PAX4 (Erinaceus europaeus)
Homeodomain,Paired box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox)
PF00292 (PAX)
IPR001356
IPR001523
ENSEEUG00000009616 T237325_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
PAX4
M00350_2.00
Homo sapiens
NNNATTAN

NTAATNNN
PBM
Barrera et al.(2016)
PAX4_REF
0.928 0.928
PAX4
M00351_2.00
Homo sapiens
NNNATTAN

NTAATNNN
PBM
Barrera et al.(2016)
PAX4_REF_R3
0.928 0.928
Pax4
M00542_2.00
Mus musculus
NNNATTAN

NTAATNNN
PBM
Berger et al.(2008)
Pax4_3989
0.928 0.928
PAX4
M03295_2.00
Homo sapiens
HKAATTAR

YTAATTMD
SELEX
Jolma et al.(2013)
PAX4_1
0.928 0.928
PAX4
M03296_2.00
Homo sapiens
YKAATTAV

BTAATTMR
SELEX
Jolma et al.(2013)
PAX4_2
0.928 0.928
PAX4
M03883_2.00
Homo sapiens
SGTCACGCWTSRNTG

CANYSAWGCGTGACS
SELEX
Nitta et al.(2015)
PAX4_1
0.928 0.928
PAX4
M03884_2.00
Homo sapiens
NNAATTANYKAATDMV

BKHATTMRNTAATTNN
SELEX
Nitta et al.(2015)
PAX4_2
0.928 0.928
PAX4
M05430_2.00
Homo sapiens
NAATTANNNNNNVNTAATTN

NAATTANBNNNNNNTAATTN
SELEX
Yin et al.(2017)
PAX4_eDBD_HT-SELEX_1
0.928 0.928
PAX4
M05431_2.00
Homo sapiens
NRYTWYACGCWTSRNYRNNYV

BRNNYRNYSAWGCGTRWARYN
SELEX
Yin et al.(2017)
PAX4_eDBD_HT-SELEX_2
0.928 0.928
PAX4
M05432_2.00
Homo sapiens
NTYACGCWYSRNYKMVYN

NRBKMRNYSRWGCGTRAN
SELEX
Yin et al.(2017)
PAX4_eDBD_HT-SELEX_3
0.928 0.928
PAX4
M05433_2.00
Homo sapiens
WHACGSTMATTDR

YHAATKASCGTDW
SELEX
Yin et al.(2017)
PAX4_eDBD_HT-SELEX_4
0.928 0.928
PAX4
M10811_2.00
Homo sapiens
NVNBSNNYVCGCHTSAMBNCN

NGNVKTSADGCGBRNNSVNBN
Transfac
Matys et al.(2006)
V$PAX4_01
0.928 0.928
PAX4
M10812_2.00
Homo sapiens
NAHWAATTDVV

BBHAATTWDTN
Transfac
Matys et al.(2006)
V$PAX4_02
0.928 0.928
PAX4
M10813_2.00
Homo sapiens
NDNNHYCACCCB

VGGGTGRDNNHN
Transfac
Matys et al.(2006)
V$PAX4_03
0.928 0.928
PAX4
M10814_2.00
Homo sapiens
RRAAAWWRNNHHNVHHNVHVNNHHSAYHSB

VSDRTSDDNNBDBNDDBNDDNNYWWTTTYY
Transfac
Matys et al.(2006)
V$PAX4_04
0.928 0.928
PAX4
M10815_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX4_Q2
0.928 0.928
PAX4
M05434_2.00
Homo sapiens
NHATTANBTAATDN

NHATTAVNTAATDN
SELEX
Yin et al.(2017)
PAX4_eDBD_Methyl-HT-SELEX_1
0.928 0.928
PAX4
M05435_2.00
Homo sapiens
VATTWYACGCWTSRNYDVNYN

