PAX4 (Callithrix jacchus)
Homeodomain,Paired box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox)
PF00292 (PAX)
IPR001356
IPR001523
ENSCJAG00000017652 T237292_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
PAX4
M00350_2.00
Homo sapiens
NNNATTAN

NTAATNNN
PBM
Barrera et al.(2016)
PAX4_REF
0.962 0.962
PAX4
M00351_2.00
Homo sapiens
NNNATTAN

NTAATNNN
PBM
Barrera et al.(2016)
PAX4_REF_R3
0.983 0.983
PAX4
M03295_2.00
Homo sapiens
HKAATTAR

YTAATTMD
SELEX
Jolma et al.(2013)
PAX4_1
0.983 0.983
PAX4
M03296_2.00
Homo sapiens
YKAATTAV

BTAATTMR
SELEX
Jolma et al.(2013)
PAX4_2
0.983 0.983
PAX4
M03883_2.00
Homo sapiens
SGTCACGCWTSRNTG

CANYSAWGCGTGACS
SELEX
Nitta et al.(2015)
PAX4_1
0.983 0.983
PAX4
M03884_2.00
Homo sapiens
NNAATTANYKAATDMV

BKHATTMRNTAATTNN
SELEX
Nitta et al.(2015)
PAX4_2
0.962 0.962
PAX4
M05430_2.00
Homo sapiens
NAATTANNNNNNVNTAATTN

NAATTANBNNNNNNTAATTN
SELEX
Yin et al.(2017)
PAX4_eDBD_HT-SELEX_1
0.962 0.962
PAX4
M05431_2.00
Homo sapiens
NRYTWYACGCWTSRNYRNNYV

BRNNYRNYSAWGCGTRWARYN
SELEX
Yin et al.(2017)
PAX4_eDBD_HT-SELEX_2
0.962 0.962
PAX4
M05432_2.00
Homo sapiens
NTYACGCWYSRNYKMVYN

NRBKMRNYSRWGCGTRAN
SELEX
Yin et al.(2017)
PAX4_eDBD_HT-SELEX_3
0.962 0.962
PAX4
M05433_2.00
Homo sapiens
WHACGSTMATTDR

YHAATKASCGTDW
SELEX
Yin et al.(2017)
PAX4_eDBD_HT-SELEX_4
0.983 0.983
PAX4
M10811_2.00
Homo sapiens
NVNBSNNYVCGCHTSAMBNCN

NGNVKTSADGCGBRNNSVNBN
Transfac
Matys et al.(2006)
V$PAX4_01
0.983 0.983
PAX4
M10812_2.00
Homo sapiens
NAHWAATTDVV

BBHAATTWDTN
Transfac
Matys et al.(2006)
V$PAX4_02
0.983 0.983
PAX4
M10813_2.00
Homo sapiens
NDNNHYCACCCB

VGGGTGRDNNHN
Transfac
Matys et al.(2006)
V$PAX4_03
0.983 0.983
PAX4
M10814_2.00
Homo sapiens
RRAAAWWRNNHHNVHHNVHVNNHHSAYHSB

VSDRTSDDNNBDBNDDBNDDNNYWWTTTYY
Transfac
Matys et al.(2006)
V$PAX4_04
0.962 0.962
PAX4
M10815_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX4_Q2
0.962 0.962
PAX4
M05434_2.00
Homo sapiens
NHATTANBTAATDN

NHATTAVNTAATDN
SELEX
Yin et al.(2017)
PAX4_eDBD_Methyl-HT-SELEX_1
0.962 0.962
PAX4
M05435_2.00
Homo sapiens
VATTWYACGCWTSRNYDVNYN

NRNBHRNYSAWGCGTRWAATB
SELEX
Yin et al.(2017)
PAX4_eDBD_Methyl-HT-SELEX_2
0.962 0.962
PAX4
M05436_2.00
Homo sapiens
HTYACGCWTSANYGMNYN

NRNKCRNTSAWGCGTRAD
SELEX
Yin et al.(2017)
PAX4_eDBD_Methyl-HT-SELEX_3
0.983 0.983
PAX4
M05437_2.00
Homo sapiens
DHRYGCTAATTAN

NTAATTAGCRYDH
SELEX
Yin et al.(2017)
PAX4_eDBD_Methyl-HT-SELEX_4
0.983 0.983
PAX4
M00347_2.00
Homo sapiens
NNNATND

