TF Information

ENSCSAVG00000007987 *(Ciona savignyi)* Homeodomain,Paired box
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00046 (Homeobox) PF00292 (PAX)	IPR001356 IPR001523	ENSCSAVG00000007987	T237304_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
PAX6 M00342_2.00	Homo sapiens	NNNRCDMATTANNN	NNNTAATKHGYNNN	PBM Barrera et al.(2016) PAX6_REF	0.912	0.912
pax2b M02425_2.00	Danio rerio	HVNYSRNSCR	YGSNYSRNBD	PBM Weirauch et al.(2014) pTH8679	0.737	0.737
Pax6 M00540_2.00	Mus musculus	CBAATTAA	TTAATTVG	PBM Berger et al.(2008) Pax6_3838	0.912	0.912
pax2 M02428_2.00	Xenopus tropicalis	NNNRNBCRNN	NNYGVNYNNN	PBM Weirauch et al.(2014) pTH8556	0.737	0.737
PAX8 M05685_2.00	Homo sapiens	NRNBYRNYSRWGCGTGACSN	NSGTCACGCWYSRNYRVNYN	SELEX Yin et al.(2017) PAX8_FL_HT-SELEX	0.737	0.737
PAX6 M03291_2.00	Homo sapiens	DTWYACGCWTGANTGMDYH	DRHKCANTCAWGCGTRWAH	SELEX Jolma et al.(2013) PAX6_1	0.912	0.912
Pax8 M09624_2.00	Rattus norvegicus	BCAGBCADSCRKGVM	KBCMYGSHTGVCTGV	Misc Heinz et al.(2010) Thyroid-Pax8_GSE26938	0.737	0.737
PAX6 M05412_2.00	Homo sapiens	NYACGCHYSRNYRMNYN	NRNKYRNYSRDGCGTRN	SELEX Yin et al.(2017) PAX6_eDBD_HT-SELEX	0.912	0.912
PAX8 M11205_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$PAX8_01	0.737	0.737
PAX6 M05414_2.00	Homo sapiens	NYRCGCNYSRNYRVNYN	NRNBYRNYSRNGCGYRN	SELEX Yin et al.(2017) PAX6_FL_HT-SELEX	0.912	0.912
PAX6 M02689_2.00	Homo sapiens	TTYACGCWTSANTK	MANTSAWGCGTRAA	SELEX Mathelier et al.(2014) MA0069.1	0.889	0.889
PAX8 M11206_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$PAX8_B	0.737	0.737
PAX6 M09216_2.00	Homo sapiens	TYMYRCWTSRNT	ANYSAWGYRKRA	Misc Kulakovskiy et al.(2013) PAX6_HUMAN.H11MO.0.C	0.889	0.889
PAX8 M05686_2.00	Homo sapiens	NRNBCRNTSAWSCGYGACNN	NNGTCRCGSWTSANYGVNYN	SELEX Yin et al.(2017) PAX8_FL_Methyl-HT-SELEX	0.737	0.737
Pax6 M09217_2.00	Mus musculus	TYMYRCWTSRNT	ANYSAWGYRKRA	Misc Kulakovskiy et al.(2013) PAX6_MOUSE.H11MO.0.C	0.889	0.889
Pax5B M01301_2.00	Gallus gallus	NSNDTNNNN	NNNNAHNSN	PBM Lambert et al.(2019) pTH9781	0.726	0.726
PAX6 M10806_2.00	Homo sapiens	NHNNTTYACGCWTSANTKVHH	DDBMANTSAWGCGTRAANNDN	Transfac Matys et al.(2006) V$PAX6_01	0.912	0.912
PAX5 M03443_2.00	Homo sapiens	RNBYANYSAWSCGTRACN	NGTYACGSWTSRNTRVNY	SELEX Jolma et al.(2013) PAX5_1	0.726	0.726
PAX6 M10807_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$PAX6_Q2	0.912	0.912
PAX5 M08160_2.00	Homo sapiens	RDGCGTGACCNN	NNGGTCACGCHY	ChIP-seq Mathelier et al.(2014) MA0014.3	0.726	0.726
PAX5 M07995_2.00	Homo sapiens	BCAVYSRDSCRKRRC	GYYMYGSHYSRBTGV	ChIP-seq Gerstein et al.(2012) GM12878_PAX5C20_HudsonAlpha	0.726	0.726
PAX6 M05413_2.00	Homo sapiens	DYRCGCWTSRNYRMNYN	NRNKYRNYSAWGCGYRH	SELEX Yin et al.(2017) PAX6_eDBD_Methyl-HT-SELEX	0.912	0.912
PAX6 M00339_2.00	Homo sapiens	NNNNSGKVGGHNN	NNDCCBMCSNNNN	PBM Barrera et al.(2016) PAX6_R128C	0.889	0.889
PAX5 M07996_2.00	Homo sapiens	BCASYSRDSCRTRAC	GTYAYGSHYSRSTGV	ChIP-seq Gerstein et al.(2012) GM12878_PAX5N19_HudsonAlpha	0.726	0.726
