CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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ENSFALG00000007308
(
Ficedula albicollis
)
Homeodomain,Paired box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00046 (Homeobox)
PF00292 (PAX)
IPR001356
IPR001523
ENSFALG00000007308
T237331_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Pax2
M02690_2.00
Mus musculus
NRTCAYKB
VMRTGAYN
SELEX
Mathelier et al.(2014)
MA0067.1
0.987
0.987
PAX2
M03294_2.00
Homo sapiens
SGTCACGCWTSRNTGVNY
RNBCANYSAWGCGTGACS
SELEX
Jolma et al.(2013)
PAX2_1
0.981
0.981
PAX2
M05428_2.00
Homo sapiens
NSGYYACGCNYSRNYRVNBN
NVNBYRNYSRNGCGTRRCSN
SELEX
Yin et al.(2017)
PAX2_eDBD_HT-SELEX
0.981
0.981
PAX2
M10808_2.00
Homo sapiens
NNHNRTYAHKBRHDMBBNN
NNVVKHDYVMDWRAYNDNN
Transfac
Matys et al.(2006)
V$PAX2_01
0.981
0.981
PAX2
M10809_2.00
Homo sapiens
NDSTTTNNN
NNNAAASHN
Transfac
Matys et al.(2006)
V$PAX2_02
0.981
0.981
PAX2
M10810_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX2_Q2
0.981
0.981
PAX2
M05429_2.00
Homo sapiens
NSGTCACGCWTSANYGVNYN
NRNBCRNTSAWGCGTGACSN
SELEX
Yin et al.(2017)
PAX2_eDBD_Methyl-HT-SELEX
0.981
0.981
PAX6
M00342_2.00
Homo sapiens
NNNRCDMATTANNN
NNNTAATKHGYNNN
PBM
Barrera et al.(2016)
PAX6_REF
0.718
0.718
Pax6
M00540_2.00
Mus musculus
CBAATTAA
TTAATTVG
PBM
Berger et al.(2008)
Pax6_3838
0.718
0.718
PAX6
M03291_2.00
Homo sapiens
DTWYACGCWTGANTGMDYH
DRHKCANTCAWGCGTRWAH
SELEX
Jolma et al.(2013)
PAX6_1
0.718
0.718
PAX6
M05412_2.00
Homo sapiens
NYACGCHYSRNYRMNYN
NRNKYRNYSRDGCGTRN
SELEX
Yin et al.(2017)
PAX6_eDBD_HT-SELEX
0.718
0.718
PAX6
M05414_2.00
Homo sapiens
NYRCGCNYSRNYRVNYN
NRNBYRNYSRNGCGYRN
SELEX
Yin et al.(2017)
PAX6_FL_HT-SELEX
0.718
0.718
PAX6
M02689_2.00
Homo sapiens
TTYACGCWTSANTK
MANTSAWGCGTRAA
SELEX
Mathelier et al.(2014)
MA0069.1
0.718
0.718
PAX6
M09216_2.00
Homo sapiens
TYMYRCWTSRNT
ANYSAWGYRKRA
Misc
Kulakovskiy et al.(2013)
PAX6_HUMAN.H11MO.0.C
0.718
0.718
Pax6
M09217_2.00
Mus musculus
TYMYRCWTSRNT
ANYSAWGYRKRA
Misc
Kulakovskiy et al.(2013)
PAX6_MOUSE.H11MO.0.C
0.718
0.718
PAX6
M10806_2.00
Homo sapiens
NHNNTTYACGCWTSANTKVHH
DDBMANTSAWGCGTRAANNDN
Transfac
Matys et al.(2006)
V$PAX6_01
0.718
0.718
PAX6
M10807_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX6_Q2
0.718
0.718
PAX6
M00336_2.00
Homo sapiens
RTGCACAC
GTGTGCAY
PBM
Barrera et al.(2016)
PAX6_F258S
0.718
0.718
PAX6
M00340_2.00
Homo sapiens
NNNNNRN
NYNNNNN
PBM
Barrera et al.(2016)
PAX6_R242T
0.718
0.718
PAX6
M00344_2.00
Homo sapiens
NNMSASGBYNNN
NNNRVCSTSKNN
PBM
Barrera et al.(2016)
PAX6_V126D
0.718
0.718
PAX6
M05413_2.00
Homo sapiens
DYRCGCWTSRNYRMNYN
NRNKYRNYSAWGCGYRH
SELEX
Yin et al.(2017)
