CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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PAX4
(
Homo sapiens
)
Homeodomain,Paired box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00046 (Homeobox)
PF00292 (PAX)
IPR001356
IPR001523
ENSG00000106331
T237342_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
PAX4
M00347_2.00
Homo sapiens
NNNATND
HNATNNN
PBM
Barrera et al.(2016)
PAX4_R183C
(Direct)
(Direct)
PAX4
M00348_2.00
Homo sapiens
NNDATTAN
NTAATHNN
PBM
Barrera et al.(2016)
PAX4_R192H
(Direct)
(Direct)
PAX4
M00349_2.00
Homo sapiens
NNNATTANN
NNTAATNNN
PBM
Barrera et al.(2016)
PAX4_R192S
(Direct)
(Direct)
PAX4
M00350_2.00
Homo sapiens
NNNATTAN
NTAATNNN
PBM
Barrera et al.(2016)
PAX4_REF
(Direct)
(Direct)
PAX4
M00351_2.00
Homo sapiens
NNNATTAN
NTAATNNN
PBM
Barrera et al.(2016)
PAX4_REF_R3
(Direct)
(Direct)
PAX4
M03295_2.00
Homo sapiens
HKAATTAR
YTAATTMD
SELEX
Jolma et al.(2013)
PAX4_1
(Direct)
(Direct)
PAX4
M03296_2.00
Homo sapiens
YKAATTAV
BTAATTMR
SELEX
Jolma et al.(2013)
PAX4_2
(Direct)
(Direct)
PAX4
M03883_2.00
Homo sapiens
SGTCACGCWTSRNTG
CANYSAWGCGTGACS
SELEX
Nitta et al.(2015)
PAX4_1
(Direct)
(Direct)
PAX4
M03884_2.00
Homo sapiens
NNAATTANYKAATDMV
BKHATTMRNTAATTNN
SELEX
Nitta et al.(2015)
PAX4_2
(Direct)
(Direct)
PAX4
M05430_2.00
Homo sapiens
NAATTANNNNNNVNTAATTN
NAATTANBNNNNNNTAATTN
SELEX
Yin et al.(2017)
PAX4_eDBD_HT-SELEX_1
(Direct)
(Direct)
PAX4
M05431_2.00
Homo sapiens
NRYTWYACGCWTSRNYRNNYV
BRNNYRNYSAWGCGTRWARYN
SELEX
Yin et al.(2017)
PAX4_eDBD_HT-SELEX_2
(Direct)
(Direct)
PAX4
M05432_2.00
Homo sapiens
NTYACGCWYSRNYKMVYN
NRBKMRNYSRWGCGTRAN
SELEX
Yin et al.(2017)
PAX4_eDBD_HT-SELEX_3
(Direct)
(Direct)
PAX4
M05433_2.00
Homo sapiens
WHACGSTMATTDR
YHAATKASCGTDW
SELEX
Yin et al.(2017)
PAX4_eDBD_HT-SELEX_4
(Direct)
(Direct)
PAX4
M05434_2.00
Homo sapiens
NHATTANBTAATDN
NHATTAVNTAATDN
SELEX
Yin et al.(2017)
PAX4_eDBD_Methyl-HT-SELEX_1
(Direct)
(Direct)
PAX4
M05435_2.00
Homo sapiens
VATTWYACGCWTSRNYDVNYN
NRNBHRNYSAWGCGTRWAATB
SELEX
Yin et al.(2017)
PAX4_eDBD_Methyl-HT-SELEX_2
(Direct)
(Direct)
PAX4
M05436_2.00
Homo sapiens
HTYACGCWTSANYGMNYN
NRNKCRNTSAWGCGTRAD
SELEX
Yin et al.(2017)
PAX4_eDBD_Methyl-HT-SELEX_3
(Direct)
(Direct)
PAX4
M05437_2.00
Homo sapiens
DHRYGCTAATTAN
NTAATTAGCRYDH
SELEX
Yin et al.(2017)
PAX4_eDBD_Methyl-HT-SELEX_4
(Direct)
(Direct)
PAX4
M10811_2.00
Homo sapiens
NVNBSNNYVCGCHTSAMBNCN
NGNVKTSADGCGBRNNSVNBN
Transfac
Matys et al.(2006)
V$PAX4_01
(Direct)
(Direct)
PAX4
M10812_2.00
Homo sapiens
NAHWAATTDVV