PAX6 M05415_2.00	Homo sapiens	NYACGCHYSRNYRMHYN	NRDKYRNYSRDGCGTRN	SELEX Yin et al.(2017) PAX6_FL_Methyl-HT-SELEX	0.912	0.912
PAX6 M00344_2.00	Homo sapiens	NNMSASGBYNNN	NNNRVCSTSKNN	PBM Barrera et al.(2016) PAX6_V126D	0.889	0.889
PAX5 M07997_2.00	Homo sapiens	CASYSRDSCRKRACN	NGTYMYGSHYSRSTG	ChIP-seq Gerstein et al.(2012) GM12891_PAX5C20_HudsonAlpha	0.726	0.726
PAX6 M00335_2.00	Homo sapiens	BRNNNNNN	NNNNNNYV	PBM Barrera et al.(2016) PAX6_A79E	0.907	0.907
PAX5 M07998_2.00	Homo sapiens	BCASYSRDSCGKRRC	GYYMCGSHYSRSTGV	ChIP-seq Gerstein et al.(2012) GM12892_PAX5C20_HudsonAlpha	0.726	0.726
PAX6 M00336_2.00	Homo sapiens	RTGCACAC	GTGTGCAY	PBM Barrera et al.(2016) PAX6_F258S	0.907	0.907
PAX5 M08227_2.00	Homo sapiens	BCANYSRDGCGTRAM	KTYACGCHYSRNTGV	ChIP-seq Contrino et al.(2012) Mv108	0.726	0.726
PAX6 M00337_2.00	Homo sapiens	NMTAATTANNN	NNNTAATTAKN	PBM Barrera et al.(2016) PAX6_P118R	0.907	0.907
PAX5 M08228_2.00	Homo sapiens	AGCGTGRCYG	CRGYCACGCT	ChIP-seq Contrino et al.(2012) Mv109	0.726	0.726
PAX6 M00338_2.00	Homo sapiens	WSGVRVDR	YHBYBCSW	PBM Barrera et al.(2016) PAX6_P68S	0.907	0.907
PAX5 M09341_2.00	Homo sapiens	SNVDGNKCARCVRAGCRDGAC	GTCHYGCTYBGYTGMNCHBNS	Misc Kulakovskiy et al.(2013) PAX5_HUMAN.H11MO.0.A	0.726	0.726
PAX6 M00340_2.00	Homo sapiens	NNNNNRN	NYNNNNN	PBM Barrera et al.(2016) PAX6_R242T	0.907	0.907
Pax5 M09342_2.00	Mus musculus	VDRNBCAVYVRDSCRKRRM	KYYMYGSHYBRBTGVNYHB	Misc Kulakovskiy et al.(2013) PAX5_MOUSE.H11MO.0.A	0.726	0.726
PAX5 M09622_2.00	Homo sapiens	BCASYSRDSCRTGRMN	NKYCAYGSHYSRSTGV	Misc Heinz et al.(2010) GM12878-PAX5_GSE32465_1	0.726	0.726
PAX6 M00341_2.00	Homo sapiens	BTSCCCSGSC	GSCSGGGSAV	PBM Barrera et al.(2016) PAX6_R26G	0.907	0.907
PAX5 M09623_2.00	Homo sapiens	BCABNVRSCGTGAC	GTCACGSYBNVTGV	Misc Heinz et al.(2010) GM12878-PAX5_GSE32465_2	0.726	0.726
PAX6 M00343_2.00	Homo sapiens	NNNNCCCVKCNBN	NVNGMBGGGNNNN	PBM Barrera et al.(2016) PAX6_S119R	0.907	0.907
PAX5 M11208_2.00	Homo sapiens	BCNNNRNKCANBGNWGNRKRGMSRSHNB	VNDSYSKCYMYNCWNCVNTGMNYNNNGV	Transfac Matys et al.(2006) V$PAX5_01	0.726	0.726
ey M03896_2.00	Drosophila melanogaster	CKAATTAD	HTAATTMG	SELEX Nitta et al.(2015) ey_1	0.850	0.850
PAX5 M11209_2.00	Homo sapiens	VRHVDGDNDBBTNRAGCGKRACVRYNVH	DBNRYBGTYMCGCTYNAVVHNHCHBDYB	Transfac Matys et al.(2006) V$PAX5_02	0.726	0.726
ey M03897_2.00	Drosophila melanogaster	HTAATCKMATTAD	HTAATKMGATTAD	SELEX Nitta et al.(2015) ey_2	0.850	0.850
PAX5 M11210_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$PAX5_06	0.726	0.726
ey M03898_2.00	Drosophila melanogaster	WAAYYRRTTN	NAAYYRRTTW	SELEX Nitta et al.(2015) ey_3	0.850	0.850
PAX5 M11211_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$PAX5_07	0.726	0.726
toy M03899_2.00	Drosophila melanogaster	TTYACGCWTGASTGMACAN	NTGTKCASTCAWGCGTRAA	SELEX Nitta et al.(2015) toy_1	0.863	0.863
PAX5 M11212_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$PAX5_Q6	0.726	0.726