NRNBHRNYSAWGCGTRWAATB
SELEX
Yin et al.(2017)
PAX4_eDBD_Methyl-HT-SELEX_2
0.928 0.928
PAX4
M05436_2.00
Homo sapiens
HTYACGCWTSANYGMNYN

NRNKCRNTSAWGCGTRAD
SELEX
Yin et al.(2017)
PAX4_eDBD_Methyl-HT-SELEX_3
0.928 0.928
PAX4
M05437_2.00
Homo sapiens
DHRYGCTAATTAN

NTAATTAGCRYDH
SELEX
Yin et al.(2017)
PAX4_eDBD_Methyl-HT-SELEX_4
0.928 0.928
PAX4
M00347_2.00
Homo sapiens
NNNATND

HNATNNN
PBM
Barrera et al.(2016)
PAX4_R183C
0.923 0.923
PAX4
M00348_2.00
Homo sapiens
NNDATTAN

NTAATHNN
PBM
Barrera et al.(2016)
PAX4_R192H
0.923 0.923
PAX4
M00349_2.00
Homo sapiens
NNNATTANN

NNTAATNNN
PBM
Barrera et al.(2016)
PAX4_R192S
0.923 0.923
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSEEUP00000008769 Paired box 5 129
ENSEEUP00000008769 Homeodomain 169 224