BBHAATTWDTN
Transfac
Matys et al.(2006)
V$PAX4_02
(Direct)
(Direct)
PAX4
M10813_2.00
Homo sapiens
NDNNHYCACCCB
VGGGTGRDNNHN
Transfac
Matys et al.(2006)
V$PAX4_03
(Direct)
(Direct)
PAX4
M10814_2.00
Homo sapiens
RRAAAWWRNNHHNVHHNVHVNNHHSAYHSB
VSDRTSDDNNBDBNDDBNDDNNYWWTTTYY
Transfac
Matys et al.(2006)
V$PAX4_04
(Direct)
(Direct)
PAX4
M10815_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX4_Q2
(Direct)
(Direct)
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Pax4
M00542_2.00
Mus musculus
NNNATTAN
NTAATNNN
PBM
Berger et al.(2008)
Pax4_3989
0.921
0.921
PAX6
M00342_2.00
Homo sapiens
NNNRCDMATTANNN
NNNTAATKHGYNNN
PBM
Barrera et al.(2016)
PAX6_REF
0.702
0.702
Pax6
M00540_2.00
Mus musculus
CBAATTAA
TTAATTVG
PBM
Berger et al.(2008)
Pax6_3838
0.702
0.702
PAX6
M03291_2.00
Homo sapiens
DTWYACGCWTGANTGMDYH
DRHKCANTCAWGCGTRWAH
SELEX
Jolma et al.(2013)
PAX6_1
0.702
0.702
PAX6
M05412_2.00
Homo sapiens
NYACGCHYSRNYRMNYN
NRNKYRNYSRDGCGTRN
SELEX
Yin et al.(2017)
PAX6_eDBD_HT-SELEX
0.702
0.702
PAX6
M05414_2.00
Homo sapiens
NYRCGCNYSRNYRVNYN
NRNBYRNYSRNGCGYRN
SELEX
Yin et al.(2017)
PAX6_FL_HT-SELEX
0.702
0.702
PAX6
M02689_2.00
Homo sapiens
TTYACGCWTSANTK
MANTSAWGCGTRAA
SELEX
Mathelier et al.(2014)
MA0069.1
0.702
0.702
PAX6
M09216_2.00
Homo sapiens
TYMYRCWTSRNT
ANYSAWGYRKRA
Misc
Kulakovskiy et al.(2013)
PAX6_HUMAN.H11MO.0.C
0.702
0.702
Pax6
M09217_2.00
Mus musculus
TYMYRCWTSRNT
ANYSAWGYRKRA
Misc
Kulakovskiy et al.(2013)
PAX6_MOUSE.H11MO.0.C
0.702
0.702
PAX6
M10806_2.00
Homo sapiens
NHNNTTYACGCWTSANTKVHH
DDBMANTSAWGCGTRAANNDN
Transfac
Matys et al.(2006)
V$PAX6_01
0.702
0.702
PAX6
M10807_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX6_Q2
0.702
0.702
PAX6
M00340_2.00
Homo sapiens
NNNNNRN
NYNNNNN
PBM
Barrera et al.(2016)
PAX6_R242T
0.702
0.702
PAX6
M05413_2.00
Homo sapiens
DYRCGCWTSRNYRMNYN
NRNKYRNYSAWGCGYRH
SELEX
Yin et al.(2017)
PAX6_eDBD_Methyl-HT-SELEX
0.702
0.702
PAX6
M05415_2.00
Homo sapiens
NYACGCHYSRNYRMHYN
NRDKYRNYSRDGCGTRN
SELEX
Yin et al.(2017)
PAX6_FL_Methyl-HT-SELEX
0.702
0.702
For this family, TFs with SR scores >
0.700
will likely have a similar motif
Experimental Constructs
Motif ID
Domain
From
To
Sequence
M00347_2.00
Paired box
1
121
MNQLGGLFVNGRPLPLDTRQQIVRLAVSGMRPCDISRILKVSNGCVSKILGRYYRTGVLEPKGIGGSKPRLATPPVVARIAQLKGECPALFAWEIQRQLCAEGLCTQDKTPSVSSINRVLR
M00347_2.00
Homeodomain
163
219
HRNRTIFSPSQAEALEKEFQCGQYPDSVARGKLATATSLPEDTVRVWFSNRRAKWRR
M00348_2.00
Paired box
1
121
MNQLGGLFVNGRPLPLDTRQQIVRLAVSGMRPCDISRILKVSNGCVSKILGRYYRTGVLEPKGIGGSKPRLATPPVVARIAQLKGECPALFAWEIQRQLCAEGLCTQDKTPSVSSINRVLR