toy M03900_2.00	Drosophila melanogaster	NTYACGCWTSAVTGMRCNN	NNGYKCABTSAWGCGTRAN	SELEX Nitta et al.(2015) toy_2	0.863	0.863
sv M01302_2.00	Drosophila melanogaster	NNNSCRBRDM	KHYVYGSNNN	PBM Lambert et al.(2019) pTH9773	0.716	0.716
sv M03949_2.00	Drosophila melanogaster	NBCRNYSAWGCGTGACS	SGTCACGCWTSRNYGVN	SELEX Nitta et al.(2015) sv_1	0.716	0.716
toy M03901_2.00	Drosophila melanogaster	VATTANBHAYGSWYSRN	NYSRWSCRTDVNTAATB	SELEX Nitta et al.(2015) toy_3	0.863	0.863
sv M06438_2.00	Drosophila melanogaster	RNYSRDSCGTRACNN	NNGTYACGSHYSRNY	B1H Zhu et al.(2011) sv_SOLEXA_5_FBgn0005561	0.716	0.716
PAX7 M00346_2.00	Homo sapiens	NGTYAYGSHN	NDSCRTRACN	PBM Barrera et al.(2016) PAX7_REF	0.705	0.705
Poxm M03944_2.00	Drosophila melanogaster	CAVTCAWGCGTGACR	YGTCACGCWTGABTG	SELEX Nitta et al.(2015) Poxm_1	0.705	0.705
Poxm M03945_2.00	Drosophila melanogaster	NYSAWGCRTRACS	SGTYAYGCWTSRN	SELEX Nitta et al.(2015) Poxm_2	0.705	0.705
Poxm M06436_2.00	Drosophila melanogaster	NNNNNNMVNHNRNSCRTGA	TCAYGSNYNDNBKNNNNNN	B1H Zhu et al.(2011) Poxm_SOLEXA_5_FBgn0003129	0.705	0.705
For this family, TFs with SR scores > 0.700* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
ENSCSAVP00000013622	Paired box	26	150	GHSGMNQLGGMFVNGRPLPDSIRQKIVEFAHNGARPCDISRILQVSNGCVSKILARYYETGTIRPRAIGGSKPRVATPEVVNKIASYKRECPSIFAWEIRDRLLNEGTCNNDNIPSVSSINRVLR
ENSCSAVP00000013622	Homeodomain	231	287	QRNRTSFTQIQVEALEKEFERTHYPDVFARERLASKIDLPEARIQVWFSNRRAKWRR
ENSCSAVP00000013623	Paired box	10	134	GHSGMNQLGGMFVNGRPLPDSIRQKIVEFAHNGARPCDISRILQVSNGCVSKILARYYETGTIRPRAIGGSKPRVATPEVVNKIASYKRECPSIFAWEIRDRLLNEGTCNNDNIPSVSSINRVLR
ENSCSAVP00000013623	Homeodomain	306	362	QRNRTSFTQIQVEALEKEFERTHYPDVFARERLASKIDLPEARIQVWFSNRRAKWRR
ENSCSAVP00000013624	Paired box	26	150	GHSGMNQLGGMFVNGRPLPDSIRQKIVEFAHNGARPCDISRILQVSNGCVSKILARYYETGTIRPRAIGGSKPRVATPEVVNKIASYKRECPSIFAWEIRDRLLNEGTCNNDNIPSVYGNSEARL
ENSCSAVP00000013624	Homeodomain	157	213	QRNRTSFTQIQVEALEKEFERTHYPDVFARERLASKIDLPEARIQVWFSNRRAKWRR
ENSCSAVP00000013625	Paired box	2	126	GHSGMNQLGGMFVNGRPLPDSIRQKIVEFAHNGARPCDISRILQVSNGCVSKILARYYETGTIRPRAIGGSKPRVATPEVVNKIASYKRECPSIFAWEIRDRLLNEGTCNNDNIPSVSSINRVLR
ENSCSAVP00000013625	Homeodomain	212	268	QRNRTSFTQIQVEALEKEFERTHYPDVFARERLASKIDLPEARIQVWFSNRRAKWRR
ENSCSAVP00000013626	Paired box	1	95	HNGARPCDISRILQVSNGCVSKILARYYETGTIRPRAIGGSKPRVATPEVVNKIASYKRECPSIFAWEIRDRLLNEGTCNNDNIPSVSSINRVLR
ENSCSAVP00000013627	Paired box	1	95	HNGARPCDISRILQVSNGCVSKILARYYETGTIRPRAIGGSKPRVATPEVVNKIASYKRECPSIFAWEIRDRLLNEGTCNNDNIPSVSSINRVLR

Links
Other Homeodomain,Paired box family TFs
Other *Ciona savignyi* TFs

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425 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action

ENSCSAVG00000007987 (Ciona savignyi) Homeodomain,Paired box

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

425 Related TFs

Invalid Input OrderBy

ENSCSAVG00000007987 **(Ciona savignyi)
Homeodomain,Paired box**