ENSFALG00000007308 (Ficedula albicollis)
Homeodomain,Paired box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox)
PF00292 (PAX)
IPR001356
IPR001523
ENSFALG00000007308 T237331_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Pax2
M02690_2.00
Mus musculus
NRTCAYKB

VMRTGAYN
SELEX
Mathelier et al.(2014)
MA0067.1
0.987 0.987
PAX2
M03294_2.00
Homo sapiens
SGTCACGCWTSRNTGVNY

RNBCANYSAWGCGTGACS
SELEX
Jolma et al.(2013)
PAX2_1
0.981 0.981
PAX2
M05428_2.00
Homo sapiens
NSGYYACGCNYSRNYRVNBN

NVNBYRNYSRNGCGTRRCSN
SELEX
Yin et al.(2017)
PAX2_eDBD_HT-SELEX
0.981 0.981
PAX2
M10808_2.00
Homo sapiens
NNHNRTYAHKBRHDMBBNN

NNVVKHDYVMDWRAYNDNN
Transfac
Matys et al.(2006)
V$PAX2_01
0.981 0.981
PAX2
M10809_2.00
Homo sapiens
NDSTTTNNN

NNNAAASHN
Transfac
Matys et al.(2006)
V$PAX2_02
0.981 0.981
PAX2
M10810_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX2_Q2
0.981 0.981
PAX2
M05429_2.00
Homo sapiens
NSGTCACGCWTSANYGVNYN

NRNBCRNTSAWGCGTGACSN
SELEX
Yin et al.(2017)
PAX2_eDBD_Methyl-HT-SELEX
0.981 0.981
PAX6
M00342_2.00
Homo sapiens
NNNRCDMATTANNN

NNNTAATKHGYNNN
PBM
Barrera et al.(2016)
PAX6_REF
0.718 0.718
Pax6
M00540_2.00
Mus musculus
CBAATTAA

TTAATTVG
PBM
Berger et al.(2008)
Pax6_3838
0.718 0.718
PAX6
M03291_2.00
Homo sapiens
DTWYACGCWTGANTGMDYH

DRHKCANTCAWGCGTRWAH
SELEX
Jolma et al.(2013)
PAX6_1
0.718 0.718
PAX6
M05412_2.00
Homo sapiens
NYACGCHYSRNYRMNYN

NRNKYRNYSRDGCGTRN
SELEX
Yin et al.(2017)
PAX6_eDBD_HT-SELEX
0.718 0.718
PAX6
M05414_2.00
Homo sapiens
NYRCGCNYSRNYRVNYN

NRNBYRNYSRNGCGYRN
SELEX
Yin et al.(2017)
PAX6_FL_HT-SELEX
0.718 0.718
PAX6
M02689_2.00
Homo sapiens
TTYACGCWTSANTK

MANTSAWGCGTRAA
SELEX
Mathelier et al.(2014)
MA0069.1
0.718 0.718
PAX6
M09216_2.00
Homo sapiens
TYMYRCWTSRNT

ANYSAWGYRKRA
Misc
Kulakovskiy et al.(2013)
PAX6_HUMAN.H11MO.0.C
0.718 0.718
Pax6
M09217_2.00
Mus musculus
TYMYRCWTSRNT

ANYSAWGYRKRA
Misc
Kulakovskiy et al.(2013)
PAX6_MOUSE.H11MO.0.C
0.718 0.718
PAX6
M10806_2.00
Homo sapiens
NHNNTTYACGCWTSANTKVHH

DDBMANTSAWGCGTRAANNDN
Transfac
Matys et al.(2006)
V$PAX6_01
0.718 0.718
PAX6
M10807_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX6_Q2
0.718 0.718
PAX6
M00336_2.00
Homo sapiens
RTGCACAC

GTGTGCAY
PBM
Barrera et al.(2016)
PAX6_F258S
0.718 0.718
PAX6
M00340_2.00
Homo sapiens
NNNNNRN

NYNNNNN
PBM
Barrera et al.(2016)
PAX6_R242T
0.718 0.718
PAX6
M00344_2.00
Homo sapiens
NNMSASGBYNNN

