PAX6 (Gorilla gorilla)
Homeodomain,Paired box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox)
PF00292 (PAX)
IPR001356
IPR001523
ENSGGOG00000010246 T237355_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
PAX6
M00342_2.00
Homo sapiens
NNNRCDMATTANNN

NNNTAATKHGYNNN
PBM
Barrera et al.(2016)
PAX6_REF
0.995 0.995
Pax6
M00540_2.00
Mus musculus
CBAATTAA

TTAATTVG
PBM
Berger et al.(2008)
Pax6_3838
0.995 0.995
PAX6
M03291_2.00
Homo sapiens
DTWYACGCWTGANTGMDYH

DRHKCANTCAWGCGTRWAH
SELEX
Jolma et al.(2013)
PAX6_1
1.000 1.000
PAX6
M05412_2.00
Homo sapiens
NYACGCHYSRNYRMNYN

NRNKYRNYSRDGCGTRN
SELEX
Yin et al.(2017)
PAX6_eDBD_HT-SELEX
1.000 1.000
PAX6
M05414_2.00
Homo sapiens
NYRCGCNYSRNYRVNYN

NRNBYRNYSRNGCGYRN
SELEX
Yin et al.(2017)
PAX6_FL_HT-SELEX
1.000 1.000
PAX6
M02689_2.00
Homo sapiens
TTYACGCWTSANTK

MANTSAWGCGTRAA
SELEX
Mathelier et al.(2014)
MA0069.1
0.995 0.995
PAX6
M09216_2.00
Homo sapiens
TYMYRCWTSRNT

ANYSAWGYRKRA
Misc
Kulakovskiy et al.(2013)
PAX6_HUMAN.H11MO.0.C
0.995 0.995
Pax6
M09217_2.00
Mus musculus
TYMYRCWTSRNT

ANYSAWGYRKRA
Misc
Kulakovskiy et al.(2013)
PAX6_MOUSE.H11MO.0.C
0.995 0.995
PAX6
M10806_2.00
Homo sapiens
NHNNTTYACGCWTSANTKVHH

DDBMANTSAWGCGTRAANNDN
Transfac
Matys et al.(2006)
V$PAX6_01
0.995 0.995
PAX6
M10807_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX6_Q2
0.995 0.995
PAX6
M05413_2.00
Homo sapiens
DYRCGCWTSRNYRMNYN

NRNKYRNYSAWGCGYRH
SELEX
Yin et al.(2017)
PAX6_eDBD_Methyl-HT-SELEX
1.000 1.000
PAX6
M05415_2.00
Homo sapiens
NYACGCHYSRNYRMHYN

NRDKYRNYSRDGCGTRN
SELEX
Yin et al.(2017)
PAX6_FL_Methyl-HT-SELEX
1.000 1.000
PAX6
M00335_2.00
Homo sapiens
BRNNNNNN

NNNNNNYV
PBM
Barrera et al.(2016)
PAX6_A79E
0.995 0.995
PAX6
M00336_2.00
Homo sapiens
RTGCACAC

GTGTGCAY
PBM
Barrera et al.(2016)
PAX6_F258S
0.989 0.989
PAX6
M00337_2.00
Homo sapiens
NMTAATTANNN

NNNTAATTAKN
PBM
Barrera et al.(2016)
PAX6_P118R
0.989 0.989
PAX6
M00338_2.00
Homo sapiens
WSGVRVDR

YHBYBCSW
PBM
Barrera et al.(2016)
PAX6_P68S
0.989 0.989
PAX6
M00339_2.00
Homo sapiens
NNNNSGKVGGHNN

NNDCCBMCSNNNN
PBM
Barrera et al.(2016)
PAX6_R128C
0.989 0.989
PAX6
M00340_2.00
Homo sapiens
NNNNNRN

NYNNNNN
PBM
Barrera et al.(2016)
PAX6_R242T
0.989 0.989
PAX6
M00341_2.00
Homo sapiens
BTSCCCSGSC

GSCSGGGSAV
PBM
Barrera et al.(2016)
PAX6_R26G
0.995 0.995
PAX6
M00343_2.00
Homo sapiens
NNNNCCCVKCNBN

NVNGMBGGGNNNN
PBM
Barrera et al.(2016)
PAX6_S119R
0.995 0.995
PAX6
M00344_2.00
Homo sapiens
NNMSASGBYNNN