Links

Other Homeodomain,Paired box family TFs
Other Erinaceus europaeus TFs

40 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
F775_23096 Aegilops tauschii F775_23096 I 0.000
AMTR_s00006p00250310 Amborella trichopoda AMTR_s00006p00250310 I 0.000
Aquca_002_00952 Aquilegia coerulea Aquca_002_00952 I 0.000
Aquca_006_00387 Aquilegia coerulea Aquca_006_00387 I 0.000
BIM2 Arabidopsis lyrata fgenesh2_kg.2__1159__AT1G69010.1 I 0.000
BIM1 Arabidopsis lyrata scaffold_600819.1 I 0.000
BIM2 Arabidopsis thaliana AT1G69010 D 0.000
BIM1 Arabidopsis thaliana AT5G08130 D 0.000
Bostr.10273s0468 Boechera stricta Bostr.10273s0468 I 0.000
Bostr.13129s0152 Boechera stricta Bostr.13129s0152 I 0.000
BRADI3G38970 Brachypodium distachyon BRADI3G38970 I 0.000
BRADI4G32967 Brachypodium distachyon BRADI4G32967 I 0.000
BRADI3G56340 Brachypodium distachyon BRADI3G56340 I 0.000
Bo2g062560 Brassica oleracea Bo2g062560 I 0.000
Bo6g108530 Brassica oleracea Bo6g108530 I 0.000
Bo5g020460 Brassica oleracea Bo5g020460 I 0.000
Bo3g004690 Brassica oleracea Bo3g004690 I 0.000
Bo2g161110 Brassica oleracea Bo2g161110 I 0.000
Bo9g174770 Brassica oleracea Bo9g174770 I 0.000
Bra004355 Brassica rapa Bra004355 I 0.000
Bra005969 Brassica rapa Bra005969 I 0.000
Bra038332 Brassica rapa Bra038332 I 0.000
Bra029354 Brassica rapa Bra029354 I 0.000
Bra009322 Brassica rapa Bra009322 I 0.000
PK01364.1 Cannabis sativa PK01364.1 I 0.000
PK00238.1 Cannabis sativa PK00238.1 I 0.000
PK10562.1 Cannabis sativa PK10562.1 I 0.000
Cagra.1157s0023 Capsella grandiflora Cagra.1157s0023 I 0.000
Cagra.1365s0019 Capsella grandiflora Cagra.1365s0019 I 0.000
Carubv10020679m.g Capsella rubella Carubv10020679m.g I 0.000
Carubv10000655m.g Capsella rubella Carubv10000655m.g I 0.000
evm.TU.supercontig_3.225 Carica papaya evm.TU.supercontig_3.225 I 0.000
evm.TU.supercontig_289.6 Carica papaya evm.TU.supercontig_289.6 I 0.000
Ca_22043 Cicer arietinum Ca_22043 I 0.000
Cla018818 Citrullus lanatus Cla018818 I 0.000
Cla022382 Citrullus lanatus Cla022382 I 0.000
Ciclev10032020m.g Citrus clementina Ciclev10032020m.g I 0.000
Ciclev10020248m.g Citrus clementina Ciclev10020248m.g I 0.000
orange1.1g019960m.g Citrus sinensis orange1.1g019960m.g I 0.000
orange1.1g038451m.g Citrus sinensis orange1.1g038451m.g I 0.000
Cucsa.328060 Cucumis sativus Cucsa.328060 I 0.000
Cucsa.198520 Cucumis sativus Cucsa.198520 I 0.000
Cucsa.174600 Cucumis sativus Cucsa.174600 I 0.000
Cucsa.113490 Cucumis sativus Cucsa.113490 I 0.000
Eucgr.B03113 Eucalyptus grandis Eucgr.B03113 I 0.000
Eucgr.I02069 Eucalyptus grandis Eucgr.I02069 I 0.000
Eucgr.B00645 Eucalyptus grandis Eucgr.B00645 I 0.000
Thhalv10018889m.g Eutrema salsugineum Thhalv10018889m.g I 0.000
Thhalv10013181m.g Eutrema salsugineum Thhalv10013181m.g I 0.000
Thhalv10027863m.g Eutrema salsugineum Thhalv10027863m.g I 0.000
gene04534-v1.0-hybrid Fragaria vesca gene04534-v1.0-hybrid I 0.000
gene26139-v1.0-hybrid Fragaria vesca gene26139-v1.0-hybrid I 0.000
GLYMA05G07490 Glycine max GLYMA05G07490 I 0.000
GLYMA02G13670 Glycine max GLYMA02G13670 I 0.000
GLYMA08G28010 Glycine max GLYMA08G28010 I 0.000
GLYMA17G08980 Glycine max GLYMA17G08980 I 0.000