NNNRVCSTSKNN
PBM
Barrera et al.(2016)
PAX6_V126D
0.718 0.718
PAX6
M05413_2.00
Homo sapiens
DYRCGCWTSRNYRMNYN

NRNKYRNYSAWGCGYRH
SELEX
Yin et al.(2017)
PAX6_eDBD_Methyl-HT-SELEX
0.718 0.718
PAX6
M05415_2.00
Homo sapiens
NYACGCHYSRNYRMHYN

NRDKYRNYSRDGCGTRN
SELEX
Yin et al.(2017)
PAX6_FL_Methyl-HT-SELEX
0.718 0.718
PAX6
M00335_2.00
Homo sapiens
BRNNNNNN

NNNNNNYV
PBM
Barrera et al.(2016)
PAX6_A79E
0.712 0.712
PAX6
M00337_2.00
Homo sapiens
NMTAATTANNN

NNNTAATTAKN
PBM
Barrera et al.(2016)
PAX6_P118R
0.712 0.712
PAX6
M00338_2.00
Homo sapiens
WSGVRVDR

YHBYBCSW
PBM
Barrera et al.(2016)
PAX6_P68S
0.712 0.712
PAX6
M00339_2.00
Homo sapiens
NNNNSGKVGGHNN

NNDCCBMCSNNNN
PBM
Barrera et al.(2016)
PAX6_R128C
0.712 0.712
PAX6
M00341_2.00
Homo sapiens
BTSCCCSGSC

GSCSGGGSAV
PBM
Barrera et al.(2016)
PAX6_R26G
0.712 0.712
PAX6
M00343_2.00
Homo sapiens
NNNNCCCVKCNBN

NVNGMBGGGNNNN
PBM
Barrera et al.(2016)
PAX6_S119R
0.712 0.712
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSFALP00000007629 Paired box 15 139
ENSFALP00000007629 Homeodomain 228 258