HNATNNN
PBM
Barrera et al.(2016)
PAX4_R183C
0.978 0.978
PAX4
M00348_2.00
Homo sapiens
NNDATTAN

NTAATHNN
PBM
Barrera et al.(2016)
PAX4_R192H
0.978 0.978
PAX4
M00349_2.00
Homo sapiens
NNNATTANN

NNTAATNNN
PBM
Barrera et al.(2016)
PAX4_R192S
0.956 0.956
Pax4
M00542_2.00
Mus musculus
NNNATTAN

NTAATNNN
PBM
Berger et al.(2008)
Pax4_3989
0.934 0.934
PAX6
M00342_2.00
Homo sapiens
NNNRCDMATTANNN

NNNTAATKHGYNNN
PBM
Barrera et al.(2016)
PAX6_REF
0.702 0.702
Pax6
M00540_2.00
Mus musculus
CBAATTAA

TTAATTVG
PBM
Berger et al.(2008)
Pax6_3838
0.702 0.702
PAX6
M03291_2.00
Homo sapiens
DTWYACGCWTGANTGMDYH

DRHKCANTCAWGCGTRWAH
SELEX
Jolma et al.(2013)
PAX6_1
0.702 0.702
PAX6
M05412_2.00
Homo sapiens
NYACGCHYSRNYRMNYN

NRNKYRNYSRDGCGTRN
SELEX
Yin et al.(2017)
PAX6_eDBD_HT-SELEX
0.702 0.702
PAX6
M05414_2.00
Homo sapiens
NYRCGCNYSRNYRVNYN

NRNBYRNYSRNGCGYRN
SELEX
Yin et al.(2017)
PAX6_FL_HT-SELEX
0.702 0.702
PAX6
M02689_2.00
Homo sapiens
TTYACGCWTSANTK

MANTSAWGCGTRAA
SELEX
Mathelier et al.(2014)
MA0069.1
0.702 0.702
PAX6
M09216_2.00
Homo sapiens
TYMYRCWTSRNT

ANYSAWGYRKRA
Misc
Kulakovskiy et al.(2013)
PAX6_HUMAN.H11MO.0.C
0.702 0.702
Pax6
M09217_2.00
Mus musculus
TYMYRCWTSRNT

ANYSAWGYRKRA
Misc
Kulakovskiy et al.(2013)
PAX6_MOUSE.H11MO.0.C
0.702 0.702
PAX6
M10806_2.00
Homo sapiens
NHNNTTYACGCWTSANTKVHH

DDBMANTSAWGCGTRAANNDN
Transfac
Matys et al.(2006)
V$PAX6_01
0.702 0.702
PAX6
M10807_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX6_Q2
0.702 0.702
PAX6
M00340_2.00
Homo sapiens
NNNNNRN

NYNNNNN
PBM
Barrera et al.(2016)
PAX6_R242T
0.702 0.702
PAX6
M05413_2.00
Homo sapiens
DYRCGCWTSRNYRMNYN

NRNKYRNYSAWGCGYRH
SELEX
Yin et al.(2017)
PAX6_eDBD_Methyl-HT-SELEX
0.702 0.702
PAX6
M05415_2.00
Homo sapiens
NYACGCHYSRNYRMHYN

NRDKYRNYSRDGCGTRN
SELEX
Yin et al.(2017)
PAX6_FL_Methyl-HT-SELEX
0.702 0.702
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSCJAP00000032543 Paired box 1 121
ENSCJAP00000032543 Homeodomain 163 219
ENSCJAP00000032550 Paired box 1 125
ENSCJAP00000032550 Homeodomain 167 223