NNNRVCSTSKNN
PBM
Barrera et al.(2016)
PAX6_V126D
0.995 0.995
ey
M03896_2.00
Drosophila melanogaster
CKAATTAD

HTAATTMG
SELEX
Nitta et al.(2015)
ey_1
0.940 0.940
ey
M03897_2.00
Drosophila melanogaster
HTAATCKMATTAD

HTAATKMGATTAD
SELEX
Nitta et al.(2015)
ey_2
0.940 0.940
ey
M03898_2.00
Drosophila melanogaster
WAAYYRRTTN

NAAYYRRTTW
SELEX
Nitta et al.(2015)
ey_3
0.940 0.940
toy
M03899_2.00
Drosophila melanogaster
TTYACGCWTGASTGMACAN

NTGTKCASTCAWGCGTRAA
SELEX
Nitta et al.(2015)
toy_1
0.912 0.912
toy
M03900_2.00
Drosophila melanogaster
NTYACGCWTSAVTGMRCNN

NNGYKCABTSAWGCGTRAN
SELEX
Nitta et al.(2015)
toy_2
0.912 0.912
toy
M03901_2.00
Drosophila melanogaster
VATTANBHAYGSWYSRN

NYSRWSCRTDVNTAATB
SELEX
Nitta et al.(2015)
toy_3
0.907 0.907
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSGGOP00000009998 Paired box 11 135
ENSGGOP00000009998 Homeodomain 218 274
ENSGGOP00000018131 Paired box 4 142
ENSGGOP00000018131 Homeodomain 225 281

