PAX4 (Erinaceus europaeus)
Homeodomain,Paired box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox)
PF00292 (PAX)
IPR001356
IPR001523
ENSEEUG00000009616 T237325_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
PAX4
M00350_2.00
Homo sapiens
NNNATTAN

NTAATNNN
PBM
Barrera et al.(2016)
PAX4_REF
0.928 0.928
PAX4
M00351_2.00
Homo sapiens
NNNATTAN

NTAATNNN
PBM
Barrera et al.(2016)
PAX4_REF_R3
0.928 0.928
Pax4
M00542_2.00
Mus musculus
NNNATTAN

NTAATNNN
PBM
Berger et al.(2008)
Pax4_3989
0.928 0.928
PAX4
M03295_2.00
Homo sapiens
HKAATTAR

YTAATTMD
SELEX
Jolma et al.(2013)
PAX4_1
0.928 0.928
PAX4
M03296_2.00
Homo sapiens
YKAATTAV

BTAATTMR
SELEX
Jolma et al.(2013)
PAX4_2
0.928 0.928
PAX4
M03883_2.00
Homo sapiens
SGTCACGCWTSRNTG

CANYSAWGCGTGACS
SELEX
Nitta et al.(2015)
PAX4_1
0.928 0.928
PAX4
M03884_2.00
Homo sapiens
NNAATTANYKAATDMV

BKHATTMRNTAATTNN
SELEX
Nitta et al.(2015)
PAX4_2
0.928 0.928
PAX4
M05430_2.00
Homo sapiens
NAATTANNNNNNVNTAATTN

NAATTANBNNNNNNTAATTN
SELEX
Yin et al.(2017)
PAX4_eDBD_HT-SELEX_1
0.928 0.928
PAX4
M05431_2.00
Homo sapiens
NRYTWYACGCWTSRNYRNNYV

BRNNYRNYSAWGCGTRWARYN
SELEX
Yin et al.(2017)
PAX4_eDBD_HT-SELEX_2
0.928 0.928
PAX4
M05432_2.00
Homo sapiens
NTYACGCWYSRNYKMVYN

NRBKMRNYSRWGCGTRAN
SELEX
Yin et al.(2017)
PAX4_eDBD_HT-SELEX_3
0.928 0.928
PAX4
M05433_2.00
Homo sapiens
WHACGSTMATTDR

YHAATKASCGTDW
SELEX
Yin et al.(2017)
PAX4_eDBD_HT-SELEX_4
0.928 0.928
PAX4
M10811_2.00
Homo sapiens
NVNBSNNYVCGCHTSAMBNCN

NGNVKTSADGCGBRNNSVNBN
Transfac
Matys et al.(2006)
V$PAX4_01
0.928 0.928
PAX4
M10812_2.00
Homo sapiens
NAHWAATTDVV

BBHAATTWDTN
Transfac
Matys et al.(2006)
V$PAX4_02
0.928 0.928
PAX4
M10813_2.00
Homo sapiens
NDNNHYCACCCB

VGGGTGRDNNHN
Transfac
Matys et al.(2006)
V$PAX4_03
0.928 0.928
PAX4
M10814_2.00
Homo sapiens
RRAAAWWRNNHHNVHHNVHVNNHHSAYHSB

VSDRTSDDNNBDBNDDBNDDNNYWWTTTYY
Transfac
Matys et al.(2006)
V$PAX4_04
0.928 0.928
PAX4
M10815_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX4_Q2
0.928 0.928
PAX4
M05434_2.00
Homo sapiens
NHATTANBTAATDN

NHATTAVNTAATDN
SELEX
Yin et al.(2017)
PAX4_eDBD_Methyl-HT-SELEX_1
0.928 0.928
PAX4
M05435_2.00
Homo sapiens
VATTWYACGCWTSRNYDVNYN

NRNBHRNYSAWGCGTRWAATB
SELEX
Yin et al.(2017)
PAX4_eDBD_Methyl-HT-SELEX_2
0.928 0.928
PAX4
M05436_2.00
Homo sapiens
HTYACGCWTSANYGMNYN

NRNKCRNTSAWGCGTRAD
SELEX
Yin et al.(2017)
PAX4_eDBD_Methyl-HT-SELEX_3
0.928 0.928
PAX4
M05437_2.00
Homo sapiens
DHRYGCTAATTAN