GLYMA18G51080 Glycine max GLYMA18G51080 I 0.000
GLYMA01G09010 Glycine max GLYMA01G09010 I 0.000
Gorai.001G197500 Gossypium raimondii Gorai.001G197500 I 0.000
Gorai.006G269200 Gossypium raimondii Gorai.006G269200 I 0.000
Gorai.007G040600 Gossypium raimondii Gorai.007G040600 I 0.000
Gorai.009G327300 Gossypium raimondii Gorai.009G327300 I 0.000
Gorai.013G098000 Gossypium raimondii Gorai.013G098000 I 0.000
MLOC_62335 Hordeum vulgare MLOC_62335 I 0.000
LPERR08G15680 Leersia perrieri LPERR08G15680 I 0.000
LPERR09G10080 Leersia perrieri LPERR09G10080 I 0.000
Lus10026684.g Linum usitatissimum Lus10026684.g I 0.000
Lus10013502.g Linum usitatissimum Lus10013502.g I 0.000
Lus10004630.g Linum usitatissimum Lus10004630.g I 0.000
Lus10007974.g Linum usitatissimum Lus10007974.g I 0.000
MDP0000261293 Malus domestica MDP0000261293 I 0.000
cassava29318.valid.m1 Manihot esculenta cassava29318.valid.m1 I 0.000
cassava29314.valid.m1 Manihot esculenta cassava29314.valid.m1 I 0.000
cassava43379.valid.m1 Manihot esculenta cassava43379.valid.m1 I 0.000
cassava43370.valid.m1 Manihot esculenta cassava43370.valid.m1 I 0.000
cassava15.valid.m1 Manihot esculenta cassava15.valid.m1 I 0.000
cassava14.valid.m1 Manihot esculenta cassava14.valid.m1 I 0.000
MTR_5g048350 Medicago truncatula MTR_5g048350 I 0.000
MTR_4g110040 Medicago truncatula MTR_4g110040 I 0.000
MTR_7g017320 Medicago truncatula MTR_7g017320 I 0.000
mgf011829m Mimulus guttatus mgf011829m I 0.000
mgf013208m Mimulus guttatus mgf013208m I 0.000
mgf001137m Mimulus guttatus mgf001137m I 0.000
mgf005849m Mimulus guttatus mgf005849m I 0.000
GSMUA_Achr4G19530_001 Musa acuminata GSMUA_Achr4G19530_001 I 0.000
GSMUA_Achr2G05450_001 Musa acuminata GSMUA_Achr2G05450_001 I 0.000
GSMUA_Achr3G10640_001 Musa acuminata GSMUA_Achr3G10640_001 I 0.000
GSMUA_Achr9G19110_001 Musa acuminata GSMUA_Achr9G19110_001 I 0.000
GSMUA_Achr9G28050_001 Musa acuminata GSMUA_Achr9G28050_001 I 0.000
OBART09G13850 Oryza barthii OBART09G13850 I 0.000
OB02G38020 Oryza brachyantha OB02G38020 I 0.000
OB08G25940 Oryza brachyantha OB08G25940 I 0.000
ORGLA02G0264700 Oryza glaberrima ORGLA02G0264700 I 0.000
ORGLA08G0164200 Oryza glaberrima ORGLA08G0164200 I 0.000
ORGLA06G0286200 Oryza glaberrima ORGLA06G0286200 I 0.000
ORGLA09G0105800 Oryza glaberrima ORGLA09G0105800 I 0.000
OGLUM09G14430 Oryza glumaepatula OGLUM09G14430 I 0.000
OGLUM08G19830 Oryza glumaepatula OGLUM08G19830 I 0.000
BGIOSGA005697 Oryza indica BGIOSGA005697 I 0.000
BGIOSGA028888 Oryza indica BGIOSGA028888 I 0.000
BGIOSGA030958 Oryza indica BGIOSGA030958 I 0.000
OLONG_020060 Oryza longistaminata OLONG_020060 I 0.000
OMERI09G10560 Oryza meridionalis OMERI09G10560 I 0.000
ONIVA08G20800 Oryza nivara ONIVA08G20800 I 0.000
ONIVA09G14370 Oryza nivara ONIVA09G14370 I 0.000
OPUNC08G16820 Oryza punctata OPUNC08G16820 I 0.000
OPUNC09G12310 Oryza punctata OPUNC09G12310 I 0.000
ORUFI09G14830 Oryza rufipogon ORUFI09G14830 I 0.000
ORUFI08G21030 Oryza rufipogon ORUFI08G21030 I 0.000
OS08G0490000 Oryza sativa OS08G0490000 I 0.000
OS09G0475400 Oryza sativa OS09G0475400 I 0.000
OS02G0726700 Oryza sativa OS02G0726700 I 0.000
