Pax2 (Dipodomys ordii)
Homeodomain,Paired box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox)
PF00292 (PAX)
IPR001356
IPR001523
ENSDORG00000006193 T237318_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
PAX2
M03294_2.00
Homo sapiens
SGTCACGCWTSRNTGVNY

RNBCANYSAWGCGTGACS
SELEX
Jolma et al.(2013)
PAX2_1
0.987 0.987
PAX2
M05428_2.00
Homo sapiens
NSGYYACGCNYSRNYRVNBN

NVNBYRNYSRNGCGTRRCSN
SELEX
Yin et al.(2017)
PAX2_eDBD_HT-SELEX
0.987 0.987
Pax2
M02690_2.00
Mus musculus
NRTCAYKB

VMRTGAYN
SELEX
Mathelier et al.(2014)
MA0067.1
0.987 0.987
PAX2
M10808_2.00
Homo sapiens
NNHNRTYAHKBRHDMBBNN

NNVVKHDYVMDWRAYNDNN
Transfac
Matys et al.(2006)
V$PAX2_01
0.987 0.987
PAX2
M10809_2.00
Homo sapiens
NDSTTTNNN

NNNAAASHN
Transfac
Matys et al.(2006)
V$PAX2_02
0.987 0.987
PAX2
M10810_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX2_Q2
0.987 0.987
PAX2
M05429_2.00
Homo sapiens
NSGTCACGCWTSANYGVNYN

NRNBCRNTSAWGCGTGACSN
SELEX
Yin et al.(2017)
PAX2_eDBD_Methyl-HT-SELEX
0.987 0.987
PAX6
M00342_2.00
Homo sapiens
NNNRCDMATTANNN

NNNTAATKHGYNNN
PBM
Barrera et al.(2016)
PAX6_REF
0.706 0.706
Pax6
M00540_2.00
Mus musculus
CBAATTAA

TTAATTVG
PBM
Berger et al.(2008)
Pax6_3838
0.706 0.706
PAX6
M03291_2.00
Homo sapiens
DTWYACGCWTGANTGMDYH

DRHKCANTCAWGCGTRWAH
SELEX
Jolma et al.(2013)
PAX6_1
0.706 0.706
PAX6
M05412_2.00
Homo sapiens
NYACGCHYSRNYRMNYN

NRNKYRNYSRDGCGTRN
SELEX
Yin et al.(2017)
PAX6_eDBD_HT-SELEX
0.706 0.706
PAX6
M05414_2.00
Homo sapiens
NYRCGCNYSRNYRVNYN

NRNBYRNYSRNGCGYRN
SELEX
Yin et al.(2017)
PAX6_FL_HT-SELEX
0.706 0.706
PAX6
M02689_2.00
Homo sapiens
TTYACGCWTSANTK

MANTSAWGCGTRAA
SELEX
Mathelier et al.(2014)
MA0069.1
0.706 0.706
PAX6
M09216_2.00
Homo sapiens
TYMYRCWTSRNT

ANYSAWGYRKRA
Misc
Kulakovskiy et al.(2013)
PAX6_HUMAN.H11MO.0.C
0.706 0.706
Pax6
M09217_2.00
Mus musculus
TYMYRCWTSRNT

ANYSAWGYRKRA
Misc
Kulakovskiy et al.(2013)
PAX6_MOUSE.H11MO.0.C
0.706 0.706
PAX6
M10806_2.00
Homo sapiens
NHNNTTYACGCWTSANTKVHH

DDBMANTSAWGCGTRAANNDN
Transfac
Matys et al.(2006)
V$PAX6_01
0.706 0.706
PAX6
M10807_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX6_Q2
0.706 0.706
PAX6
M00336_2.00
Homo sapiens
RTGCACAC

GTGTGCAY
PBM
Barrera et al.(2016)
PAX6_F258S
0.706 0.706
PAX6
M00340_2.00
Homo sapiens
NNNNNRN

NYNNNNN
PBM
Barrera et al.(2016)
PAX6_R242T
0.706 0.706
PAX6
M00344_2.00
Homo sapiens
NNMSASGBYNNN

NNNRVCSTSKNN
PBM
Barrera et al.(2016)
PAX6_V126D
0.706 0.706
PAX6
M05413_2.00
Homo sapiens
DYRCGCWTSRNYRMNYN

NRNKYRNYSAWGCGYRH
SELEX
Yin et al.(2017)
PAX6_eDBD_Methyl-HT-SELEX
0.706 0.706
PAX6
M05415_2.00
Homo sapiens
NYACGCHYSRNYRMHYN

NRDKYRNYSRDGCGTRN
SELEX
Yin et al.(2017)
PAX6_FL_Methyl-HT-SELEX
0.706 0.706
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSDORP00000005799 Paired box 16 137
ENSDORP00000005799 Homeodomain 249 279