Links

Other Homeodomain,Paired box family TFs
Other Callithrix jacchus TFs

56 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ENSCSAG00000010195 Chlorocebus sabaeus ENSCSAG00000010195 I 0.994
ENSNLEG00000012257 Nomascus leucogenys ENSNLEG00000012257 I 0.989
PAX4 Gorilla gorilla ENSGGOG00000002555 I 0.989
ENSP00000368014 Macaca fascicularis ENSP00000368014 I 0.989
PAX4 Macaca mulatta ENSMMUG00000015429 I 0.989
PAX4 Canis familiaris ENSCAFG00000001719 I 0.989
PAX4 Homo sapiens ENSG00000106331 D 0.984
ENSOARG00000001951 Ovis aries ENSOARG00000001951 I 0.984
PAX4 Microcebus murinus ENSMICG00000000095 I 0.984
PAX4 Pan troglodytes ENSPTRG00000019653 I 0.984
ENSPPYG00000017971 Pongo abelii ENSPPYG00000017971 I 0.984
ENSAMEG00000004648 Ailuropoda melanoleuca ENSAMEG00000004648 I 0.984
PAX4 Sus scrofa ENSSSCG00000016591 I 0.978
Myotis_brandtii_Pax4_10010526 Myotis brandtii Myotis_brandtii_Pax4_10010526 I 0.978
PAX4 Felis catus ENSFCAG00000005485 I 0.978
PAX4 Equus caballus ENSECAG00000008343 I 0.978
PAX4 Procavia capensis ENSPCAG00000016257 I 0.978
PAX4 Oryctolagus cuniculus ENSOCUG00000001612 I 0.973
PAX4 Bos taurus ENSBTAG00000000410 I 0.973
PAX4 Pteropus vampyrus ENSPVAG00000013944 I 0.973
PAX4 Otolemur garnettii ENSOGAG00000013348 I 0.973
ENSBTAP00000042667-D1 Bos grunniens ENSBTAP00000042667-D1 I 0.973
PAX4 Loxodonta africana ENSLAFG00000005297 I 0.971
ENSMPUG00000006575 Mustela putorius furo ENSMPUG00000006575 I 0.967
ENSSTOG00000002127 Ictidomys tridecemlineatus ENSSTOG00000002127 I 0.962
PAX4 Tursiops truncatus ENSTTRG00000006056 I 0.962
PAX4 Cavia porcellus ENSCPOG00000006244 I 0.956
PAX4 Erinaceus europaeus ENSEEUG00000009616 I 0.951
Pax4 Rattus norvegicus ENSRNOG00000008020 I 0.945
Pax4 Mus musculus ENSMUSG00000029706 D 0.934
Pax4 Dipodomys ordii ENSDORG00000000332 I 0.929
PAX4 Ochotona princeps ENSOPRG00000013381 I 0.921
PAX4 Choloepus hoffmanni ENSCHOG00000009265 I 0.914
PAX4 Sorex araneus ENSSARG00000004842 I 0.912
ENSSHAG00000015143 Sarcophilus harrisii ENSSHAG00000015143 I 0.863
ENSDNOG00000030639 Dasypus novemcinctus ENSDNOG00000030639 I 0.863
PAX4 Myotis lucifugus ENSMLUG00000030302 I 0.835
PAX4 Ornithorhynchus anatinus ENSOANG00000000819 I 0.811
Afo_R008534 Aptenodytes forsteri Afo_R008534 I 0.758
Alligator_sinensis_CCG000926.1 Alligator sinensis Alligator_sinensis_CCG000926.1 I 0.724
pax6b Gasterosteus aculeatus ENSGACG00000016030 I 0.708
ENSPFOG00000016987 Poecilia formosa ENSPFOG00000016987 I 0.708
ENSXMAG00000014260 Xiphophorus maculatus ENSXMAG00000014260 I 0.708
pax6b Oryzias latipes ENSORLG00000009913 I 0.708
ENSONIG00000005541 Oreochromis niloticus ENSONIG00000005541 I 0.708
Alligator_sinensis_CCG012954.1 Alligator sinensis Alligator_sinensis_CCG012954.1 I 0.702
pax6a Danio rerio ENSDARG00000103379 I 0.702
pax6b Danio rerio ENSDARG00000045936 I 0.702
ENSONIG00000004074 Oreochromis niloticus ENSONIG00000004074 I 0.702
ENSGMOG00000012304 Gadus morhua ENSGMOG00000012304 I 0.702
ENSLOCG00000004578 Lepisosteus oculatus ENSLOCG00000004578 I 0.702
ENSLACG00000015337 Latimeria chalumnae ENSLACG00000015337 I 0.702
ENSXMAG00000016421 Xiphophorus maculatus ENSXMAG00000016421 I 0.702
PAX6 Tupaia belangeri ENSTBEG00000004748 I 0.702
Cmyd_10003254 Chelonia mydas Cmyd_10003254 N 0.701