Links

Other Homeodomain,Paired box family TFs
Other Gorilla gorilla TFs

239 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
GPRI1 Arabidopsis thaliana AT2G20570 D 0.000
APRR2 Arabidopsis thaliana AT4G18020 D 0.000
TRAES3BF062500050CFD_g Triticum aestivum TRAES3BF062500050CFD_g I 0.000
Aquca_044_00072 Aquilegia coerulea Aquca_044_00072 I 0.000
mgf014879m Mimulus guttatus mgf014879m I 0.000
mgf012846m Mimulus guttatus mgf012846m I 0.000
mgf007181m Mimulus guttatus mgf007181m I 0.000
mgf004257m Mimulus guttatus mgf004257m I 0.000
fgenesh1_pm.scaffold_311000005 Physcomitrella patens fgenesh1_pm.scaffold_311000005 I 0.000
Aquca_051_00026 Aquilegia coerulea Aquca_051_00026 I 0.000
Bostr.3148s0040 Boechera stricta Bostr.3148s0040 I 0.000
Bostr.7903s0106 Boechera stricta Bostr.7903s0106 I 0.000
Cagra.0381s0008 Capsella grandiflora Cagra.0381s0008 I 0.000
Cagra.2516s0014 Capsella grandiflora Cagra.2516s0014 I 0.000
Carubv10014114m.g Capsella rubella Carubv10014114m.g I 0.000
Carubv10026528m.g Capsella rubella Carubv10026528m.g I 0.000
Ciclev10007648m.g Citrus clementina Ciclev10007648m.g I 0.000
estExt_gwp_gw1.C_310256 Physcomitrella patens estExt_gwp_gw1.C_310256 I 0.000
Cucsa.321580 Cucumis sativus Cucsa.321580 I 0.000
Traes_7DL_58DDB90E3 Triticum aestivum Traes_7DL_58DDB90E3 I 0.000
TRIUR3_15856 Triticum urartu TRIUR3_15856 I 0.000
GPRI1 Vitis vinifera VIT_12s0028g03100 I 0.000
Ca_02452 Cicer arietinum Ca_02452 I 0.000
Ca_11268 Cicer arietinum Ca_11268 I 0.000
Cla003791 Citrullus lanatus Cla003791 I 0.000
Cla008926 Citrullus lanatus Cla008926 I 0.000
Pm014123 Prunus mume Pm014123 I 0.000
Pm014733 Prunus mume Pm014733 I 0.000
29983.m003131 Ricinus communis 29983.m003131 I 0.000
cassava43649.valid.m1 Manihot esculenta cassava43649.valid.m1 I 0.000
cassava43650.valid.m1 Manihot esculenta cassava43650.valid.m1 I 0.000
cassava9823.m1 Manihot esculenta cassava9823.m1 I 0.000
Cucsa.087530 Cucumis sativus Cucsa.087530 I 0.000
Ciclev10015266m.g Citrus clementina Ciclev10015266m.g I 0.000
Ciclev10031120m.g Citrus clementina Ciclev10031120m.g I 0.000
orange1.1g008254m.g Citrus sinensis orange1.1g008254m.g I 0.000
orange1.1g013528m.g Citrus sinensis orange1.1g013528m.g I 0.000
Pavir.Db01285 Panicum virgatum Pavir.Db01285 I 0.000
Pavir.Ea00014 Panicum virgatum Pavir.Ea00014 I 0.000
Pavir.Eb00063 Panicum virgatum Pavir.Eb00063 I 0.000
Pavir.J11422 Panicum virgatum Pavir.J11422 I 0.000
SapurV1A.0118s0260 Salix purpurea SapurV1A.0118s0260 I 0.000
SapurV1A.0693s0070 Salix purpurea SapurV1A.0693s0070 I 0.000
Thhalv10001986m.g Eutrema salsugineum Thhalv10001986m.g I 0.000
Thhalv10003223m.g Eutrema salsugineum Thhalv10003223m.g I 0.000
PK19826.1 Cannabis sativa PK19826.1 I 0.000
PK27491.1 Cannabis sativa PK27491.1 I 0.000
chr3.CM0160.680.nd Lotus japonicus chr3.CM0160.680.nd I 0.000
PDK_20s1585631g001 Phoenix dactylifera PDK_20s1585631g001 I 0.000
orange1.1g005719m.g Citrus sinensis orange1.1g005719m.g I 0.000
MDP0000526864 Malus domestica MDP0000526864 I 0.000
Eucgr.A01857 Eucalyptus grandis Eucgr.A01857 I 0.000
Eucgr.E00308 Eucalyptus grandis Eucgr.E00308 I 0.000
Eucgr.K01056 Eucalyptus grandis Eucgr.K01056 I 0.000
gene10484-v1.0-hybrid Fragaria vesca gene10484-v1.0-hybrid I 0.000
gene17750-v1.0-hybrid Fragaria vesca gene17750-v1.0-hybrid I 0.000
Gorai.002G020300 Gossypium raimondii Gorai.002G020300 I 0.000
Gorai.008G155000 Gossypium raimondii Gorai.008G155000 I 0.000
Gorai.012G126600 Gossypium raimondii Gorai.012G126600 I 0.000
Lus10018649.g Linum usitatissimum Lus10018649.g I 0.000
Lus10033642.g Linum usitatissimum Lus10033642.g I 0.000
Lus10039883.g Linum usitatissimum Lus10039883.g I 0.000
