ENSLACG00000017470 (Latimeria chalumnae)
Homeodomain,Paired box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox)
PF00292 (PAX) 		IPR001356
IPR001523 		ENSLACG00000017470 T237366_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PAX2
M03294_2.00 		Homo sapiens
SGTCACGCWTSRNTGVNY
RNBCANYSAWGCGTGACS		 SELEX
Jolma et al.(2013)
PAX2_1 		0.938 0.938
PAX2
M05428_2.00 		Homo sapiens
NSGYYACGCNYSRNYRVNBN
NVNBYRNYSRNGCGTRRCSN		 SELEX
Yin et al.(2017)
PAX2_eDBD_HT-SELEX 		0.938 0.938
PAX2
M10808_2.00 		Homo sapiens
NNHNRTYAHKBRHDMBBNN
NNVVKHDYVMDWRAYNDNN		 Transfac
Matys et al.(2006)
V$PAX2_01 		0.938 0.938
PAX2
M10809_2.00 		Homo sapiens
NDSTTTNNN
NNNAAASHN		 Transfac
Matys et al.(2006)
V$PAX2_02 		0.938 0.938
PAX2
M10810_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PAX2_Q2 		0.938 0.938
PAX2
M05429_2.00 		Homo sapiens
NSGTCACGCWTSANYGVNYN
NRNBCRNTSAWGCGTGACSN		 SELEX
Yin et al.(2017)
PAX2_eDBD_Methyl-HT-SELEX 		0.938 0.938
Pax2
M02690_2.00 		Mus musculus
NRTCAYKB
VMRTGAYN		 SELEX
Mathelier et al.(2014)
MA0067.1 		0.932 0.932
PAX6
M00342_2.00 		Homo sapiens
NNNRCDMATTANNN
NNNTAATKHGYNNN		 PBM
Barrera et al.(2016)
PAX6_REF 		0.708 0.708
Pax6
M00540_2.00 		Mus musculus
CBAATTAA
TTAATTVG		 PBM
Berger et al.(2008)
Pax6_3838 		0.708 0.708
PAX6
M03291_2.00 		Homo sapiens
DTWYACGCWTGANTGMDYH
DRHKCANTCAWGCGTRWAH		 SELEX
Jolma et al.(2013)
PAX6_1 		0.708 0.708
PAX6
M05412_2.00 		Homo sapiens
NYACGCHYSRNYRMNYN
NRNKYRNYSRDGCGTRN		 SELEX
Yin et al.(2017)
PAX6_eDBD_HT-SELEX 		0.708 0.708
PAX6
M05414_2.00 		Homo sapiens
NYRCGCNYSRNYRVNYN
NRNBYRNYSRNGCGYRN		 SELEX
Yin et al.(2017)
PAX6_FL_HT-SELEX 		0.708 0.708
PAX6
M02689_2.00 		Homo sapiens
TTYACGCWTSANTK
MANTSAWGCGTRAA		 SELEX
Mathelier et al.(2014)
MA0069.1 		0.708 0.708
PAX6
M09216_2.00 		Homo sapiens
TYMYRCWTSRNT
ANYSAWGYRKRA		 Misc
Kulakovskiy et al.(2013)
PAX6_HUMAN.H11MO.0.C 		0.708 0.708
Pax6
M09217_2.00 		Mus musculus
TYMYRCWTSRNT
ANYSAWGYRKRA		 Misc
Kulakovskiy et al.(2013)
PAX6_MOUSE.H11MO.0.C 		0.708 0.708
PAX6
M10806_2.00 		Homo sapiens
NHNNTTYACGCWTSANTKVHH
DDBMANTSAWGCGTRAANNDN		 Transfac
Matys et al.(2006)
V$PAX6_01 		0.708 0.708
PAX6
M10807_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PAX6_Q2 		0.708 0.708
PAX6
M00336_2.00 		Homo sapiens
RTGCACAC
GTGTGCAY		 PBM
Barrera et al.(2016)
PAX6_F258S 		0.708 0.708
PAX6
M00340_2.00 		Homo sapiens
NNNNNRN
NYNNNNN		 PBM
Barrera et al.(2016)
PAX6_R242T 		0.708 0.708
PAX6
M00344_2.00 		Homo sapiens
NNMSASGBYNNN
NNNRVCSTSKNN		 PBM