M00348_2.00
Homeodomain
163
219
HRNRTIFSPSQAEALEKEFQRGQYPDSVAHGKLATATSLPEDTVRVWFSNRRAKWRR
M00349_2.00
Paired box
1
121
MNQLGGLFVNGRPLPLDTRQQIVRLAVSGMRPCDISRILKVSNGCVSKILGRYYRTGVLEPKGIGGSKPRLATPPVVARIAQLKGECPALFAWEIQRQLCAEGLCTQDKTPSVSSINRVLR
M00349_2.00
Homeodomain
163
219
HRNRTIFSPSQAEALEKEFQRGQYPDSVASGKLATATSLPEDTVRVWFSNRRAKWRR
M00350_2.00
Paired box
1
121
MNQLGGLFVNGRPLPLDTRQQIVRLAVSGMRPCDISRILKVSNGCVSKILGRYYRTGVLEPKGIGGSKPRLATPPVVARIAQLKGECPALFAWEIQRQLCAEGLCTQDKTPSVSSINRVLR
M00350_2.00
Homeodomain
163
219
HRNRTIFSPSQAEALEKEFQRGQYPDSVARGKLATATSLPEDTVRVWFSNRRAKWRR
M00351_2.00
Paired box
1
121
MNQLGGLFVNGRPLPLDTRQQIVRLAVSGMRPCDISRILKVSNGCVSKILGRYYRTGVLEPKGIGGSKPRLATPPVVARIAQLKGECPALFAWEIQRQLCAEGLCTQDKTPSVSSINRVLR
M00351_2.00
Homeodomain
163
219
HRNRTIFSPSQAEALEKEFQRGQYPDSVARGKLATATSLPEDTVRVWFSNRRAKWRR
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSP00000339906
Paired box
1
121
MNQLGGLFVNGRPLPLDTRQQIVRLAVSGMRPCDISRILKVSNGCVSKILGRYYRTGVLEPKGIGGSKPRLATPPVVARIAQLKGECPALFAWEIQRQLCAEGLCTQDKTPSVSSINRVLR
ENSP00000339906
Homeodomain
163
219
HRNRTIFSPSQAEALEKEFQRGQYPDSVARGKLATATSLPEDTVRVWFSNRRAKWRR
ENSP00000344297
Paired box
5
129
GISSMNQLGGLFVNGRPLPLDTRQQIVRLAVSGMRPCDISRILKVSNGCVSKILGRYYRTGVLEPKGIGGSKPRLATPPVVARIAQLKGECPALFAWEIQRQLCAEGLCTQDKTPSVSSINRVLR
ENSP00000344297
Homeodomain
171
227
HRNRTIFSPSQAEALEKEFQRGQYPDSVARGKLATATSLPEDTVRVWFSNRRAKWRR
ENSP00000368014
Paired box
1
121
MNQLGGLFVNGRPLPLDTRQQIVRLAVSGMRPCDISRILKVSNGCVSKILGRYYRTGVLEPKGIGGSKPRLATPPVVARIAQLKGECPALFAWEIQRQLCAEGLCTQDKTPSVSSINRVLR
ENSP00000368014
Homeodomain
163
219
HRNRTIFSPSQAEALEKEFQRGQYPDSVARGKLATATSLPEDTVRVWFSNRRAKWRR
ENSP00000451923
Paired box
18
119
RDTLLPSAHHASPVPASHLTQVSNGCVSKILGRYYRTGVLEPKGIGGSKPRLATPPVVARIAQLKGECPALFAWEIQRQLCAEGLCTQDKTPSVSSINRVLR
ENSP00000451923
Homeodomain
161
217
HRNRTIFSPSQAEALEKEFQRGQYPDSVARGKLATATSLPEDTVRVWFSNRRAKWRR
ENSP00000473846
Paired box
18
119
RDTLLPSAHHASPVPASHLTQVSNGCVSKILGRYYRTGVLEPKGIGGSKPRLATPPVVARIAQLKGECPALFAWEIQRQLCAEGLCTQDKTPSVSSINRVLR
ENSP00000473846
Homeodomain
161
217
HRNRTIFSPSQAEALEKEFQRGQYPDSVARGKLATATSLPEDTVRVWFSNRRAKWRR
ENSP00000477877
Paired box
18
119
RDTLLPSAHHASPVPASHLTQVSNGCVSKILGRYYRTGVLEPKGIGGSKPRLATPPVVARIAQLKGECPALFAWEIQRQLCAEGLCTQDKTPSVSSINRVLR
ENSP00000477877
Homeodomain
161
217
HRNRTIFSPSQAEALEKEFQRGQYPDSVARGKLATATSLPEDTVRVWFSNRRAKWRR
Links
Other
Homeodomain,Paired box
family TFs
Other
Homo sapiens
TFs
86 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy