ENSAPLG00000005016 (Anas platyrhynchos)
Homeodomain,Paired box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox)
PF00292 (PAX) 		IPR001356
IPR001523 		ENSAPLG00000005016 T237272_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Pax7
M00541_2.00 		Mus musculus
NNVATTWN
NWAATBNN		 PBM
Berger et al.(2008)
Pax7_3783 		0.860 0.860
PAX7
M03292_2.00 		Homo sapiens
WAATYRATTA
TAATYRATTW		 SELEX
Jolma et al.(2013)
PAX7_1 		0.860 0.860
PAX7
M03293_2.00 		Homo sapiens
TAATYGATTA
TAATCRATTA		 SELEX
Jolma et al.(2013)
PAX7_2 		0.860 0.860
PAX7
M05416_2.00 		Homo sapiens
NDSCGTGACGAATYR
YRATTCGTCACGSHN		 SELEX
Yin et al.(2017)
PAX7_eDBD_HT-SELEX_1 		0.860 0.860
PAX7
M05417_2.00 		Homo sapiens
NSGTCACGSHWRTTAN
NTAAYWDSCGTGACSN		 SELEX
Yin et al.(2017)
PAX7_eDBD_HT-SELEX_2 		0.860 0.860
PAX7
M05418_2.00 		Homo sapiens
NNAATCRATTWN
NWAATYGATTNN		 SELEX
Yin et al.(2017)
PAX7_eDBD_HT-SELEX_3 		0.860 0.860
PAX7
M05422_2.00 		Homo sapiens
BVATTMGTCACGSHN
NDSCGTGACKAATBV		 SELEX
Yin et al.(2017)
PAX7_FL_HT-SELEX_1 		0.860 0.860
PAX7
M05423_2.00 		Homo sapiens
NSGTCACGSYWATTAN
NTAATWRSCGTGACSN		 SELEX
Yin et al.(2017)
PAX7_FL_HT-SELEX_2 		0.860 0.860
PAX7
M05424_2.00 		Homo sapiens
NTAATYGATTAN
NTAATCRATTAN		 SELEX
Yin et al.(2017)
PAX7_FL_HT-SELEX_3 		0.860 0.860
PAX7
M05874_2.00 		Homo sapiens
ATTMGTYACGSHN
NDSCGTRACKAAT		 SMiLE-seq
Isakova et al.(2017)
PAX7 		0.860 0.860
Pax7
M09586_2.00 		Mus musculus
NNNNNYAATTDNNHAATTAN
NTAATTDNNHAATTRNNNNN		 Misc
Heinz et al.(2010)
Myoblast-Pax7_GSE25064_1 		0.860 0.860
Pax7
M09587_2.00 		Mus musculus
DTAATYDGATTA
TAATCHRATTAH		 Misc
Heinz et al.(2010)
Myoblast-Pax7_GSE25064_2 		0.860 0.860
Pax7
M09588_2.00 		Mus musculus
TAATTGATTW
WAATCAATTA		 Misc
Heinz et al.(2010)
Myoblast-Pax7_GSE25064_3 		0.860 0.860
PAX7
M05419_2.00 		Homo sapiens
NVATTVGTCRCGSYN
NRSCGYGACBAATBN		 SELEX
Yin et al.(2017)
PAX7_eDBD_Methyl-HT-SELEX_1 		0.860 0.860
PAX7
M05420_2.00 		Homo sapiens
NNGTCACGSHHRTTAN
NTAAYDDSCGTGACNN		 SELEX
Yin et al.(2017)
PAX7_eDBD_Methyl-HT-SELEX_2 		0.860 0.860
PAX7
M05421_2.00 		Homo sapiens
NNAATCRATTWN
NWAATYGATTNN		 SELEX
Yin et al.(2017)
PAX7_eDBD_Methyl-HT-SELEX_3 		0.860 0.860
PAX7
M05425_2.00 		Homo sapiens
YRATTMGTCACGSHN
NDSCGTGACKAATYR		 SELEX
Yin et al.(2017)
PAX7_FL_Methyl-HT-SELEX_1 		0.860 0.860
PAX7
M05426_2.00 		Homo sapiens
NSGTCACGSYWATTAN
NTAATWRSCGTGACSN		 SELEX
Yin et al.(2017)
PAX7_FL_Methyl-HT-SELEX_2 		0.860 0.860
PAX7
M05427_2.00 		Homo sapiens
NTAATYGATTAN
NTAATCRATTAN		 SELEX
Yin et al.(2017)
PAX7_FL_Methyl-HT-SELEX_3 		0.860 0.860