Barrera et al.(2016)
PAX6_V126D 		0.708 0.708
PAX6
M05413_2.00 		Homo sapiens
DYRCGCWTSRNYRMNYN
NRNKYRNYSAWGCGYRH		 SELEX
Yin et al.(2017)
PAX6_eDBD_Methyl-HT-SELEX 		0.708 0.708
PAX6
M05415_2.00 		Homo sapiens
NYACGCHYSRNYRMHYN
NRDKYRNYSRDGCGTRN		 SELEX
Yin et al.(2017)
PAX6_FL_Methyl-HT-SELEX 		0.708 0.708
PAX6
M00335_2.00 		Homo sapiens
BRNNNNNN
NNNNNNYV		 PBM
Barrera et al.(2016)
PAX6_A79E 		0.702 0.702
PAX6
M00337_2.00 		Homo sapiens
NMTAATTANNN
NNNTAATTAKN		 PBM
Barrera et al.(2016)
PAX6_P118R 		0.702 0.702
PAX6
M00338_2.00 		Homo sapiens
WSGVRVDR
YHBYBCSW		 PBM
Barrera et al.(2016)
PAX6_P68S 		0.702 0.702
PAX6
M00339_2.00 		Homo sapiens
NNNNSGKVGGHNN
NNDCCBMCSNNNN		 PBM
Barrera et al.(2016)
PAX6_R128C 		0.702 0.702
PAX6
M00341_2.00 		Homo sapiens
BTSCCCSGSC
GSCSGGGSAV		 PBM
Barrera et al.(2016)
PAX6_R26G 		0.702 0.702
PAX6
M00343_2.00 		Homo sapiens
NNNNCCCVKCNBN
NVNGMBGGGNNNN		 PBM
Barrera et al.(2016)
PAX6_S119R 		0.702 0.702
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSLACP00000019870 Paired box 5 129
ENSLACP00000019870 Homeodomain 218 254

Links

Other Homeodomain,Paired box family TFs
Other Latimeria chalumnae TFs

68 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PAX2 Echinops telfairi ENSETEG00000014765 I 0.987
ENSMEUG00000013247 Macropus eugenii ENSMEUG00000013247 I 0.974
PAX2 Monodelphis domestica ENSMODG00000019353 I 0.974
ENSSHAG00000014328 Sarcophilus harrisii ENSSHAG00000014328 I 0.974
PAX2 Microcebus murinus ENSMICG00000001357 I 0.968
ENSPANG00000021132 Papio anubis ENSPANG00000021132 I 0.968
PAX2 Procavia capensis ENSPCAG00000006623 I 0.968
Myotis_brandtii_PAX2_10025650 Myotis brandtii Myotis_brandtii_PAX2_10025650 I 0.968
PAX2 Loxodonta africana ENSLAFG00000002388 I 0.968
PAX2 Sus scrofa ENSSSCG00000010556 I 0.968
PAX2 Macaca mulatta ENSMMUG00000009163 I 0.968
Pax2 Mus musculus ENSMUSG00000004231 D 0.968
ENSP00000359319-D1 Bos grunniens ENSP00000359319-D1 I 0.968
PAX2 Ochotona princeps ENSOPRG00000007096 I 0.968
PAX2 Tursiops truncatus ENSTTRG00000015106 I 0.968
ENSP00000359319 Macaca fascicularis ENSP00000359319 I 0.968
PAX2 Otolemur garnettii ENSOGAG00000015274 I 0.968
ENSAMEG00000017523 Ailuropoda melanoleuca ENSAMEG00000017523 I 0.968
PAX2 Oryctolagus cuniculus ENSOCUG00000012860 I 0.968
ENSPPYG00000002572 Pongo abelii ENSPPYG00000002572 I 0.968
PAX2 Pan troglodytes ENSPTRG00000002853 I 0.968
PAX2 Gorilla gorilla ENSGGOG00000014908 I 0.968
PAX2 Canis familiaris ENSCAFG00000009709 I 0.968
PAX2 Dasypus novemcinctus ENSDNOG00000013328 I 0.968
pax2.L Xenopus laevis XB-GENE-486805 I 0.968
PAX2 Callithrix jacchus ENSCJAG00000017397 I 0.968
PAX2 Cavia porcellus ENSCPOG00000000939 I 0.968
PAX2 Erinaceus europaeus ENSEEUG00000001995 I 0.968
PAX2 Equus caballus ENSECAG00000021123 I 0.968
PAX2 Pteropus vampyrus ENSPVAG00000002148 I 0.968
PAX2 Homo sapiens ENSG00000075891 D 0.968
CAA04222 Xenopus laevis CAA04222 I 0.968
PAX2 Bos taurus ENSBTAG00000021566 I 0.968
PAX2 Felis catus ENSFCAG00000011602 I 0.968
Pax2 Rattus norvegicus ENSRNOG00000014253 I 0.962
CAA71206 Xenopus laevis CAA71206 I 0.962
ENSMPUG00000016955 Mustela putorius furo ENSMPUG00000016955 I 0.962
ENSFALG00000007308 Ficedula albicollis ENSFALG00000007308 I 0.962
Pax2 Dipodomys ordii ENSDORG00000006193 I 0.954
PAX2 Taeniopygia guttata ENSTGUG00000007620 I 0.938
Gfo_R002455 Geospiza fortis Gfo_R002455 I 0.938
Pvit_13858 Pogona vitticeps Pvit_13858 I 0.936
ENSSTOG00000011575 Ictidomys tridecemlineatus ENSSTOG00000011575 I 0.921
ENSCSAG00000005568 Chlorocebus sabaeus ENSCSAG00000005568 I 0.921
PAX2 Myotis lucifugus ENSMLUG00000015106 I 0.919
ENSLOCG00000012825 Lepisosteus oculatus ENSLOCG00000012825 I 0.882
ENSAPLG00000014579 Anas platyrhynchos ENSAPLG00000014579 I 0.832
Sakowv30045649m.g Saccoglossus kowalevskii Sakowv30045649m.g I 0.783
fgenesh2_kg.scaffold_131000004 Branchiostoma floridae fgenesh2_kg.scaffold_131000004 I 0.766
ENSOARG00000015552 Ovis aries ENSOARG00000015552 I 0.742
ENSONIG00000004074 Oreochromis niloticus ENSONIG00000004074 I 0.714
pax6b Gasterosteus aculeatus ENSGACG00000016030 I 0.714
ENSPFOG00000016987 Poecilia formosa ENSPFOG00000016987 I 0.714
ENSONIG00000005541 Oreochromis niloticus ENSONIG00000005541 I 0.714
pax6a Danio rerio ENSDARG00000103379 I 0.714
pax6b Oryzias latipes ENSORLG00000009913 I 0.714
pax6.S Xenopus laevis XB-GENE-6464331 I 0.708
pax6b Danio rerio ENSDARG00000045936 I 0.708
ENSGMOG00000012304 Gadus morhua ENSGMOG00000012304 I 0.708
ENSLACG00000015337 Latimeria chalumnae ENSLACG00000015337 I 0.708
Alligator_sinensis_CCG012954.1 Alligator sinensis Alligator_sinensis_CCG012954.1 I 0.708
Ogr12767 Ophisaurus gracilis Ogr12767 I 0.708
PAX6 Tupaia belangeri ENSTBEG00000004748 I 0.708
ENSLOCG00000004578 Lepisosteus oculatus ENSLOCG00000004578 I 0.708
ENSORLG00000000847 Oryzias latipes ENSORLG00000000847 I 0.708
pax6.L Xenopus laevis XB-GENE-865046 I 0.702
PAX6 Homo sapiens ENSG00000007372 D 0.702
ENSGACG00000002490 Gasterosteus aculeatus ENSGACG00000002490 I 0.702