Links

Other Homeodomain,Paired box family TFs
Other Ficedula albicollis TFs

73 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ENSAMEG00000017523 Ailuropoda melanoleuca ENSAMEG00000017523 I 0.981
Alligator_sinensis_CCG012954.1 Alligator sinensis Alligator_sinensis_CCG012954.1 I 0.718
ENSAPLG00000014579 Anas platyrhynchos ENSAPLG00000014579 I 0.885
ENSAMXG00000001228 Astyanax mexicanus ENSAMXG00000001228 I 0.718
ENSP00000359319-D1 Bos grunniens ENSP00000359319-D1 I 0.981
PAX2 Bos taurus ENSBTAG00000021566 I 0.981
fgenesh2_kg.scaffold_131000004 Branchiostoma floridae fgenesh2_kg.scaffold_131000004 I 0.840
PAX2 Callithrix jacchus ENSCJAG00000017397 I 0.981
PAX2 Canis familiaris ENSCAFG00000009709 I 0.981
PAX2 Cavia porcellus ENSCPOG00000000939 I 0.981
ENSCSAG00000005568 Chlorocebus sabaeus ENSCSAG00000005568 I 0.968
pax6a Danio rerio ENSDARG00000103379 I 0.718
pax6b Danio rerio ENSDARG00000045936 I 0.718
PAX2 Dasypus novemcinctus ENSDNOG00000013328 I 0.981
Pax2 Dipodomys ordii ENSDORG00000006193 I 0.974
PAX2 Echinops telfairi ENSETEG00000014765 I 0.962
PAX2 Equus caballus ENSECAG00000021123 I 0.981
PAX2 Erinaceus europaeus ENSEEUG00000001995 I 0.981
PAX2 Felis catus ENSFCAG00000011602 I 0.981
ENSGMOG00000012304 Gadus morhua ENSGMOG00000012304 I 0.718
ENSGACG00000002490 Gasterosteus aculeatus ENSGACG00000002490 I 0.705
pax6b Gasterosteus aculeatus ENSGACG00000016030 I 0.724
Gfo_R002455 Geospiza fortis Gfo_R002455 I 0.994
PAX2 Gorilla gorilla ENSGGOG00000014908 I 0.981
PAX2 Homo sapiens ENSG00000075891 D 0.987
PAX6 Homo sapiens ENSG00000007372 D 0.712
ENSSTOG00000011575 Ictidomys tridecemlineatus ENSSTOG00000011575 I 0.968
ENSLACG00000017470 Latimeria chalumnae ENSLACG00000017470 I 0.962
ENSLACG00000015337 Latimeria chalumnae ENSLACG00000015337 I 0.718
ENSLOCG00000012825 Lepisosteus oculatus ENSLOCG00000012825 I 0.910
ENSLOCG00000004578 Lepisosteus oculatus ENSLOCG00000004578 I 0.718
PAX2 Loxodonta africana ENSLAFG00000002388 I 0.981
ENSP00000359319 Macaca fascicularis ENSP00000359319 I 0.981
PAX2 Macaca mulatta ENSMMUG00000009163 I 0.981
ENSMEUG00000013247 Macropus eugenii ENSMEUG00000013247 I 0.987
PAX2 Microcebus murinus ENSMICG00000001357 I 0.981
PAX2 Monodelphis domestica ENSMODG00000019353 I 0.987
ENSMPUG00000016955 Mustela putorius furo ENSMPUG00000016955 I 0.987
Pax2 Mus musculus ENSMUSG00000004231 D 0.987
Myotis_brandtii_PAX2_10025650 Myotis brandtii Myotis_brandtii_PAX2_10025650 I 0.981
PAX2 Myotis lucifugus ENSMLUG00000015106 I 0.962
NEMVEDRAFT_v1g168908 Nematostella vectensis NEMVEDRAFT_v1g168908 I 0.718
PAX2 Ochotona princeps ENSOPRG00000007096 I 0.981
Ogr12767 Ophisaurus gracilis Ogr12767 I 0.718
ENSONIG00000005541 Oreochromis niloticus ENSONIG00000005541 I 0.724
ENSONIG00000004074 Oreochromis niloticus ENSONIG00000004074 I 0.724
PAX2 Oryctolagus cuniculus ENSOCUG00000012860 I 0.981
pax6b Oryzias latipes ENSORLG00000009913 I 0.724
ENSORLG00000000847 Oryzias latipes ENSORLG00000000847 I 0.718
PAX2 Otolemur garnettii ENSOGAG00000015274 I 0.981
ENSOARG00000015552 Ovis aries ENSOARG00000015552 I 0.718
PAX2 Pan troglodytes ENSPTRG00000002853 I 0.981
ENSPANG00000021132 Papio anubis ENSPANG00000021132 I 0.981
ENSPFOG00000016987 Poecilia formosa ENSPFOG00000016987 I 0.724
Pvit_13858 Pogona vitticeps Pvit_13858 I 0.949
ENSPPYG00000002572 Pongo abelii ENSPPYG00000002572 I 0.981
PAX2 Procavia capensis ENSPCAG00000006623 I 0.981
PAX2 Pteropus vampyrus ENSPVAG00000002148 I 0.981
Pax2 Rattus norvegicus ENSRNOG00000014253 I 0.987
Sakowv30045649m.g Saccoglossus kowalevskii Sakowv30045649m.g I 0.808
ENSSHAG00000014328 Sarcophilus harrisii ENSSHAG00000014328 I 0.987
SMAR013763 Strigamia maritima SMAR013763 I 0.705
PAX2 Sus scrofa ENSSSCG00000010556 I 0.981
PAX2 Taeniopygia guttata ENSTGUG00000007620 I 0.994
PAX6 Tupaia belangeri ENSTBEG00000004748 I 0.718
PAX2 Tursiops truncatus ENSTTRG00000015106 I 0.981
pax6.S Xenopus laevis XB-GENE-6464331 I 0.718
pax2.L Xenopus laevis XB-GENE-486805 I 0.968
CAA71206 Xenopus laevis CAA71206 I 0.962
CAA04222 Xenopus laevis CAA04222 I 0.936
pax6.L Xenopus laevis XB-GENE-865046 I 0.712
ENSXMAG00000016421 Xiphophorus maculatus ENSXMAG00000016421 I 0.724
ENSXMAG00000014260 Xiphophorus maculatus ENSXMAG00000014260 I 0.724