Links

Other Homeodomain,Paired box family TFs
Other Dipodomys ordii TFs

73 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ENSSTOG00000011575 Ictidomys tridecemlineatus ENSSTOG00000011575 I 1.000
ENSCSAG00000005568 Chlorocebus sabaeus ENSCSAG00000005568 I 1.000
PAX2 Homo sapiens ENSG00000075891 D 0.987
Pax2 Mus musculus ENSMUSG00000004231 D 0.987
ENSMPUG00000016955 Mustela putorius furo ENSMPUG00000016955 I 0.987
Pax2 Rattus norvegicus ENSRNOG00000014253 I 0.987
ENSFALG00000007308 Ficedula albicollis ENSFALG00000007308 I 0.974
PAX2 Taeniopygia guttata ENSTGUG00000007620 I 0.974
Gfo_R002455 Geospiza fortis Gfo_R002455 I 0.974
ENSAMEG00000017523 Ailuropoda melanoleuca ENSAMEG00000017523 I 0.968
PAX2 Oryctolagus cuniculus ENSOCUG00000012860 I 0.968
PAX2 Macaca mulatta ENSMMUG00000009163 I 0.968
PAX2 Ochotona princeps ENSOPRG00000007096 I 0.968
PAX2 Otolemur garnettii ENSOGAG00000015274 I 0.968
Myotis_brandtii_PAX2_10025650 Myotis brandtii Myotis_brandtii_PAX2_10025650 I 0.968
ENSPANG00000021132 Papio anubis ENSPANG00000021132 I 0.968
PAX2 Pan troglodytes ENSPTRG00000002853 I 0.968
PAX2 Pteropus vampyrus ENSPVAG00000002148 I 0.968
PAX2 Sus scrofa ENSSSCG00000010556 I 0.968
ENSPPYG00000002572 Pongo abelii ENSPPYG00000002572 I 0.968
ENSP00000359319-D1 Bos grunniens ENSP00000359319-D1 I 0.968
PAX2 Tursiops truncatus ENSTTRG00000015106 I 0.968
PAX2 Procavia capensis ENSPCAG00000006623 I 0.968
ENSP00000359319 Macaca fascicularis ENSP00000359319 I 0.968
PAX2 Microcebus murinus ENSMICG00000001357 I 0.968
PAX2 Dasypus novemcinctus ENSDNOG00000013328 I 0.968
PAX2 Equus caballus ENSECAG00000021123 I 0.968
PAX2 Felis catus ENSFCAG00000011602 I 0.968
PAX2 Cavia porcellus ENSCPOG00000000939 I 0.968
PAX2 Callithrix jacchus ENSCJAG00000017397 I 0.968
PAX2 Bos taurus ENSBTAG00000021566 I 0.968
PAX2 Canis familiaris ENSCAFG00000009709 I 0.968
PAX2 Gorilla gorilla ENSGGOG00000014908 I 0.968
PAX2 Erinaceus europaeus ENSEEUG00000001995 I 0.968
PAX2 Loxodonta africana ENSLAFG00000002388 I 0.968
PAX2 Echinops telfairi ENSETEG00000014765 I 0.967
PAX2 Myotis lucifugus ENSMLUG00000015106 I 0.967
ENSMEUG00000013247 Macropus eugenii ENSMEUG00000013247 I 0.962
ENSSHAG00000014328 Sarcophilus harrisii ENSSHAG00000014328 I 0.962
PAX2 Monodelphis domestica ENSMODG00000019353 I 0.962
Pvit_13858 Pogona vitticeps Pvit_13858 I 0.954
ENSLACG00000017470 Latimeria chalumnae ENSLACG00000017470 I 0.954
pax2.L Xenopus laevis XB-GENE-486805 I 0.948
CAA71206 Xenopus laevis CAA71206 I 0.942
CAA04222 Xenopus laevis CAA04222 I 0.941
ENSLOCG00000012825 Lepisosteus oculatus ENSLOCG00000012825 I 0.902
ENSAPLG00000014579 Anas platyrhynchos ENSAPLG00000014579 I 0.863
fgenesh2_kg.scaffold_131000004 Branchiostoma floridae fgenesh2_kg.scaffold_131000004 I 0.830
Sakowv30045649m.g Saccoglossus kowalevskii Sakowv30045649m.g I 0.791
XP_002159617.1 Hydra magnipapillata XP_002159617.1 N 0.725
ENSOARG00000015552 Ovis aries ENSOARG00000015552 I 0.725
NEMVEDRAFT_v1g168908 Nematostella vectensis NEMVEDRAFT_v1g168908 I 0.719
ENSXMAG00000014260 Xiphophorus maculatus ENSXMAG00000014260 I 0.712
ENSXMAG00000016421 Xiphophorus maculatus ENSXMAG00000016421 I 0.712
ENSONIG00000005541 Oreochromis niloticus ENSONIG00000005541 I 0.712
pax6b Oryzias latipes ENSORLG00000009913 I 0.712
pax6b Gasterosteus aculeatus ENSGACG00000016030 I 0.712
ENSPFOG00000016987 Poecilia formosa ENSPFOG00000016987 I 0.712
ENSONIG00000004074 Oreochromis niloticus ENSONIG00000004074 I 0.712
pax6b Tetraodon nigroviridis ENSTNIG00000013804 I 0.706
ENSGMOG00000012304 Gadus morhua ENSGMOG00000012304 I 0.706
pax6a Danio rerio ENSDARG00000103379 I 0.706
pax6b Danio rerio ENSDARG00000045936 I 0.706
ENSAMXG00000001228 Astyanax mexicanus ENSAMXG00000001228 I 0.706
pax6.S Xenopus laevis XB-GENE-6464331 I 0.706
ENSLACG00000015337 Latimeria chalumnae ENSLACG00000015337 I 0.706
ENSLOCG00000004578 Lepisosteus oculatus ENSLOCG00000004578 I 0.706
PAX6 Tupaia belangeri ENSTBEG00000004748 I 0.706
Alligator_sinensis_CCG012954.1 Alligator sinensis Alligator_sinensis_CCG012954.1 I 0.706
ENSORLG00000000847 Oryzias latipes ENSORLG00000000847 I 0.706
pax6b Takifugu rubripes ENSTRUG00000006935 I 0.706
Ogr12767 Ophisaurus gracilis Ogr12767 I 0.706
Cmyd_10016391 Chelonia mydas Cmyd_10016391 I 0.706