CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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PAX4
(
Loxodonta africana
)
Homeodomain,Paired box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00046 (Homeobox)
PF00292 (PAX)
IPR001356
IPR001523
ENSLAFG00000005297
T237369_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
PAX4
M00350_2.00
Homo sapiens
NNNATTAN
NTAATNNN
PBM
Barrera et al.(2016)
PAX4_REF
0.953
0.953
PAX4
M00351_2.00
Homo sapiens
NNNATTAN
NTAATNNN
PBM
Barrera et al.(2016)
PAX4_REF_R3
0.953
0.953
PAX4
M03295_2.00
Homo sapiens
HKAATTAR
YTAATTMD
SELEX
Jolma et al.(2013)
PAX4_1
0.953
0.953
PAX4
M03296_2.00
Homo sapiens
YKAATTAV
BTAATTMR
SELEX
Jolma et al.(2013)
PAX4_2
0.953
0.953
PAX4
M03883_2.00
Homo sapiens
SGTCACGCWTSRNTG
CANYSAWGCGTGACS
SELEX
Nitta et al.(2015)
PAX4_1
0.953
0.953
PAX4
M03884_2.00
Homo sapiens
NNAATTANYKAATDMV
BKHATTMRNTAATTNN
SELEX
Nitta et al.(2015)
PAX4_2
0.953
0.953
PAX4
M05430_2.00
Homo sapiens
NAATTANNNNNNVNTAATTN
NAATTANBNNNNNNTAATTN
SELEX
Yin et al.(2017)
PAX4_eDBD_HT-SELEX_1
0.953
0.953
PAX4
M05431_2.00
Homo sapiens
NRYTWYACGCWTSRNYRNNYV
BRNNYRNYSAWGCGTRWARYN
SELEX
Yin et al.(2017)
PAX4_eDBD_HT-SELEX_2
0.953
0.953
PAX4
M05432_2.00
Homo sapiens
NTYACGCWYSRNYKMVYN
NRBKMRNYSRWGCGTRAN
SELEX
Yin et al.(2017)
PAX4_eDBD_HT-SELEX_3
0.953
0.953
PAX4
M05433_2.00
Homo sapiens
WHACGSTMATTDR
YHAATKASCGTDW
SELEX
Yin et al.(2017)
PAX4_eDBD_HT-SELEX_4
0.953
0.953
PAX4
M10811_2.00
Homo sapiens
NVNBSNNYVCGCHTSAMBNCN
NGNVKTSADGCGBRNNSVNBN
Transfac
Matys et al.(2006)
V$PAX4_01
0.953
0.953
PAX4
M10812_2.00
Homo sapiens
NAHWAATTDVV
BBHAATTWDTN
Transfac
Matys et al.(2006)
V$PAX4_02
0.953
0.953
PAX4
M10813_2.00
Homo sapiens
NDNNHYCACCCB
VGGGTGRDNNHN
Transfac
Matys et al.(2006)
V$PAX4_03
0.953
0.953
PAX4
M10814_2.00
Homo sapiens
RRAAAWWRNNHHNVHHNVHVNNHHSAYHSB
VSDRTSDDNNBDBNDDBNDDNNYWWTTTYY
Transfac
Matys et al.(2006)
V$PAX4_04
0.953
0.953
PAX4
M10815_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX4_Q2
0.953
0.953
PAX4
M05434_2.00
Homo sapiens
NHATTANBTAATDN
NHATTAVNTAATDN
SELEX
Yin et al.(2017)
PAX4_eDBD_Methyl-HT-SELEX_1
0.953
0.953
PAX4
M05435_2.00
Homo sapiens
VATTWYACGCWTSRNYDVNYN
NRNBHRNYSAWGCGTRWAATB
SELEX
Yin et al.(2017)
PAX4_eDBD_Methyl-HT-SELEX_2
0.953
0.953
PAX4
M05436_2.00
Homo sapiens
HTYACGCWTSANYGMNYN
NRNKCRNTSAWGCGTRAD
SELEX
Yin et al.(2017)
PAX4_eDBD_Methyl-HT-SELEX_3
0.953
0.953
PAX4
M05437_2.00
Homo sapiens
DHRYGCTAATTAN
NTAATTAGCRYDH
SELEX
Yin et al.(2017)
PAX4_eDBD_Methyl-HT-SELEX_4
0.953
0.953
PAX4
M00347_2.00
Homo sapiens
NNNATND
HNATNNN
PBM
Barrera et al.(2016)
PAX4_R183C
0.947
0.947
PAX4
M00348_2.00
Homo sapiens
NNDATTAN
NTAATHNN
PBM
Barrera et al.(2016)
PAX4_R192H
0.947
0.947
