PAX4 (Equus caballus)
Homeodomain,Paired box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox)
PF00292 (PAX)
IPR001356
IPR001523
ENSECAG00000008343 T237319_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
PAX4
M00350_2.00
Homo sapiens
NNNATTAN

NTAATNNN
PBM
Barrera et al.(2016)
PAX4_REF
0.940 0.940
PAX4
M00351_2.00
Homo sapiens
NNNATTAN

NTAATNNN
PBM
Barrera et al.(2016)
PAX4_REF_R3
0.940 0.940
Pax4
M00542_2.00
Mus musculus
NNNATTAN

NTAATNNN
PBM
Berger et al.(2008)
Pax4_3989
0.940 0.940
PAX4
M03295_2.00
Homo sapiens
HKAATTAR

YTAATTMD
SELEX
Jolma et al.(2013)
PAX4_1
0.940 0.940
PAX4
M03296_2.00
Homo sapiens
YKAATTAV

BTAATTMR
SELEX
Jolma et al.(2013)
PAX4_2
0.940 0.940
PAX4
M03883_2.00
Homo sapiens
SGTCACGCWTSRNTG

CANYSAWGCGTGACS
SELEX
Nitta et al.(2015)
PAX4_1
0.940 0.940
PAX4
M03884_2.00
Homo sapiens
NNAATTANYKAATDMV

BKHATTMRNTAATTNN
SELEX
Nitta et al.(2015)
PAX4_2
0.940 0.940
PAX4
M05430_2.00
Homo sapiens
NAATTANNNNNNVNTAATTN

NAATTANBNNNNNNTAATTN
SELEX
Yin et al.(2017)
PAX4_eDBD_HT-SELEX_1
0.940 0.940
PAX4
M05431_2.00
Homo sapiens
NRYTWYACGCWTSRNYRNNYV

BRNNYRNYSAWGCGTRWARYN
SELEX
Yin et al.(2017)
PAX4_eDBD_HT-SELEX_2
0.940 0.940
PAX4
M05432_2.00
Homo sapiens
NTYACGCWYSRNYKMVYN

NRBKMRNYSRWGCGTRAN
SELEX
Yin et al.(2017)
PAX4_eDBD_HT-SELEX_3
0.940 0.940
PAX4
M05433_2.00
Homo sapiens
WHACGSTMATTDR

YHAATKASCGTDW
SELEX
Yin et al.(2017)
PAX4_eDBD_HT-SELEX_4
0.940 0.940
PAX4
M10811_2.00
Homo sapiens
NVNBSNNYVCGCHTSAMBNCN

NGNVKTSADGCGBRNNSVNBN
Transfac
Matys et al.(2006)
V$PAX4_01
0.940 0.940
PAX4
M10812_2.00
Homo sapiens
NAHWAATTDVV

BBHAATTWDTN
Transfac
Matys et al.(2006)
V$PAX4_02
0.940 0.940
PAX4
M10813_2.00
Homo sapiens
NDNNHYCACCCB

VGGGTGRDNNHN
Transfac
Matys et al.(2006)
V$PAX4_03
0.940 0.940
PAX4
M10814_2.00
Homo sapiens
RRAAAWWRNNHHNVHHNVHVNNHHSAYHSB

VSDRTSDDNNBDBNDDBNDDNNYWWTTTYY
Transfac
Matys et al.(2006)
V$PAX4_04
0.940 0.940
PAX4
M10815_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX4_Q2
0.940 0.940
PAX4
M05434_2.00
Homo sapiens
NHATTANBTAATDN

NHATTAVNTAATDN
SELEX
Yin et al.(2017)
PAX4_eDBD_Methyl-HT-SELEX_1
0.940 0.940
PAX4
M05435_2.00
Homo sapiens
VATTWYACGCWTSRNYDVNYN

NRNBHRNYSAWGCGTRWAATB
SELEX
Yin et al.(2017)
PAX4_eDBD_Methyl-HT-SELEX_2
0.940 0.940
PAX4
M05436_2.00
Homo sapiens
HTYACGCWTSANYGMNYN

NRNKCRNTSAWGCGTRAD
SELEX
Yin et al.(2017)
PAX4_eDBD_Methyl-HT-SELEX_3
0.940 0.940
PAX4
M05437_2.00
Homo sapiens
DHRYGCTAATTAN

NTAATTAGCRYDH
SELEX
Yin et al.(2017)
PAX4_eDBD_Methyl-HT-SELEX_4
0.940 0.940
PAX4
M00347_2.00
Homo sapiens
NNNATND

HNATNNN
PBM
Barrera et al.(2016)
PAX4_R183C
0.934 0.934
PAX4
M00348_2.00
Homo sapiens
NNDATTAN

NTAATHNN
PBM
Barrera et al.(2016)
PAX4_R192H
0.934 0.934
PAX4
M00349_2.00
Homo sapiens
NNNATTANN

NNTAATNNN
PBM
Barrera et al.(2016)
PAX4_R192S
0.934 0.934
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSECAP00000006440 Paired box 12 136
ENSECAP00000006440 Homeodomain 178 234

Links

Other Homeodomain,Paired box family TFs
Other Equus caballus TFs

Invalid Input OrderBy

42 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action