NTAATTAGCRYDH
SELEX
Yin et al.(2017)
PAX4_eDBD_Methyl-HT-SELEX_4
0.928 0.928
PAX4
M00347_2.00
Homo sapiens
NNNATND

HNATNNN
PBM
Barrera et al.(2016)
PAX4_R183C
0.923 0.923
PAX4
M00348_2.00
Homo sapiens
NNDATTAN

NTAATHNN
PBM
Barrera et al.(2016)
PAX4_R192H
0.923 0.923
PAX4
M00349_2.00
Homo sapiens
NNNATTANN

NNTAATNNN
PBM
Barrera et al.(2016)
PAX4_R192S
0.923 0.923
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSEEUP00000008769 Paired box 5 129
ENSEEUP00000008769 Homeodomain 169 224

Links

Other Homeodomain,Paired box family TFs
Other Erinaceus europaeus TFs

40 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
PAX4 Homo sapiens ENSG00000106331 D 0.945
Pax4 Mus musculus ENSMUSG00000029706 D 0.923
PAX4 Pteropus vampyrus ENSPVAG00000013944 I 0.945
PAX4 Pan troglodytes ENSPTRG00000019653 I 0.945
ENSPPYG00000017971 Pongo abelii ENSPPYG00000017971 I 0.940
PAX4 Procavia capensis ENSPCAG00000016257 I 0.940
PAX4 Ochotona princeps ENSOPRG00000013381 I 0.884
PAX4 Otolemur garnettii ENSOGAG00000013348 I 0.934
PAX4 Oryctolagus cuniculus ENSOCUG00000001612 I 0.956
ENSAMEG00000004648 Ailuropoda melanoleuca ENSAMEG00000004648 I 0.951
Pax4 Rattus norvegicus ENSRNOG00000008020 I 0.945
PAX4 Sorex araneus ENSSARG00000004842 I 0.912
ENSP00000368014 Macaca fascicularis ENSP00000368014 I 0.951
ENSBTAP00000042667-D1 Bos grunniens ENSBTAP00000042667-D1 I 0.939
Alligator_sinensis_CCG000926.1 Alligator sinensis Alligator_sinensis_CCG000926.1 I 0.717
Afo_R008534 Aptenodytes forsteri Afo_R008534 I 0.758
PAX4 Tursiops truncatus ENSTTRG00000006056 I 0.924
ENSSTOG00000002127 Ictidomys tridecemlineatus ENSSTOG00000002127 I 0.929
PAX4 Sus scrofa ENSSSCG00000016591 I 0.950
ENSSHAG00000015143 Sarcophilus harrisii ENSSHAG00000015143 I 0.841
ENSOARG00000001951 Ovis aries ENSOARG00000001951 I 0.945
PAX4 Ornithorhynchus anatinus ENSOANG00000000819 I 0.800
PAX4 Bos taurus ENSBTAG00000000410 I 0.934
PAX4 Canis familiaris ENSCAFG00000001719 I 0.951
PAX4 Choloepus hoffmanni ENSCHOG00000009265 I 0.907
PAX4 Callithrix jacchus ENSCJAG00000017652 I 0.951
PAX4 Cavia porcellus ENSCPOG00000006244 I 0.912
ENSCSAG00000010195 Chlorocebus sabaeus ENSCSAG00000010195 I 0.955
ENSDNOG00000030639 Dasypus novemcinctus ENSDNOG00000030639 I 0.840
Pax4 Dipodomys ordii ENSDORG00000000332 I 0.901
PAX4 Equus caballus ENSECAG00000008343 I 0.956
PAX4 Felis catus ENSFCAG00000005485 I 0.956
PAX4 Gorilla gorilla ENSGGOG00000002555 I 0.950
PAX4 Loxodonta africana ENSLAFG00000005297 I 0.942
PAX4 Microcebus murinus ENSMICG00000000095 I 0.951
PAX4 Myotis lucifugus ENSMLUG00000030302 I 0.801
PAX4 Macaca mulatta ENSMMUG00000015429 I 0.951
ENSMPUG00000006575 Mustela putorius furo ENSMPUG00000006575 I 0.940
ENSNLEG00000012257 Nomascus leucogenys ENSNLEG00000012257 I 0.950
Myotis_brandtii_Pax4_10010526 Myotis brandtii Myotis_brandtii_Pax4_10010526 I 0.945