PAX6_eDBD_Methyl-HT-SELEX
0.718
0.718
PAX6
M05415_2.00
Homo sapiens
NYACGCHYSRNYRMHYN
NRDKYRNYSRDGCGTRN
SELEX
Yin et al.(2017)
PAX6_FL_Methyl-HT-SELEX
0.718
0.718
PAX6
M00335_2.00
Homo sapiens
BRNNNNNN
NNNNNNYV
PBM
Barrera et al.(2016)
PAX6_A79E
0.712
0.712
PAX6
M00337_2.00
Homo sapiens
NMTAATTANNN
NNNTAATTAKN
PBM
Barrera et al.(2016)
PAX6_P118R
0.712
0.712
PAX6
M00338_2.00
Homo sapiens
WSGVRVDR
YHBYBCSW
PBM
Barrera et al.(2016)
PAX6_P68S
0.712
0.712
PAX6
M00339_2.00
Homo sapiens
NNNNSGKVGGHNN
NNDCCBMCSNNNN
PBM
Barrera et al.(2016)
PAX6_R128C
0.712
0.712
PAX6
M00341_2.00
Homo sapiens
BTSCCCSGSC
GSCSGGGSAV
PBM
Barrera et al.(2016)
PAX6_R26G
0.712
0.712
PAX6
M00343_2.00
Homo sapiens
NNNNCCCVKCNBN
NVNGMBGGGNNNN
PBM
Barrera et al.(2016)
PAX6_S119R
0.712
0.712
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSFALP00000007629
Paired box
15
139
RHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSVSSINRIIR
ENSFALP00000007629
Homeodomain
228
258
RGDTFTQQQLEALDRVFERPSYPDVFQTSEH
Links
Other
Homeodomain,Paired box
family TFs
Other
Ficedula albicollis
TFs
73 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Gfo_R002455
Geospiza fortis
Gfo_R002455
I
0.994
PAX2
Taeniopygia guttata
ENSTGUG00000007620
I
0.994
Pax2
Rattus norvegicus
ENSRNOG00000014253
I
0.987
ENSMEUG00000013247
Macropus eugenii
ENSMEUG00000013247
I
0.987
PAX2
Homo sapiens
ENSG00000075891
D
0.987
ENSSHAG00000014328
Sarcophilus harrisii
ENSSHAG00000014328
I
0.987
Pax2
Mus musculus
ENSMUSG00000004231
D
0.987
ENSMPUG00000016955
Mustela putorius furo
ENSMPUG00000016955
I
0.987
PAX2
Monodelphis domestica
ENSMODG00000019353
I
0.987
PAX2
Macaca mulatta
ENSMMUG00000009163
I
0.981
ENSAMEG00000017523
Ailuropoda melanoleuca
ENSAMEG00000017523
I
0.981
PAX2
Oryctolagus cuniculus
ENSOCUG00000012860
I
0.981
PAX2
Ochotona princeps
ENSOPRG00000007096
I
0.981
PAX2
Microcebus murinus
ENSMICG00000001357
I
0.981
PAX2
Pan troglodytes
ENSPTRG00000002853
I
0.981
ENSP00000359319-D1
Bos grunniens
ENSP00000359319-D1
I
0.981
ENSP00000359319
Macaca fascicularis
ENSP00000359319
I
0.981
Myotis_brandtii_PAX2_10025650
Myotis brandtii
Myotis_brandtii_PAX2_10025650
I
0.981
PAX2
Tursiops truncatus
ENSTTRG00000015106
I
0.981
PAX2
Sus scrofa
ENSSSCG00000010556
I
0.981
PAX2
Procavia capensis
ENSPCAG00000006623
I
0.981
ENSPPYG00000002572
Pongo abelii
ENSPPYG00000002572
I
0.981
PAX2
Pteropus vampyrus
ENSPVAG00000002148
I
0.981
ENSPANG00000021132
Papio anubis
ENSPANG00000021132
I
0.981
PAX2
Otolemur garnettii
ENSOGAG00000015274
I
0.981
PAX2
Canis familiaris
ENSCAFG00000009709
I
0.981
PAX2
Felis catus
ENSFCAG00000011602
I
0.981
PAX2
