus
ENSXMAG00000012884
I
0.793
ENSOARG00000020289
Ovis aries
ENSOARG00000020289
I
0.791
PAX7
Choloepus hoffmanni
ENSCHOG00000005130
I
0.786
ENSVPAG00000012251
Vicugna pacos
ENSVPAG00000012251
I
0.786
PAX3
Tetraodon nigroviridis
ENSTNIG00000014313
I
0.786
PAX3
Takifugu rubripes
ENSTRUG00000009198
I
0.785
ENSTSYG00000009638
Tarsius syrichta
ENSTSYG00000009638
I
0.783
ENSGMOG00000006159
Gadus morhua
ENSGMOG00000006159
I
0.782
ENSPFOG00000014283
Poecilia formosa
ENSPFOG00000014283
I
0.780
ENSXMAG00000008304
Xiphophorus maculatus
ENSXMAG00000008304
I
0.780
CGI_10026438
Crassostrea gigas
CGI_10026438
I
0.780
ENSONIG00000010028
Oreochromis niloticus
ENSONIG00000010028
I
0.780
pax3.S
Xenopus laevis
XB-GENE-482744
I
0.780
Myotis_brandtii_Pax3_10032963
Myotis brandtii
Myotis_brandtii_Pax3_10032963
I
0.779
pax3.L
Xenopus laevis
XB-GENE-6252072
I
0.778
PAX3
Tetraodon nigroviridis
ENSTNIG00000015279
I
0.777
ENSXMAG00000015270
Xiphophorus maculatus
ENSXMAG00000015270
I
0.775
ENSPFOG00000007769
Poecilia formosa
ENSPFOG00000007769
I
0.775
ENSCING00000005904
Ciona intestinalis
ENSCING00000005904
I
0.773
ENSCSAVG00000004794
Ciona savignyi
ENSCSAVG00000004794
I
0.770
ENSONIG00000014632
Oreochromis niloticus
ENSONIG00000014632
I
0.769
ENSPFOG00000016934
Poecilia formosa
ENSPFOG00000016934
I
0.769
pax3
Xenopus tropicalis
XB-GENE-482740
I
0.767
pax3b
Gasterosteus aculeatus
ENSGACG00000014017
I
0.758
PAX3
Oryzias latipes
ENSORLG00000015932
I
0.758
PAX3
Oryzias latipes
ENSORLG00000009031
I
0.758
MCINX015565
Melitaea cinxia
MCINX015565
I
0.756
PAX3
Sus scrofa
ENSSSCG00000028418
I
0.754
pax3b
Danio rerio
ENSDARG00000028348
I
0.753
PHUM134580
Pediculus humanus
PHUM134580
I
0.742
Hsal_04609--XP_394847.3_APIME
Harpegnathos saltator
Hsal_04609--XP_394847.3_APIME
I
0.740
ISCW014979
Ixodes scapularis
ISCW014979
I
0.736
TC015804
Tribolium castaneum
TC015804
I
0.736
ACYPI002777
Acyrthosiphon pisum
ACYPI002777
I
0.732
CapteG44697
Capitella teleta
CapteG44697
I
0.731
Gfo_R008876
Geospiza fortis
Gfo_R008876
I
0.725
Afo_R000224
Aptenodytes forsteri
Afo_R000224
I
0.725
CLEC002253
Cimex lectularius
CLEC002253
I
0.720
GB54180
Apis mellifera
GB54180
I
0.720
Hsal_08388--XP_394847.3_APIME
Harpegnathos saltator
Hsal_08388--XP_394847.3_APIME
I
0.715
LLOJ009941
Lutzomyia longipalpis
LLOJ009941
I
0.714
PPAI006228
Phlebotomus papatasi
PPAI006228
I
0.714
Cflo_06472--XP_394847.3_APIME
Camponotus floridanus
Cflo_06472--XP_394847.3_APIME
I
0.710
ENSGALG00000005246
Gallus gallus
ENSGALG00000005246
I
0.710
ASTEI06723
Anopheles stephensi
ASTEI06723
I
0.709
Cflo_07008--XP_394847.3_APIME
Camponotus floridanus
Cflo_07008--XP_394847.3_APIME
I
0.709
ACYPI004907
Acyrthosiphon pisum
ACYPI004907
I
0.704
SINV13311
Solenopsis invicta
SINV13311
I
0.703
NV18360
Nasonia vitripennis
NV18360
I
0.703
tetur29g00530
Tetranychus urticae
tetur29g00530
I
0.703
BGIBMGA009025
Bombyx mori
BGIBMGA009025
I
0.702