PAX3
M00358_2.00 		Homo sapiens
NRTNNNN
NNNNAYN		 PBM
Barrera et al.(2016)
PAX3_REF 		0.816 0.816
PAX3
M03297_2.00 		Homo sapiens
TAATYRATTA
TAATYRATTA		 SELEX
Jolma et al.(2013)
PAX3_1 		0.816 0.816
PAX3
M03885_2.00 		Homo sapiens
NNTAATYGATTANN
NNTAATCRATTANN		 SELEX
Nitta et al.(2015)
PAX3_1 		0.816 0.816
PAX3
M03886_2.00 		Homo sapiens
RATTMGTCACGST
ASCGTGACKAATY		 SELEX
Nitta et al.(2015)
PAX3_2 		0.816 0.816
PAX3
M05438_2.00 		Homo sapiens
NSGTCACGSHHATTAN
NTAATDDSCGTGACSN		 SELEX
Yin et al.(2017)
PAX3_eDBD_HT-SELEX_1 		0.816 0.816
PAX3
M05439_2.00 		Homo sapiens
NDAATCRATTMN
NKAATYGATTHN		 SELEX
Yin et al.(2017)
PAX3_eDBD_HT-SELEX_2 		0.816 0.816
PAX3
M05440_2.00 		Homo sapiens
NBRATTMGTCACGSHN
NDSCGTGACKAATYVN		 SELEX
Yin et al.(2017)
PAX3_eDBD_HT-SELEX_3 		0.816 0.816
PAX3
M09585_2.00 		Homo sapiens
WSYRTGACWAATBNN
NNVATTWGTCAYRSW		 Misc
Heinz et al.(2010)
Rh4-PAX3_FKHR_GSE19063 		0.816 0.816
PAX3
M10816_2.00 		Homo sapiens
TCGTCACRCHYHM
KDRDGYGTGACGA		 Transfac
Matys et al.(2006)
V$PAX3_01 		0.816 0.816
PAX3
M10817_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PAX3_B 		0.816 0.816
PAX3
M00359_2.00 		Homo sapiens
NTAATYRV
BYRATTAN		 PBM
Barrera et al.(2016)
PAX3_Y90H 		0.816 0.816
PAX3
M05441_2.00 		Homo sapiens
NNGTCACGSHWRTTAN
NTAAYWDSCGTGACNN		 SELEX
Yin et al.(2017)
PAX3_eDBD_Methyl-HT-SELEX_1 		0.816 0.816
PAX3
M05442_2.00 		Homo sapiens
NWAATCRATTAN
NTAATYGATTWN		 SELEX
Yin et al.(2017)
PAX3_eDBD_Methyl-HT-SELEX_2 		0.816 0.816
PAX3
M05443_2.00 		Homo sapiens
NNRATTVGTCRCGSHN
NDSCGYGACBAATYNN		 SELEX
Yin et al.(2017)
PAX3_eDBD_Methyl-HT-SELEX_3 		0.816 0.816
PAX3
M00352_2.00 		Homo sapiens
VNTAATYR
YRATTANB		 PBM
Barrera et al.(2016)
PAX3_G48R 		0.810 0.810
PAX3
M00353_2.00 		Homo sapiens
NNNNRTNNN
NNNAYNNNN		 PBM
Barrera et al.(2016)
PAX3_N47H 		0.810 0.810
PAX3
M00354_2.00 		Homo sapiens
NNNRYNN
NNRYNNN		 PBM
Barrera et al.(2016)
PAX3_N47K 		0.810 0.810
PAX3
M00355_2.00 		Homo sapiens
NNNATNWNN
NNWNATNNN		 PBM
Barrera et al.(2016)
PAX3_P50L 		0.810 0.810
PAX3
M00356_2.00 		Homo sapiens
NNKWCAYDDWN
NWHHRTGWMNN		 PBM
Barrera et al.(2016)
PAX3_R270C 		0.810 0.810
PAX3
M00357_2.00 		Homo sapiens
NNNATNWNN
NNWNATNNN		 PBM
Barrera et al.(2016)
PAX3_R56L 		0.810 0.810
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSAPLP00000004630 Paired box 29 157
ENSAPLP00000004630 Homeodomain 217 273

Links

Other Homeodomain,Paired box family TFs
Other Anas platyrhynchos TFs

Invalid Input OrderBy

156 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action