Erinaceus europaeus
ENSEEUG00000001995
I
0.981
PAX2
Callithrix jacchus
ENSCJAG00000017397
I
0.981
PAX2
Dasypus novemcinctus
ENSDNOG00000013328
I
0.981
PAX2
Equus caballus
ENSECAG00000021123
I
0.981
PAX2
Gorilla gorilla
ENSGGOG00000014908
I
0.981
PAX2
Cavia porcellus
ENSCPOG00000000939
I
0.981
PAX2
Bos taurus
ENSBTAG00000021566
I
0.981
PAX2
Loxodonta africana
ENSLAFG00000002388
I
0.981
Pax2
Dipodomys ordii
ENSDORG00000006193
I
0.974
ENSCSAG00000005568
Chlorocebus sabaeus
ENSCSAG00000005568
I
0.968
pax2.L
Xenopus laevis
XB-GENE-486805
I
0.968
ENSSTOG00000011575
Ictidomys tridecemlineatus
ENSSTOG00000011575
I
0.968
PAX2
Myotis lucifugus
ENSMLUG00000015106
I
0.962
CAA71206
Xenopus laevis
CAA71206
I
0.962
ENSLACG00000017470
Latimeria chalumnae
ENSLACG00000017470
I
0.962
PAX2
Echinops telfairi
ENSETEG00000014765
I
0.962
Pvit_13858
Pogona vitticeps
Pvit_13858
I
0.949
CAA04222
Xenopus laevis
CAA04222
I
0.936
ENSLOCG00000012825
Lepisosteus oculatus
ENSLOCG00000012825
I
0.910
ENSAPLG00000014579
Anas platyrhynchos
ENSAPLG00000014579
I
0.885
fgenesh2_kg.scaffold_131000004
Branchiostoma floridae
fgenesh2_kg.scaffold_131000004
I
0.840
Sakowv30045649m.g
Saccoglossus kowalevskii
Sakowv30045649m.g
I
0.808
ENSXMAG00000016421
Xiphophorus maculatus
ENSXMAG00000016421
I
0.724
ENSXMAG00000014260
Xiphophorus maculatus
ENSXMAG00000014260
I
0.724
pax6b
Oryzias latipes
ENSORLG00000009913
I
0.724
pax6b
Gasterosteus aculeatus
ENSGACG00000016030
I
0.724
ENSONIG00000004074
Oreochromis niloticus
ENSONIG00000004074
I
0.724
ENSONIG00000005541
Oreochromis niloticus
ENSONIG00000005541
I
0.724
ENSPFOG00000016987
Poecilia formosa
ENSPFOG00000016987
I
0.724
pax6.S
Xenopus laevis
XB-GENE-6464331
I
0.718
Ogr12767
Ophisaurus gracilis
Ogr12767
I
0.718
ENSAMXG00000001228
Astyanax mexicanus
ENSAMXG00000001228
I
0.718
pax6a
Danio rerio
ENSDARG00000103379
I
0.718
Alligator_sinensis_CCG012954.1
Alligator sinensis
Alligator_sinensis_CCG012954.1
I
0.718
ENSOARG00000015552
Ovis aries
ENSOARG00000015552
I
0.718
ENSGMOG00000012304
Gadus morhua
ENSGMOG00000012304
I
0.718
ENSLACG00000015337
Latimeria chalumnae
ENSLACG00000015337
I
0.718
ENSLOCG00000004578
Lepisosteus oculatus
ENSLOCG00000004578
I
0.718
ENSORLG00000000847
Oryzias latipes
ENSORLG00000000847
I
0.718
NEMVEDRAFT_v1g168908
Nematostella vectensis
NEMVEDRAFT_v1g168908
I
0.718
pax6b
Danio rerio
ENSDARG00000045936
I
0.718
PAX6
Tupaia belangeri
ENSTBEG00000004748
I
0.718
pax6.L
Xenopus laevis
XB-GENE-865046
I
0.712
PAX6
Homo sapiens
ENSG00000007372
D
0.712
ENSGACG00000002490
Gasterosteus aculeatus
ENSGACG00000002490
I
0.705
SMAR013763
Strigamia maritima
SMAR013763
I
0.705