PAX4
M00349_2.00
Homo sapiens
NNNATTANN
NNTAATNNN
PBM
Barrera et al.(2016)
PAX4_R192S
0.947
0.947
Pax4
M00542_2.00
Mus musculus
NNNATTAN
NTAATNNN
PBM
Berger et al.(2008)
Pax4_3989
0.924
0.924
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSLAFP00000004435
Paired box
5
129
GISSMNQLGGLFVNGRPLPLDTRQQIVRLAVSGMRPCDISRSLKVSNGCVSKILGRYYRTGVLEPKGIGGSKPRLATPPVVARIAQLKGECPALFAWEIQRQLRAEGLCTQDKTPSVSSINRVLR
ENSLAFP00000004435
Homeodomain
171
216
HRNRTIFSPGQAEALEKEFQRGQYPDSVARGKLAAATSLPEDTVRV
Links
Other
Homeodomain,Paired box
family TFs
Other
Loxodonta africana
TFs
38 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
PAX4
Gorilla gorilla
ENSGGOG00000002555
I
0.982
ENSNLEG00000012257
Nomascus leucogenys
ENSNLEG00000012257
I
0.982
PAX4
Homo sapiens
ENSG00000106331
D
0.977
PAX4
Pan troglodytes
ENSPTRG00000019653
I
0.977
PAX4
Callithrix jacchus
ENSCJAG00000017652
I
0.971
Myotis_brandtii_Pax4_10010526
Myotis brandtii
Myotis_brandtii_Pax4_10010526
I
0.971
PAX4
Sus scrofa
ENSSSCG00000016591
I
0.971
PAX4
Felis catus
ENSFCAG00000005485
I
0.965
PAX4
Oryctolagus cuniculus
ENSOCUG00000001612
I
0.965
PAX4
Ochotona princeps
ENSOPRG00000013381
I
0.965
ENSBTAP00000042667-D1
Bos grunniens
ENSBTAP00000042667-D1
I
0.965
PAX4
Cavia porcellus
ENSCPOG00000006244
I
0.947
PAX4
Erinaceus europaeus
ENSEEUG00000009616
I
0.942
ENSCSAG00000010195
Chlorocebus sabaeus
ENSCSAG00000010195
I
0.927
Pax4
Mus musculus
ENSMUSG00000029706
D
0.924
PAX4
Canis familiaris
ENSCAFG00000001719
I
0.923
ENSP00000368014
Macaca fascicularis
ENSP00000368014
I
0.923
PAX4
Macaca mulatta
ENSMMUG00000015429
I
0.923
PAX4
Otolemur garnettii
ENSOGAG00000013348
I
0.918
ENSOARG00000001951
Ovis aries
ENSOARG00000001951
I
0.918
ENSPPYG00000017971
Pongo abelii
ENSPPYG00000017971
I
0.918
PAX4
Microcebus murinus
ENSMICG00000000095
I
0.918
ENSAMEG00000004648
Ailuropoda melanoleuca
ENSAMEG00000004648
I
0.918
ENSDNOG00000030639
Dasypus novemcinctus
ENSDNOG00000030639
I
0.912
PAX4
Procavia capensis
ENSPCAG00000016257
I
0.912
PAX4
Equus caballus
ENSECAG00000008343
I
0.912
PAX4
Pteropus vampyrus
ENSPVAG00000013944
I
0.907
PAX4
Bos taurus
ENSBTAG00000000410
I
0.907
ENSMPUG00000006575
Mustela putorius furo
ENSMPUG00000006575
I
0.901
ENSSTOG00000002127
Ictidomys tridecemlineatus
ENSSTOG00000002127
I
0.896
PAX4
Tursiops truncatus
ENSTTRG00000006056
I
0.886
PAX4
Myotis lucifugus
ENSMLUG00000030302
I
0.883
Pax4
Rattus norvegicus
ENSRNOG00000008020
I
0.879
Pax4
Dipodomys ordii
ENSDORG00000000332
I
0.863
PAX4
Sorex araneus
ENSSARG00000004842
I
0.862
ENSSHAG00000015143
Sarcophilus harrisii
ENSSHAG00000015143
I
0.848
PAX4
Choloepus hoffmanni
ENSCHOG00000009265
I
0.819
PAX4
Ornithorhynchus anatinus
ENSOANG00000000819
I
0.750