Lus10040109.g Linum usitatissimum Lus10040109.g I 0.000
MDP0000225179 Malus domestica MDP0000225179 I 0.000
MDP0000237396 Malus domestica MDP0000237396 I 0.000
PDK_20s1662851g001 Phoenix dactylifera PDK_20s1662851g001 I 0.000
AMTR_s00058p00133630 Amborella trichopoda AMTR_s00058p00133630 I 0.000
GLYMA06G44330 Glycine max GLYMA06G44330 I 0.000
GLYMA12G13430 Glycine max GLYMA12G13430 I 0.000
GLYMA12G33430 Glycine max GLYMA12G33430 I 0.000
GLYMA13G37010 Glycine max GLYMA13G37010 I 0.000
GRMZM2G026833 Zea mays GRMZM2G026833 I 0.000
GRMZM2G087804 Zea mays GRMZM2G087804 I 0.000
GSMUA_Achr10G26160_001 Musa acuminata GSMUA_Achr10G26160_001 I 0.000
GSMUA_Achr2G15250_001 Musa acuminata GSMUA_Achr2G15250_001 I 0.000
GSMUA_Achr6G05850_001 Musa acuminata GSMUA_Achr6G05850_001 I 0.000
GSMUA_Achr7G11040_001 Musa acuminata GSMUA_Achr7G11040_001 I 0.000
LPERR01G08320 Leersia perrieri LPERR01G08320 I 0.000
LPERR06G12880 Leersia perrieri LPERR06G12880 I 0.000
MLOC_43537 Hordeum vulgare MLOC_43537 I 0.000
MLOC_65876 Hordeum vulgare MLOC_65876 I 0.000
fgenesh2_kg.8__391__AT5G44190.1 Arabidopsis lyrata fgenesh2_kg.8__391__AT5G44190.1 I 0.000
APRR2 Arabidopsis lyrata fgenesh2_kg.7__2503__AT4G18020.2 I 0.000
GLK2 Arabidopsis thaliana AT5G44190 I 0.000
BGIOSGA002040 Oryza indica BGIOSGA002040 I 0.000
BGIOSGA022875 Oryza indica BGIOSGA022875 I 0.000
Bo7g003410 Brassica oleracea Bo7g003410 I 0.000
Bo7g067200 Brassica oleracea Bo7g067200 I 0.000
Bo8g102300 Brassica oleracea Bo8g102300 I 0.000
Bra031129 Brassica rapa Bra031129 I 0.000
Bra033726 Brassica rapa Bra033726 I 0.000
Bra036015 Brassica rapa Bra036015 I 0.000
Bra036482 Brassica rapa Bra036482 I 0.000
BRADI1G43710 Brachypodium distachyon BRADI1G43710 I 0.000
BRADI2G08287 Brachypodium distachyon BRADI2G08287 I 0.000
F775_20285 Aegilops tauschii F775_20285 I 0.000
GPRI1 Arabidopsis lyrata fgenesh2_kg.3__3588__AT2G20570.1 I 0.000
MTR_2g090675 Medicago truncatula MTR_2g090675 I 0.000
MTR_4g078810 Medicago truncatula MTR_4g078810 I 0.000
GLK1 Oryza sativa OS06G0348800 I 0.000
PGSC0003DMG400009378 Solanum tuberosum PGSC0003DMG400009378 I 0.000
PGSC0003DMG400021857 Solanum tuberosum PGSC0003DMG400021857 I 0.000
POPTR_0007s01230 Populus trichocarpa POPTR_0007s01230 I 0.000
POPTR_0017s04720 Populus trichocarpa POPTR_0017s04720 I 0.000
PRUPE_ppa004161mg Prunus persica PRUPE_ppa004161mg I 0.000
PRUPE_ppa014599mg Prunus persica PRUPE_ppa014599mg I 0.000
Sb03g000400 Sorghum bicolor Sb03g000400 I 0.000
Sb10g008400 Sorghum bicolor Sb10g008400 I 0.000
SELMODRAFT_428906 Selaginella moellendorffii SELMODRAFT_428906 I 0.000
Si001336m.g Setaria italica Si001336m.g I 0.000
Si006400m.g Setaria italica Si006400m.g I 0.000
Solyc07g053630.2 Solanum lycopersicum Solyc07g053630.2 I 0.000
TCM_008193 Theobroma cacao TCM_008193 I 0.000
GLK2 Oryza sativa OS01G0239000 I 0.000
ORUFI06G15000 Oryza rufipogon ORUFI06G15000 I 0.000
OB01G18980 Oryza brachyantha OB01G18980 I 0.000
OB06G22250 Oryza brachyantha OB06G22250 I 0.000
OBART03G02540 Oryza barthii OBART03G02540 I 0.000
OGLUM01G10130 Oryza glumaepatula OGLUM01G10130 I 0.000
OGLUM06G15080 Oryza glumaepatula OGLUM06G15080 I 0.000
OMERI01G08840 Oryza meridionalis OMERI01G08840 I 0.000
OMERI06G15340 Oryza meridionalis OMERI06G15340 I 0.000
ONIVA01G11450 Oryza nivara ONIVA01G11450 I 0.000
ONIVA06G16920 Oryza nivara ONIVA06G16920 I 0.000
OPUNC01G08680 Oryza punctata OPUNC01G08680 I 0.000
OPUNC06G13180 Oryza punctata OPUNC06G13180 I 0.000
ORGLA01G0079000 Oryza glaberrima ORGLA01G0079000 I 0.000
ORGLA06G0126200 Oryza glaberrima ORGLA06G0126200 I 0.000
ORUFI01G09620 Oryza rufipogon ORUFI01G09620 I 0.000
TCM_015780 Theobroma cacao TCM_015780 I 0.000