Pavir.Aa00700 Panicum virgatum Pavir.Aa00700 I 0.000
Pavir.Ab03017 Panicum virgatum Pavir.Ab03017 I 0.000
Pavir.Fb01833 Panicum virgatum Pavir.Fb01833 I 0.000
Pavir.J04606 Panicum virgatum Pavir.J04606 I 0.000
Pavir.J38910 Panicum virgatum Pavir.J38910 I 0.000
gw1.90.123.1 Physcomitrella patens gw1.90.123.1 I 0.000
estExt_fgenesh1_pg.C_2110039 Physcomitrella patens estExt_fgenesh1_pg.C_2110039 I 0.000
fgenesh1_pg.scaffold_37000071 Physcomitrella patens fgenesh1_pg.scaffold_37000071 D 0.000
POPTR_0015s03550 Populus trichocarpa POPTR_0015s03550 I 0.000
POPTR_0004s11180 Populus trichocarpa POPTR_0004s11180 I 0.000
POPTR_0008s11120 Populus trichocarpa POPTR_0008s11120 I 0.000
POPTR_0010s14740 Populus trichocarpa POPTR_0010s14740 I 0.000
POPTR_0012s06650 Populus trichocarpa POPTR_0012s06650 I 0.000
POPTR_0017s13610 Populus trichocarpa POPTR_0017s13610 I 0.000
PRUPE_ppa008856mg Prunus persica PRUPE_ppa008856mg I 0.000
PRUPE_ppa008387mg Prunus persica PRUPE_ppa008387mg I 0.000
PRUPE_ppa003436mg Prunus persica PRUPE_ppa003436mg I 0.000
29790.m000843 Ricinus communis 29790.m000843 I 0.000
30138.m003899 Ricinus communis 30138.m003899 I 0.000
30138.m003913 Ricinus communis 30138.m003913 I 0.000
SapurV1A.2517s0020 Salix purpurea SapurV1A.2517s0020 I 0.000
SapurV1A.0868s0010 Salix purpurea SapurV1A.0868s0010 I 0.000
SapurV1A.0178s0150 Salix purpurea SapurV1A.0178s0150 I 0.000
SapurV1A.0084s0570 Salix purpurea SapurV1A.0084s0570 I 0.000
SapurV1A.0060s0510 Salix purpurea SapurV1A.0060s0510 I 0.000
SapurV1A.0274s0040 Salix purpurea SapurV1A.0274s0040 I 0.000
SELMODRAFT_451477 Selaginella moellendorffii SELMODRAFT_451477 I 0.000
SELMODRAFT_451475 Selaginella moellendorffii SELMODRAFT_451475 I 0.000
Si016505m.g Setaria italica Si016505m.g I 0.000
Si013622m.g Setaria italica Si013622m.g I 0.000
Si029604m.g Setaria italica Si029604m.g I 0.000
Solyc05g011810.2 Solanum lycopersicum Solyc05g011810.2 I 0.000
Solyc04g005280.2 Solanum lycopersicum Solyc04g005280.2 I 0.000
Solyc06g069370.2 Solanum lycopersicum Solyc06g069370.2 I 0.000
Solyc03g114720.2 Solanum lycopersicum Solyc03g114720.2 I 0.000
PGSC0003DMG400001919 Solanum tuberosum PGSC0003DMG400001919 I 0.000
PGSC0003DMG400019654 Solanum tuberosum PGSC0003DMG400019654 I 0.000
Sb04g029270 Sorghum bicolor Sb04g029270 I 0.000
Sb02g027460 Sorghum bicolor Sb02g027460 I 0.000
Sb07g028860 Sorghum bicolor Sb07g028860 I 0.000
TCM_019015 Theobroma cacao TCM_019015 I 0.000
TCM_011433 Theobroma cacao TCM_011433 I 0.000
TCM_014392 Theobroma cacao TCM_014392 I 0.000
Traes_6DL_D38F3257B Triticum aestivum Traes_6DL_D38F3257B I 0.000
Traes_5DL_E96693018 Triticum aestivum Traes_5DL_E96693018 I 0.000
Traes_5BL_AAC9C7238 Triticum aestivum Traes_5BL_AAC9C7238 I 0.000
Traes_5AL_0D4BDDDCD Triticum aestivum Traes_5AL_0D4BDDDCD I 0.000
Traes_6BL_DA93728B3 Triticum aestivum Traes_6BL_DA93728B3 I 0.000
BIM3 Vitis vinifera VIT_14s0083g00930 I 0.000
BIM1 Vitis vinifera VIT_17s0000g04790 I 0.000
BIM2 Vitis vinifera VIT_01s0010g00540 I 0.000
GRMZM2G089501 Zea mays GRMZM2G089501 I 0.000
GRMZM2G009478 Zea mays GRMZM2G009478 I 0.000
GRMZM2G317450 Zea mays GRMZM2G317450 I 0.000